mirror of
https://bitbucket.org/cosmicvoids/vide_public.git
synced 2025-07-04 15:21:11 +00:00
cleaned up logic and output handling in prunevoids; added combined SDSS analysis script; added data preparation scripts
This commit is contained in:
P.M. Sutter
parent
7f020f15e5
commit
fa7264e4ee
3 changed files with 293 additions and 239 deletions
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@ -18,11 +18,15 @@
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#include <stdio.h>
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#include <netcdfcpp.h>
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#include "pruneVoids_conf.h"
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#include <vector>
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#define LIGHT_SPEED 299792.458
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#define MPC2Z 100./LIGHT_SPEED
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#define Z2MPC LIGHT_SPEED/100.
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#define CENTRAL_VOID 1
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#define EDGE_VOID 2
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typedef struct partStruct {
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float x, y, z, vol;
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} PART;
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@ -44,32 +48,38 @@ typedef struct voidStruct {
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float nearestEdge;
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float center[3], barycenter[3];
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int accepted;
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int voidType;
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gsl_vector *eval;
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gsl_matrix *evec;
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} VOID;
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void outputVoid(int iVoid, VOID outVoid, FILE* fpZobov, FILE* fpCenters,
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FILE* fpCenterNoCut,
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FILE* fpSkyPositions, FILE* fpBarycenters, FILE* fpDistances,
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FILE* fpShapes, bool isObservation, double *boxLen);
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int main(int argc, char **argv) {
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// initialize arguments
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pruneVoids_info args_info;
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pruneVoids_info args;
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pruneVoids_conf_params args_params;
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pruneVoids_conf_init(&args_info);
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pruneVoids_conf_init(&args);
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pruneVoids_conf_params_init(&args_params);
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args_params.check_required = 0;
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if (pruneVoids_conf_ext (argc, argv, &args_info, &args_params))
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if (pruneVoids_conf_ext (argc, argv, &args, &args_params))
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return 1;
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if (!args_info.configFile_given) {
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if (pruneVoids_conf_required (&args_info,
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if (!args.configFile_given) {
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if (pruneVoids_conf_required (&args,
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PRUNEVOIDS_CONF_PACKAGE))
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return 1;
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} else {
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args_params.check_required = 1;
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args_params.initialize = 0;
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if (pruneVoids_conf_config_file (args_info.configFile_arg,
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&args_info,
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if (pruneVoids_conf_config_file (args.configFile_arg,
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&args,
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&args_params))
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return 1;
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}
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@ -77,12 +87,15 @@ int main(int argc, char **argv) {
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int i, p, p2, numPartTot, numZonesTot, dummy, iVoid, iZ;
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int numVoids, mockIndex, numKept;
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double tolerance;
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FILE *fp, *fpBarycenter, *fpDistances, *fpSkyPositions, *fpInfo;
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FILE *fpShapes;
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FILE *fp, *fpZobovCentral, *fpZobovAll, *fpCentersCentral, *fpCentersAll,
