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  • 3d6a35f3ed fix: disable FLOAT16 as it causes problem on MacOS guilhem/update_dependencies guilhem.lavaux@iap.fr 2025-07-03 15:43:10 +02:00
  • 8111732b0f fix: use unix eol format guilhem.lavaux@iap.fr 2025-07-03 15:42:50 +02:00
  • 328cd77336 fix: fix bad C instructions for modern compiler Guilhem Lavaux 2025-07-02 14:01:53 +02:00
  • b68bc67451 fix: upgrade dependencies path and configuration Guilhem Lavaux 2025-07-02 13:53:48 +02:00
  • 54d71a9a0d fix: update dependencies to have them pass on modern compiler Guilhem Lavaux 2025-07-02 13:46:15 +02:00
  • 53483fd0d8 begin branch to replace qhull with voro++ for tessellation voro Paul M. Sutter 2025-06-28 12:19:33 -04:00
  • dfc6f18413 Merged in fixZobov (pull request #10) master Paul M. Sutter 2025-05-24 13:34:41 +00:00
  • be797c05dc cleanup from last round vide_2.0_devel Paul M. Sutter 2025-05-24 08:56:59 -04:00
  • f4d8893849 Merge branch 'master' of bitbucket.org:cosmicvoids/vide_public Paul M. Sutter 2025-05-22 18:43:45 -04:00
  • 1196294b5d fixed zobov bug which mis-aligned tracers and guard particles when only using one subdivision (it actually affected all cases but only caused issues here) Paul M. Sutter 2025-05-22 18:41:15 -04:00
  • 05030b24e8 made adjustments to support potential new boundary handling scheme; not sure if I'll go through with it so I may roll these changes back Paul M. Sutter 2025-05-22 18:36:01 -04:00
  • 23d665f7bd FIXED zobov bug when only using one subdomain; added zobov buffer as tunable parameter Paul M. Sutter 2025-05-22 09:57:08 -04:00
  • 8730193e71 size of subdivison buffer now a parameter Paul M. Sutter 2025-05-22 09:13:19 -04:00
  • 8e6c9d3bed bug fixes for consolidation of catalog output Paul M. Sutter 2025-05-20 18:06:05 -04:00
  • d6a939d2cf checkpoint for cleaning up output files and consolidating Paul M. Sutter 2025-05-20 16:46:38 -04:00
  • acdb19e6df removed unecessary figure directory Paul M. Sutter 2025-04-24 13:58:26 -04:00
  • f8f960d7dd changed some things around for getting volume normalization to support reading old catalog files Paul M. Sutter 2025-04-23 15:57:04 -04:00
  • 40d7793e54 central density calculation now uses correct normalization from survey volume Paul M. Sutter 2025-04-23 15:25:26 -04:00
  • 5bff8c0da3 central density calculation now uses correct normalization from survey volume Paul M. Sutter 2025-04-23 15:22:07 -04:00
  • 96a3ee422f added more flexible catalog loading options. can now automatically differentiate between old and new catalogs. first step in eliminating cumbersome void outputs Paul M. Sutter 2025-04-23 12:16:47 -04:00
  • c924577a0d removed extranneous tree-building routines Paul M. Sutter 2025-04-23 10:32:35 -04:00
  • 49fcdedc92 removed extranneous loadZobov and tree-building routines Paul M. Sutter 2025-04-23 10:31:56 -04:00
  • b03343f403 removed unused launcher helper routines Paul M. Sutter 2025-04-23 10:19:57 -04:00
  • 83d0d66d90 fixed accidental deletion of redshift calculation Paul M. Sutter 2025-04-22 23:00:52 -04:00
  • ccc2d67cf1 renamed start and end stage parameters; removed unused 'regenerate' flag Paul M. Sutter 2025-04-22 22:43:59 -04:00
  • 4c48221699 continued removal of extranneous parameters Paul M. Sutter 2025-04-22 21:38:13 -04:00
  • 4e87854490 eliminated extranneous/deprecated parameters: zRange (for filtering voids on redshift range during pruning) and fakeDensity (for inserting boundary particles) Paul M. Sutter 2025-04-22 21:27:19 -04:00
  • 1b4751958f cleaned up survey volume calculations. now uses correct z range, which corrects mean tracer separation estimation Paul M. Sutter 2025-04-22 20:02:30 -04:00
  • cee027a759 fixed and calrified zobov vs survey normalization schemes Paul M. Sutter 2025-04-22 13:33:52 -04:00
  • a670b86295 changed from parent ID to parent index for faster searching; NOTE that output in void catalog changed to reflect this Paul M. Sutter 2025-04-21 23:14:57 -04:00
  • b9042c5ce7 new method for building void tree that avoids re-loading catalog Paul M. Sutter 2025-04-21 17:30:58 -04:00
  • d9efa15474 removed mock particle tracking, since that is no longer used Paul M. Sutter 2025-04-21 16:23:25 -04:00
