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788 commits 13 branches 4 tags 29 MiB
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203 commits

Author SHA1 Message Date
Guilhem Lavaux
5ad0bed91c If preReShift is specified, also moves back particles to Z=0 in the case of no light cone transformation 2013-03-07 09:34:31 -06:00
Guilhem Lavaux
39d10fdd6b Enforce particles to be in the boxsize for the SDF loader 2013-03-07 09:33:21 -06:00
Guilhem Lavaux
b8fa109008 Fixed position scaling in SDF 2013-03-06 00:59:28 +01:00
Guilhem Lavaux
1c1c8b778e Fixes to SDF loader 2013-03-05 14:56:44 +01:00
Guilhem Lavaux
132d96adf5 SDF: Do not bulk copy the header but instead copy its components 2013-03-05 08:42:34 -05:00
P.M. Sutter
eca4ef4362 added to output line to signal which subsampling has been done; output number of particles on resubsample 2013-03-04 08:56:07 -06:00
P.M. Sutter
69aa5b2676 removed assertion that particle IDs are less than number of particles 2013-03-03 23:30:15 -06:00
P.M. Sutter
db6e80a343 Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification 2013-03-03 21:00:47 -06:00
P.M. Sutter
29cb7a5a45 committing misc local edits before mergering with GPL'd versions 2013-03-03 21:00:37 -06:00
Guilhem Lavaux
5d9dad1439 Updated Copyright/License 2013-03-02 20:23:33 -05:00
Guilhem Lavaux
bce9ac1dd3 Removed the possibility of a later version. The patent mess is unclear. 2013-03-02 18:33:33 -05:00
Guilhem Lavaux
aa38661b65 Added copyright/license notice 2013-03-02 18:30:40 -05:00
Guilhem Lavaux
e9194f5c55 Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification 2013-03-02 10:45:10 -06:00
Guilhem Lavaux
69def32595 Added more assertion checks. Fixed default value for the subsampling. 2013-03-02 10:44:15 -06:00
Guilhem Lavaux
3c9ad41132 Activated call to SDF loader in generateMock 2013-03-02 09:57:11 -06:00
P.M. Sutter
df98c86a03 modified scripts to work with new generateMock 2013-03-02 09:40:06 -06:00
Guilhem Lavaux
a611d77c5d Fix in multidark loader: attributes must not be touched once created. 2013-03-01 08:50:41 -06:00
Guilhem Lavaux
99f1b3888e Fixed spurious braces and a SEGV in multidark loading procedure 2013-02-28 18:24:23 -06:00
Guilhem Lavaux
14b52c4248 Finished subsubsampling on regeneration 2013-02-28 17:09:27 -06:00
Guilhem Lavaux
8625ab633c Added support for subsubsampling 2013-02-28 17:02:30 -05:00
Guilhem Lavaux
91901c0186 Use proper interface to reset the preselector 2013-02-27 14:08:49 -05:00
Guilhem Lavaux
393b6e756e Fixed duplicated name error in generateFromCatalog. Fixed numPart setup from the exact number of accepted particles 2013-02-27 12:59:28 -06:00
Guilhem Lavaux
5b8a97d170 Merged 2013-02-27 12:41:37 -06:00
Guilhem Lavaux
7e121e5b5d Reset the number generator before rerunning the preprocessor 2013-02-27 12:40:11 -06:00
Guilhem Lavaux
3f7b54a3d2 Added (optional for the moment) SDF support in simulation_loaders. 2013-02-27 13:35:59 -05:00
Guilhem Lavaux
c6dd08bd7d Merge branch 'master' of https://bitbucket.org/cosmicvoids/void_identification 2013-02-26 17:46:11 -05:00
Guilhem Lavaux
d291651ff1 Factored out the basic preprocessing code (partially inline subsampling) 2013-02-26 17:04:13 -05:00
P.M. Sutter
b0591c0811 added number of particles column to centers_ output in pruneVoids 2013-02-25 13:12:26 -06:00
P.M. Sutter
fa7264e4ee cleaned up logic and output handling in prunevoids; added combined SDSS analysis script; added data preparation scripts 2013-02-25 12:30:24 -06:00
Guilhem Lavaux
5cf7a94538 Moved subsampling to the loaders to be able to do online subsampling (only implemented for gadget and multidark so far, the other coming in...) 2013-02-25 12:29:09 -05:00
P.M. Sutter
7f020f15e5 large files now appear to be supported 2013-02-19 13:30:01 -06:00
Guilhem Lavaux
acd9329b06 Splitted 64 bits into two 32 bits as NetCDF does not support 64 bits integers for storage. (Warning not tested) 2013-02-19 14:19:07 -05:00
Guilhem Lavaux
6ca873989d Use long instead of int for multidark loader 2013-02-19 13:25:41 -05:00
P.M. Sutter
152e062fc4 added prunevoids parameter file 2013-02-14 08:38:24 -06:00
P.M. Sutter
168ef7a0d7 merged guilhem's and my updates 2013-02-09 14:12:40 -06:00
P.M. Sutter
950c6e810a start of shape measurement in void outputs; some improvements and bug fixes to AP analysis 2013-02-09 14:08:44 -06:00
Guilhem Lavaux
5fb3adfc89 Fixed potential memory corruption while loading particle information. Slightly reworked the source code 2013-01-29 13:59:25 -06:00
Guilhem Lavaux
9bd0cbbb88 Fixed regeneration step in generateMock. Fixed gadget loading (missing initialization for multiple files) 2013-01-29 13:58:12 -06:00
Guilhem Lavaux
64e226c786 Be compatible with older version of the parameter file (without is_observation) 2013-01-21 21:38:38 -05:00
Guilhem Lavaux
361ab5b617 Merge branch 'master' of ssh://bitbucket.org/cosmicvoids/void_identification 2013-01-19 12:17:02 -05:00
Guilhem Lavaux
b410694f6a Added an assertion check to trouble shoot potential SEGV 2013-01-19 12:14:08 -05:00
P.M. Sutter
3cb739a6d2 Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification 2013-01-18 09:56:57 -06:00
P.M. Sutter
ae9701e99c replaced void shape fitter with rudimentary moment of inertia calculation 2013-01-18 09:56:31 -06:00
nhamaus
4338a08f44 fixed particle selection problem in generateMock 2013-01-17 15:10:25 +01:00
P.M. Sutter
481da6edd0 fixed bug in barycenter calculation 2013-01-16 14:06:36 -06:00
P.M. Sutter
82c021d478 Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification 2013-01-16 14:05:19 -06:00
Guilhem Lavaux
537b7c1f43 Huge memory leak: simulations were not destroyed while loading 2013-01-08 03:57:05 -05:00
P.M. Sutter
a7cdb80704 added observation flag in info file; stack voids now shifts particles based on redshift of subsample 2012-12-23 16:38:54 -06:00
P.M. Sutter
3c8d7b2fb2 significant speedups to void matching algorithm 2012-12-20 13:38:14 -06:00
P.M. Sutter
e9b2697bc7 fixed printout of subsampling 2012-12-19 08:11:43 -06:00