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*fpCentersNoCutCentral, *fpCentersNoCutAll, *fpBarycenterCentral,
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*fpBarycenterAll, *fpDistancesCentral, *fpDistancesAll,
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*fpShapesCentral, *fpShapesAll, *fpSkyPositionsCentral,
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*fpSkyPositionsAll;
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PART *part, *voidPart;
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ZONE2PART *zones2Parts;
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VOID2ZONE *void2Zones;
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VOID *voids;
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std::vector<VOID> voids;
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float *temp, junk, voidVol;
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int junkInt, voidID, numPart, numZones, zoneID, partID, maxNumPart;
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int coreParticle, zoneNumPart;
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@ -98,30 +111,30 @@ int main(int argc, char **argv) {
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gsl_eigen_symmv_workspace *eigw = gsl_eigen_symmv_alloc(3);
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numVoids = args_info.numVoids_arg;
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mockIndex = args_info.mockIndex_arg;
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tolerance = args_info.tolerance_arg;
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numVoids = args.numVoids_arg;
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mockIndex = args.mockIndex_arg;
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tolerance = args.tolerance_arg;
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clock1 = clock();
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printf("Pruning parameters: %f %f %f %s\n", args_info.zMin_arg,
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args_info.zMax_arg,
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args_info.rMin_arg,
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args_info.periodic_arg);
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printf("Pruning parameters: %f %f %f %s\n", args.zMin_arg,
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args.zMax_arg,
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args.rMin_arg,
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args.periodic_arg);
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// check for periodic box
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periodicX = 0;
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periodicY = 0;
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periodicZ = 0;
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if (!args_info.isObservation_flag) {
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if ( strchr(args_info.periodic_arg, 'x') != NULL) {
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if (!args.isObservation_flag) {
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if ( strchr(args.periodic_arg, 'x') != NULL) {
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periodicX = 1;
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printf("Will assume x-direction is periodic.\n");
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}
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if ( strchr(args_info.periodic_arg, 'y') != NULL) {
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if ( strchr(args.periodic_arg, 'y') != NULL) {
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periodicY = 1;
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printf("Will assume y-direction is periodic.\n");
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}
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if ( strchr(args_info.periodic_arg, 'z') != NULL) {
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if ( strchr(args.periodic_arg, 'z') != NULL) {
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periodicZ = 1;
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printf("Will assume z-direction is periodic.\n");
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}
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@ -129,7 +142,7 @@ int main(int argc, char **argv) {
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// load box size
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printf("\n Getting info...\n");
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NcFile f_info(args_info.extraInfo_arg);
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NcFile f_info(args.extraInfo_arg);
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ranges[0][0] = f_info.get_att("range_x_min")->as_double(0);
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ranges[0][1] = f_info.get_att("range_x_max")->as_double(0);
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ranges[1][0] = f_info.get_att("range_y_min")->as_double(0);
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@ -143,7 +156,7 @@ int main(int argc, char **argv) {
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// read in all particle positions
