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Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification

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P.M. Sutter 2013-03-03 21:00:47 -06:00
commit db6e80a343
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21
c_tools/analysis/voidOverlap.cpp
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@ -1,3 +1,24 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/analysis/voidOverlap.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
// =============================================================================
//
// Program: voidOverlap

21
c_tools/libzobov/contour_pixels.cpp
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@ -1,3 +1,24 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/libzobov/contour_pixels.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#include <vector>
#include <healpix_map.h>
#include <healpix_map_fitsio.h>

21
c_tools/libzobov/contour_pixels.hpp
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@ -1,3 +1,24 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/libzobov/contour_pixels.hpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#ifndef __CONTOUR_PIXELS_HPP
#define __CONTOUR_PIXELS_HPP

21
c_tools/libzobov/gslIntegrate.hpp
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@ -1,3 +1,24 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/libzobov/gslIntegrate.hpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#ifndef __MYGSL_INTEGRATE_HPP
#define __MYGSL_INTEGRATE_HPP

21
c_tools/libzobov/loadZobov.cpp
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@ -1,3 +1,24 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/libzobov/loadZobov.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#include <cassert>
#include <string>
#include <fstream>

21
c_tools/libzobov/loadZobov.hpp
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@ -1,3 +1,24 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/libzobov/loadZobov.hpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#ifndef __LOAD_ZOBOV_HPP
#define __LOAD_ZOBOV_HPP

21
c_tools/libzobov/particleInfo.cpp
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@ -1,3 +1,24 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/libzobov/particleInfo.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#include <cstdlib>
#include <netcdfcpp.h>
#include <CosmoTool/fortran.hpp>

21
c_tools/libzobov/particleInfo.hpp
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@ -1,3 +1,24 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/libzobov/particleInfo.hpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#ifndef _PARTICLE_INFO_HEADER_HPP
#define _PARTICLE_INFO_HEADER_HPP

21
c_tools/libzobov/voidTree.hpp
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@ -1,3 +1,24 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/libzobov/voidTree.hpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#ifndef _VOID_TREE_HPP
#define _VOID_TREE_HPP

21
c_tools/mock/generateFromCatalog.cpp
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@ -1,3 +1,24 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/mock/generateFromCatalog.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#include <healpix_map.h>
#include <healpix_map_fitsio.h>
#include <boost/format.hpp>

21
c_tools/mock/generateMock.cpp
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@ -1,3 +1,24 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/mock/generateMock.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#include <gsl/gsl_rng.h>
#include <boost/function.hpp>
#include <boost/bind.hpp>

21
c_tools/mock/generateTestMock.cpp
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@ -1,3 +1,24 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/mock/generateTestMock.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#include <iostream>
#include <cstdlib>
#include <CosmoTool/fortran.hpp>

21
c_tools/mock/loaders/basic_loader.cpp
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@ -1,3 +1,24 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/mock/loaders/basic_loader.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#include <cassert>
#include <string>
#include <iostream>

21
c_tools/mock/loaders/flash_loader.cpp
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@ -1,3 +1,24 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/mock/loaders/flash_loader.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#include <cassert>
#include <string>
#include <CosmoTool/loadFlash.hpp>

21
c_tools/mock/loaders/gadget_loader.cpp
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@ -1,3 +1,24 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/mock/loaders/gadget_loader.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#include <vector>
#include <cassert>
#include <string>

21
c_tools/mock/loaders/multidark_loader.cpp
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@ -1,3 +1,24 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/mock/loaders/multidark_loader.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#include <cassert>
#include <string>
#include <fstream>

21
c_tools/mock/loaders/ramses_loader.cpp
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@ -1,3 +1,24 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/mock/loaders/ramses_loader.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#include <cassert>
#include <string>
#include <CosmoTool/loadRamses.hpp>

21
c_tools/mock/loaders/sdf_loader.cpp
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@ -1,3 +1,24 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/mock/loaders/sdf_loader.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#include <iostream>
#include <boost/format.hpp>
#include <vector>

21
c_tools/mock/loaders/sdfloader_internal.hpp
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@ -1,3 +1,24 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/mock/loaders/sdfloader_internal.hpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#ifndef __VOID_SDF_LOADER_INTERNAL_HPP
#define __VOID_SDF_LOADER_INTERNAL_HPP

21
c_tools/mock/loaders/simulation_loader.cpp
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@ -1,3 +1,24 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/mock/loaders/simulation_loader.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#include <cmath>
#include <CosmoTool/loadSimu.hpp>
#include "simulation_loader.hpp"

21
c_tools/mock/loaders/simulation_loader.hpp
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@ -1,3 +1,24 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/mock/loaders/simulation_loader.hpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#ifndef _MOCK_SIMULATION_LOADER_HPP
#define _MOCK_SIMULATION_LOADER_HPP

21
c_tools/stacking/pruneVoids.cpp
View file

@ -1,3 +1,24 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/stacking/pruneVoids.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
// Reads in the void catalog and removes any void that could potentially
// be affected by a mock particle. It does this by computing the longest
// particle distance within each void and comparing it to the distance