  • fc2d7157f4 bug fixes for previous commit Paul M. Sutter 2025-04-21 15:04:23 -04:00
  • dadfd8d40a extra info in void catalog output (void type, max radius, nearest flagged galaxy), added filtering routines on these properties for post-analysis Paul M. Sutter 2025-04-21 15:02:05 -04:00
  • f9fc9e8990 cleaned up procedure for checking for 'obviously bad' voids; no longer filters on density contrast since this only affects edge voids anyway Paul M. Sutter 2025-03-25 14:49:41 -04:00
  • 93d847b158 removed output of partially-trimmed catalogs Paul M. Sutter 2025-03-24 21:00:46 -04:00
  • 069c148303 temporarily putting mock particles for debugging purposes Paul M. Sutter 2025-03-23 17:58:52 -04:00
  • 4c6ec4ba82 added voidID property to particles in catalog output Paul M. Sutter 2025-03-22 19:28:14 -04:00
  • 4ee334beca Update URL for boost archive ghaemi/fix_band_0_dec ghaemi/fix_0_dec Julien Zoubian 2025-03-13 10:15:03 +00:00
  • 7c2f4c7950 Change the maximum string size for input/output directories. ghaemi/charachter/length Katayoon Ghaemiardakani 2025-03-13 10:14:15 +00:00
  • 74d8907c1c I changed the number of the characters accepted for input and output directories. Katayoon Ghaemiardakani 2025-03-12 10:03:54 +00:00
  • 3868e6a061 Bug: boost archive url not available anymore Julien Zoubian 2025-03-11 19:52:34 +01:00
  • d050988462 fix: various archive updates guilhem/jenkins_1.0 Guilhem Lavaux 2025-03-09 22:22:01 +01:00
  • fdc2485c44 fix: upgrade HDF5 and patch SDF for modern compiler Guilhem Lavaux 2025-03-09 08:16:10 +01:00
  • fc813998bd fix: update boost Guilhem Lavaux 2025-03-08 19:27:41 +01:00
  • 841efc15c2 fix: update boost Guilhem Lavaux 2025-03-08 18:59:10 +01:00
  • 907c59652a fix: add setuptools Guilhem Lavaux 2025-03-08 18:40:32 +01:00
  • 5d7659c320 fix: path for vide predownload Guilhem Lavaux 2025-03-08 18:30:49 +01:00
  • 1f03b55899 fix: Update agent specification Guilhem Lavaux 2025-03-08 18:29:05 +01:00
  • 970d440458 fix copyright notice guilhem/fix/readme Guilhem Lavaux 2025-03-07 10:19:56 +01:00
  • 326756b2bc + radial profiles now full actual density from survey volume, not zobov normalization Paul M. Sutter 2025-03-04 14:07:36 -05:00
  • b79046ac22 changed voronoi plotting to take void index rather than ID Paul M. Sutter 2025-01-18 21:13:51 +10:00
  • ad2d3722cc Added double-checking of flagged galaxies to ensure survey boundaries are respected. Python components of launchers now add their status to log files. Rearranged some warnings for broken tessellations due to guard point encounters, since it's not always a bad thing. Paul M. Sutter 2025-01-17 21:53:25 +08:00
  • 5d93a8a737 Tesllation seems stable with new boundary handling procedure. Rooted out strange adjacency record-keeping due to some galaxies connecting to guard particles. Zobov still generates warning about guard particle encounters, but this is fine for observational datasets because we don't trust the tesselation at the edge galaxies anyway. Paul M. Sutter 2025-01-16 18:40:54 +08:00
  • 091cf5d1dc First steps in purging the tracking of mock particles: no longer present in jovoz2 Paul M. Sutter 2025-01-09 18:21:26 +08:00
  • a1d0b675c7 Removed redshift cuts in pruning, since this is now handled automatically with new boundary management scheme Paul M. Sutter 2025-01-09 16:09:49 +08:00
  • cf97cfba5d Continuing development. Boundary handling seems to be stable and working. Now testing void finding. Paul M. Sutter 2025-01-08 15:13:29 +08:00
  • 3dce2593d9 Implemented (yet another) new boundary handling scheme, whereby we scan radially along survey edge while flagging nearest galaxies. The prepObservation routine was significantly cleaned up to accommodate this, but it was ultimately implemented in python (surveyTools.py) for ease of prototyping, with the intent to move it back into C later. Paul M. Sutter 2025-01-07 20:04:29 +08:00
  • 26272aff90 Initiate mkdocs zoubian/first_steps Julien Zoubian 2024-09-04 23:18:22 +02:00
  • 33e0df1c63 add TODO list Julien Zoubian 2024-09-05 10:53:36 +02:00
  • 54fe8df970 Update build for python compat Julien Zoubian 2024-09-04 21:33:21 +02:00
  • 58e65d7d2b Update build instruction Julien Zoubian 2024-09-04 19:17:35 +02:00