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printf("\n Loading particles...\n");
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fp = fopen(args_info.partFile_arg, "r");
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fp = fopen(args.partFile_arg, "r");
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fread(&dummy, 1, 4, fp);
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fread(&numPartTot, 1, 4, fp);
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fread(&dummy, 1, 4, fp);
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@ -154,7 +167,7 @@ int main(int argc, char **argv) {
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volNorm = numPartTot/(boxLen[0]*boxLen[1]*boxLen[2]);
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printf(" VOL NORM = %f\n", volNorm);
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printf(" CENTRAL DEN = %f\n", args_info.maxCentralDen_arg);
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printf(" CENTRAL DEN = %f\n", args.maxCentralDen_arg);
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fread(&dummy, 1, 4, fp);
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fread(temp, numPartTot, 4, fp);
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@ -174,7 +187,7 @@ int main(int argc, char **argv) {
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for (p = 0; p < numPartTot; p++)
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part[p].z = mul*temp[p];
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if (!args_info.isObservation_flag) {
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if (!args.isObservation_flag) {
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for (p = 0; p < numPartTot; p++) {
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part[p].x += ranges[0][0];
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part[p].y += ranges[1][0];
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@ -189,12 +202,12 @@ int main(int argc, char **argv) {
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// read in desired voids
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printf(" Loading voids...\n");
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fp = fopen(args_info.voidDesc_arg ,"r");
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fp = fopen(args.voidDesc_arg ,"r");
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fgets(line, sizeof(line), fp);
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sscanf(line, "%d %s %d %s", &junkInt, junkStr, &junkInt, junkStr);
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fgets(line, sizeof(line), fp);
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voids = (VOID *) malloc(numVoids * sizeof(VOID));
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voids.resize(numVoids);
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i = 0;
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while (fgets(line, sizeof(line), fp) != NULL) {
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sscanf(line, "%d %d %d %f %f %d %d %f %d %f %f\n", &iVoid, &voidID,
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@ -223,7 +236,7 @@ int main(int argc, char **argv) {
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// load up the zone membership for each void
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printf(" Loading void-zone membership info...\n");
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fp = fopen(args_info.void2Zone_arg, "r");
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fp = fopen(args.void2Zone_arg, "r");
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fread(&numZonesTot, 1, 4, fp);
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void2Zones = (VOID2ZONE *) malloc(numZonesTot * sizeof(VOID2ZONE));
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@ -241,7 +254,7 @@ int main(int argc, char **argv) {
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// now the particles-zone
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printf(" Loading particle-zone membership info...\n");
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fp = fopen(args_info.zone2Part_arg, "r");
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fp = fopen(args.zone2Part_arg, "r");
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fread(&dummy, 1, 4, fp);
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fread(&numZonesTot, 1, 4, fp);
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@ -259,7 +272,7 @@ int main(int argc, char **argv) {
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// and finally volumes
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printf(" Loading particle volumes...\n");
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fp = fopen(args_info.partVol_arg, "r");
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fp = fopen(args.partVol_arg, "r");
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fread(&mask_index, 1, 4, fp);
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if (mask_index != mockIndex) {
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printf("NON-MATCHING MOCK INDICES!? %d %d\n", mask_index, mockIndex);
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@ -366,7 +379,7 @@ int main(int argc, char **argv) {
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}
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// compute central density
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centralRad = voids[iVoid].radius/args_info.centralRadFrac_arg;
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centralRad = voids[iVoid].radius/args.centralRadFrac_arg;
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centralDen = 0.;
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int numCentral = 0;
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for (p = 0; p < voids[iVoid].numPart; p++) {
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@ -386,7 +399,7 @@ int main(int argc, char **argv) {
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// compute maximum extent
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/*
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if (args_info.isObservation_flag) {
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if (args.isObservation_flag) {
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maxDist = 0.;
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for (p = 0; p < voids[iVoid].numPart; p++) {
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for (p2 = p; p2 < voids[iVoid].numPart; p2++) {
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@ -419,7 +432,7 @@ int main(int argc, char **argv) {
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voids[iVoid].maxRadius = sqrt(maxDist);
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// }
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if (args_info.isObservation_flag) {
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if (args.isObservation_flag) {
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// compute distance from center to nearest mock
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minDist = 1.e99;
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for (p = mockIndex; p < numPartTot; p++) {
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@ -436,16 +449,16 @@ int main(int argc, char **argv) {
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voids[iVoid].nearestMock = 1.e99;
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}
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if (args_info.isObservation_flag) {
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if (args.isObservation_flag) {
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voids[iVoid].redshiftInMpc =
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sqrt(pow(voids[iVoid].barycenter[0] - boxLen[0]/2.,2) +
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pow(voids[iVoid].barycenter[1] - boxLen[1]/2.,2) +
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pow(voids[iVoid].barycenter[2] - boxLen[2]/2.,2));
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voids[iVoid].redshiftInMpc = voids[iVoid].redshiftInMpc;
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redshift = voids[iVoid].redshiftInMpc;
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nearestEdge = fabs(redshift-args_info.zMax_arg*LIGHT_SPEED/100.);
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//nearestEdge = fmin(fabs(redshift-args_info.zMin_arg*LIGHT_SPEED/100.),
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// fabs(redshift-args_info.zMax_arg*LIGHT_SPEED/100.));
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nearestEdge = fabs(redshift-args.zMax_arg*LIGHT_SPEED/100.);
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//nearestEdge = fmin(fabs(redshift-args.zMin_arg*LIGHT_SPEED/100.),
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// fabs(redshift-args.zMax_arg*LIGHT_SPEED/100.));
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voids[iVoid].redshift = voids[iVoid].redshiftInMpc/LIGHT_SPEED*100.;
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} else {
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@ -504,200 +517,271 @@ int main(int argc, char **argv) {
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int numWrong = 0;
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int numHighDen = 0;
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int numCentral = 0;
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int numEdge = 0;
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int numNearZ = 0;
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int numTooSmall = 0;
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printf(" Picking winners and losers...\n");
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for (iVoid = 0; iVoid < numVoids; iVoid++) {
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printf(" Starting with %d voids\n", voids.size());
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for (iVoid = 0; iVoid < voids.size(); iVoid++) {
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voids[iVoid].accepted = 1;
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}
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for (iVoid = 0; iVoid < numVoids; iVoid++) {
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/*
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int j = 0;
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for (iVoid = 0; iVoid < voids.size(); iVoid++) {
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if (voids[iVoid].densCon < 1.5) {