  • c60e92f549 Upgrade cython Guilhem Lavaux 2024-06-11 08:50:34 +02:00
  • eeacfd281e fix: Add healpix Guilhem Lavaux 2024-06-09 11:56:03 +02:00
  • e80a4da545 Import cfitsio package Guilhem Lavaux 2024-06-09 10:30:21 +02:00
  • cf116198b3 fix: Add is configure_boost.cmake from release/2.x Guilhem Lavaux 2024-06-09 07:47:52 +02:00
  • 62dd66be79 added vornoi plotting routine Paul M. Sutter 2024-06-08 16:18:33 +01:00
  • 7f3afca2d7 fixed bug in adjacency reading Paul M. Sutter 2024-06-08 14:04:59 +01:00
  • ad752f21e8 catalog loading routine now also includes edge flag and particle adjancy info Paul M. Sutter 2024-06-07 22:02:33 +02:00
  • a2d49189fb fix: Fix url_hash Guilhem Lavaux 2024-06-07 14:56:47 +02:00
  • 74a0d9d45e chore: Add sha1sum Guilhem Lavaux 2024-06-07 14:35:56 +02:00
  • 518534dff5 Update sha1 of boost Guilhem Lavaux 2024-06-07 13:56:43 +02:00
  • 1a678eda5d weighted volumes propagated to catalog loading routine Paul M. Sutter 2024-06-07 12:18:44 +02:00
  • 78678881af weighted volumes now propagate to pruning step Paul M. Sutter 2024-06-07 12:17:17 +02:00
  • 7e5a51d931 redshift boundary tolerance is now user-selectable Paul M. Sutter 2024-06-07 11:58:36 +02:00
  • 75696cc656 Update boost sha1 Guilhem Lavaux 2024-06-07 09:18:02 +02:00
  • 36f7214b9b Add qhull tgz and import modern external_build Guilhem Lavaux 2024-06-07 08:56:21 +02:00
  • 952c138947 Use single node compilation as it scrambles the output Guilhem Lavaux 2024-06-07 08:17:14 +02:00
  • e5802c009d Fix duplicate download dir Guilhem Lavaux 2024-06-07 08:14:22 +02:00
  • baf18ad27a Add Jenkins support and download cache Guilhem Lavaux 2024-06-06 17:14:14 +02:00
  • c0a69c4536 testing done on self-created masks, now reverting example to provided mask Paul M. Sutter 2024-06-06 20:33:09 +02:00
  • a45eca0b6e carried boundary flags all the way through to pruning; cleaned up pruning routines Paul M. Sutter 2024-06-06 20:26:47 +02:00
  • dd181da42a bug fixed related to different boundary handling procedure. no guarantee that it's correct (yet) but it runs Paul M. Sutter 2024-06-06 00:49:53 +02:00
  • 03c8f773b6 rename helper function from angularDiameter to comovingDistance since that's what it actually is Paul M. Sutter 2024-06-05 23:16:21 +02:00
  • f59fee9bf8 - fixed bug where omegaM was always 0.3 regardless of user input - wrote out flagging of boundary and edge galaxies - turned off placing of boundary particles Paul M. Sutter 2024-06-05 17:28:16 +02:00
  • aded7a7c2c setting the stage for on-the-fly mask and edge calculation Paul M. Sutter 2024-06-05 01:06:36 +02:00
  • 99a441013d renamed tolerance parameter to better reflect its function Paul M. Sutter 2024-06-04 15:46:23 +02:00
  • 4f78bb445b allowed high-z threshold for cutting to be user-selectable Paul M. Sutter 2024-06-04 13:28:54 +02:00
  • ddcb971eae placed mergingThreshold parameter in defaults file Paul M. Sutter 2024-06-04 11:19:07 +02:00
  • d48d740b78 fixed some dependency calls with new layout Paul M. Sutter 2024-06-04 08:57:09 +02:00
  • 438407be74 cleaned up vide toolkit calls Paul M. Sutter 2024-05-22 19:38:20 -04:00
  • 288e2263b6 slightly rearranged vide pipeline files to reduce clutter Paul M. Sutter 2024-05-22 19:05:04 -04:00
  • d7c0fbc720 renamed void_pipeline to vide_pipeline Paul M. Sutter 2024-05-22 18:51:20 -04:00
  • 4d9c5ab2c1 renamed src to source Paul M. Sutter 2024-05-22 16:15:14 -04:00
  • 4dcaf3959b renamed python_tools to python_src to maintain consistency Paul M. Sutter 2024-05-22 16:07:24 -04:00
  • 0f4bc75527 renamed libzobov to util as it contains general-purpose routines for handling voids and particles Paul M. Sutter 2024-05-22 16:05:36 -04:00
  • 3203c24ec5 renamed c_tools to c_src and moved zobov to that directory Paul M. Sutter 2024-05-22 15:54:36 -04:00
  • 50ad2d6d73 renamed 'generateMock' routines to 'prep' routines to accurately reflect what they do Paul M. Sutter 2024-05-22 15:46:04 -04:00
  • b1962100a8 re-added some essential routines; updated example sceipts to reflect new layout Paul M. Sutter 2024-05-22 15:13:55 -04:00
  • 541223fd07 re-added some essential routines; updated example sceipts to reflect new layout Paul M. Sutter 2024-05-22 15:13:15 -04:00