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// voids[iVoid].accepted = -4;
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}
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}
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*/
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if (voids[iVoid].centralDen > args_info.maxCentralDen_arg) {
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// toss out voids that are obviously wrong
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int iGood = 0;
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for (iVoid = 0; iVoid < voids.size(); iVoid++) {
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if (voids[iVoid].densCon > 1.e4) {
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numWrong++;
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} else {
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voids[iGood++] = voids[iVoid];
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}
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}
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voids.resize(iGood);
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printf(" 1st filter: reiGoodected %d obviously bad\n", numWrong);
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iGood = 0;
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for (iVoid = 0; iVoid < voids.size(); iVoid++) {
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if (voids[iVoid].radius < args.rMin_arg) {
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numTooSmall++;
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} else {
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voids[iGood++] = voids[iVoid];
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}
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}
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voids.resize(iGood);
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printf(" 2nd filter: reiGoodected %d too small\n", numTooSmall);
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iGood = 0;
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for (iVoid = 0; iVoid < voids.size(); iVoid++) {
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// *always* clean out near edges since there are no mocks there
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if (tolerance*voids[iVoid].maxRadius > voids[iVoid].nearestEdge) {
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numNearZ++;
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} else {
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voids[iGood++] = voids[iVoid];
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}
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}
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voids.resize(iGood);
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printf(" 3rd filter: reiGoodected %d too close to high redshift boundaries\n", numNearZ);
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numNearZ = 0;
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iGood = 0;
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for (iVoid = 0; iVoid < voids.size(); iVoid++) {
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// assume the lower z-boundary is "soft" in observations
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if (args.isObservation_flag &&
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voids[iVoid].redshift < args.zMin_arg) {
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numNearZ++;
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} else {
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voids[iGood++] = voids[iVoid];
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}
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}
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voids.resize(iGood);
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printf(" 4th filter: reiGoodected %d too close to low redshift boundaries\n", numNearZ);
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for (iVoid = 0; iVoid < voids.size(); iVoid++) {
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if (voids[iVoid].centralDen > args.maxCentralDen_arg) {
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voids[iVoid].accepted = -1;
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numHighDen++;
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}
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}
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// toss out voids that are obviously wrong
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if (voids[iVoid].densCon > 1.e4) {
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voids[iVoid].accepted = -4;
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numWrong++;
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}
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if (strcmp(args_info.dataPortion_arg, "edge") == 0 &&
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tolerance*voids[iVoid].maxRadius < voids[iVoid].nearestMock) {
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voids[iVoid].accepted = -3;
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for (iVoid = 0; iVoid < voids.size(); iVoid++) {
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if (tolerance*voids[iVoid].maxRadius < voids[iVoid].nearestMock) {
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voids[iVoid].voidType = CENTRAL_VOID;
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numCentral++;
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} else {
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voids[iVoid].voidType = EDGE_VOID;
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numEdge++;
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}
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if (strcmp(args_info.dataPortion_arg, "central") == 0 &&
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tolerance*voids[iVoid].maxRadius > voids[iVoid].nearestMock) {
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voids[iVoid].accepted = -3;
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numEdge++;
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}
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if (voids[iVoid].radius < args_info.rMin_arg) {
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voids[iVoid].accepted = -2;
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numTooSmall++;
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}
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// *always* clean out near edges since there are no mocks there
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if (tolerance*voids[iVoid].maxRadius > voids[iVoid].nearestEdge) {
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voids[iVoid].accepted = -3;
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if (voids[iVoid].accepted == 1) numEdge++;
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}
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// assume the lower z-boundary is "soft" in observations
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if (args_info.isObservation_flag &&
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voids[iVoid].redshift < args_info.zMin_arg) {
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voids[iVoid].accepted = -3;
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if (voids[iVoid].accepted == 1) numEdge++;
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}
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}
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numKept = 0;
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for (iVoid = 0; iVoid < numVoids; iVoid++) {
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if (voids[iVoid].accepted == 1) numKept++;
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}
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printf(" Number kept: %d (out of %d)\n", numKept, numVoids);
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printf(" Rejected %d near the edge\n", numEdge);
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printf(" Rejected %d too small\n", numTooSmall);
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printf(" Rejected %d obviously bad\n", numWrong);
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printf(" Rejected %d too high central density\n", numHighDen);
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printf(" Number kept: %d (out of %d)\n", voids.size(), numVoids);
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printf(" We have %d edge voids\n", numEdge);
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printf(" We have %d central voids\n", numCentral);
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printf(" We have %d too high central density\n", numHighDen);
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printf(" Output...\n");
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fp = fopen(args_info.output_arg, "w");
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fpBarycenter = fopen(args_info.outCenters_arg, "w");
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fpInfo = fopen(args_info.outInfo_arg, "w");
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fpDistances = fopen(args_info.outDistances_arg, "w");
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fpSkyPositions = fopen(args_info.outSkyPositions_arg, "w");
|
||||
fpShapes = fopen(args_info.outShapes_arg, "w");
|
||||
fprintf(fp, "%d particles, %d voids.\n", mockIndex, numKept);
|
||||
fprintf(fp, "see column in master void file\n");
|
||||
fprintf(fpInfo, "# center x,y,z (Mpc/h), volume (normalized), radius (Mpc/h), redshift, volume (Mpc/h^3), void ID, density contrast\n");
|
||||
fprintf(fpSkyPositions, "# RA, dec, redshift, radius (Mpc/h), void ID\n");
|
||||
fprintf(fpShapes, "# void ID, eig(1), eig(2), eig(3), eigv(1)-x, eiv(1)-y, eigv(1)-z, eigv(2)-x, eigv(2)-y, eigv(2)-z, eigv(3)-x, eigv(3)-y, eigv(3)-z\n");
|
||||
for (iVoid = 0; iVoid < numVoids; iVoid++) {
|
||||
fpZobovCentral = fopen((std::string(args.outputDir_arg)+"/voidDesc_central_"+std::string(args.sampleName_arg)+".out").c_str(), "w");
|
||||
fprintf(fpZobovCentral, "%d particles, %d voids.\n", mockIndex, numKept);
|
||||
fprintf(fpZobovCentral, "Void# FileVoid# CoreParticle CoreDens ZoneVol Zone#Part Void#Zones VoidVol Void#Part VoidDensContrast VoidProb\n");
|
||||
|
||||
if (voids[iVoid].accepted != 1) continue;
|
||||
fpZobovAll = fopen((std::string(args.outputDir_arg)+"/voidDesc_all_"+std::string(args.sampleName_arg)+".out").c_str(), "w");
|
||||
fprintf(fpZobovAll, "%d particles, %d voids.\n", mockIndex, numKept);
|
||||
fprintf(fpZobovAll, "Void# FileVoid# CoreParticle CoreDens ZoneVol Zone#Part Void#Zones VoidVol Void#Part VoidDensContrast VoidProb\n");
|
||||
|
||||
fprintf(fp, "%d %d %d %f %f %d %d %f %d %f %f\n",
|
||||
iVoid,
|
||||
voids[iVoid].voidID,
|
||||
voids[iVoid].coreParticle,
|
||||
voids[iVoid].coreDens,
|
||||
voids[iVoid].zoneVol,
|
||||
voids[iVoid].zoneNumPart,
|
||||
voids[iVoid].numZones,
|
||||
voids[iVoid].vol,
|
||||
voids[iVoid].numPart,
|
||||
voids[iVoid].densCon,
|
||||
voids[iVoid].voidProb);
|
||||
fpBarycenterCentral = fopen((std::string(args.outputDir_arg)+"/barycenters_central_"+std::string(args.sampleName_arg)+".out").c_str(), "w");
|
||||
fpBarycenterAll = fopen((std::string(args.outputDir_arg)+"/barycenters_all_"+std::string(args.sampleName_arg)+".out").c_str(), "w");
|
||||
|
||||
fprintf(fpBarycenter, "%d %e %e %e\n",
|
||||
voids[iVoid].voidID,
|
||||
voids[iVoid].barycenter[0],
|
||||
voids[iVoid].barycenter[1],
|
||||
voids[iVoid].barycenter[2]);
|
||||
fpCentersCentral = fopen((std::string(args.outputDir_arg)+"/centers_central_"+std::string(args.sampleName_arg)+".out").c_str(), "w");
|
||||
fprintf(fpCentersCentral, "# center x,y,z (Mpc/h), volume (normalized), radius (Mpc/h), redshift, volume (Mpc/h^3), void ID, density contrast\n");
|
||||
|
||||
fprintf(fpDistances, "%d %e\n",
|
||||
voids[iVoid].voidID,
|
||||
voids[iVoid].nearestMock);
|
||||
fpCentersAll = fopen((std::string(args.outputDir_arg)+"/centers_all_"+std::string(args.sampleName_arg)+".out").c_str(), "w");
|
||||
fprintf(fpCentersAll, "# center x,y,z (Mpc/h), volume (normalized), radius (Mpc/h), redshift, volume (Mpc/h^3), void ID, density contrast\n");
|
||||
|
||||
double outCenter[3];
|
||||
outCenter[0] = voids[iVoid].barycenter[0];
|
||||
outCenter[1] = voids[iVoid].barycenter[1];
|
||||
outCenter[2] = voids[iVoid].barycenter[2];
|
||||
fpCentersNoCutCentral = fopen((std::string(args.outputDir_arg)+"/centers_nocut_central_"+std::string(args.sampleName_arg)+".out").c_str(), "w");
|
||||
fprintf(fpCentersNoCutCentral, "# center x,y,z (Mpc/h), volume (normalized), radius (Mpc/h), redshift, volume (Mpc/h^3), void ID, density contrast\n");
|
||||
|
||||
if (args_info.isObservation_flag) {
|
||||
outCenter[0] = (voids[iVoid].barycenter[0]-boxLen[0]/2.)*100.;
|
||||
outCenter[1] = (voids[iVoid].barycenter[1]-boxLen[1]/2.)*100.;
|
||||
outCenter[2] = (voids[iVoid].barycenter[2]-boxLen[2]/2.)*100.;
|
||||
}
|
||||
|
||||
fprintf(fpInfo, "%.2f %.2f %.2f %.2f %.2f %.5f %.2f %d %f\n",
|
||||
outCenter[0],
|
||||
outCenter[1],
|
||||
outCenter[2],
|
||||
voids[iVoid].vol,
|
||||
voids[iVoid].radius,
|
||||
voids[iVoid].redshift,
|
||||
4./3.*M_PI*pow(voids[iVoid].radius, 3),
|
||||
voids[iVoid].voidID,
|
||||
voids[iVoid].densCon);
|
||||
|
||||
fprintf(fpSkyPositions, "%.2f %.2f %.5f %.2f %d\n",
|
||||
atan((voids[iVoid].barycenter[1]-boxLen[1]/2.) /
|
||||
(voids[iVoid].barycenter[0]-boxLen[0]/2.)) * 180/M_PI + 180,
|
||||
asin((voids[iVoid].barycenter[2]-boxLen[2]/2.) /
|
||||
voids[iVoid].redshiftInMpc) * 180/M_PI,
|
||||
voids[iVoid].redshift,
|
||||
voids[iVoid].radius,
|
||||
voids[iVoid].voidID);
|
||||
|
||||
fprintf(fpShapes, "%d %.2f %.2f %.2f %.2f %.2f %.2f %.2f %.2f %.2f %.2f %.2f %.2f\n",
|
||||
voids[iVoid].voidID,
|
||||
gsl_vector_get(voids[iVoid].eval, 0),
|
||||
gsl_vector_get(voids[iVoid].eval, 1),
|
||||
gsl_vector_get(voids[iVoid].eval, 2),
|
||||
gsl_matrix_get(voids[iVoid].evec, 0 ,0),
|
||||
gsl_matrix_get(voids[iVoid].evec, 0 ,1),
|
||||
gsl_matrix_get(voids[iVoid].evec, 0 ,2),
|
||||
gsl_matrix_get(voids[iVoid].evec, 1 ,0),
|
||||
gsl_matrix_get(voids[iVoid].evec, 1 ,1),
|
||||
gsl_matrix_get(voids[iVoid].evec, 1 ,2),
|
||||
gsl_matrix_get(voids[iVoid].evec, 2 ,0),
|
||||
gsl_matrix_get(voids[iVoid].evec, 2 ,1),
|
||||
gsl_matrix_get(voids[iVoid].evec, 2 ,2)
|
||||
);
|
||||
}
|
||||
fclose(fp);
|
||||
fclose(fpInfo);
|
||||
fclose(fpBarycenter);
|
||||
fclose(fpDistances);
|
||||
|
||||
// print the centers catalog again but without central density cuts
|
||||
fpInfo = fopen(args_info.outNoCutInfo_arg, "w");
|
||||
fprintf(fpInfo, "# center x,y,z (km/s), volume (normalized), radius (Mpc/h), redshift, volume (Mpc/h^3), void ID\n");
|
||||
for (iVoid = 0; iVoid < numVoids; iVoid++) {
|
||||
|
||||
if (voids[iVoid].accepted < -1) continue;
|
||||
|
||||
double outCenter[3];
|
||||
outCenter[0] = voids[iVoid].barycenter[0];
|
||||
outCenter[1] = voids[iVoid].barycenter[1];
|
||||
outCenter[2] = voids[iVoid].barycenter[2];
|
||||
|
||||
if (args_info.isObservation_flag) {
|
||||
outCenter[0] = (voids[iVoid].barycenter[0]-boxLen[0]/2.)*100.;
|
||||
outCenter[1] = (voids[iVoid].barycenter[1]-boxLen[1]/2.)*100.;
|
||||
outCenter[2] = (voids[iVoid].barycenter[2]-boxLen[2]/2.)*100.;
|
||||
}
|
||||
fpCentersNoCutAll = fopen((std::string(args.outputDir_arg)+"/centers_nocut_all_"+std::string(args.sampleName_arg)+".out").c_str(), "w");
|
||||
fprintf(fpCentersNoCutAll, "# center x,y,z (Mpc/h), volume (normalized), radius (Mpc/h), redshift, volume (Mpc/h^3), void ID, density contrast\n");
|
||||
|
||||
|
||||
fprintf(fpInfo, "%.2f %.2f %.2f %.2f %.2f %.5f %.2f %d %f\n",
|
||||
outCenter[0],
|
||||
outCenter[1],
|
||||
outCenter[2],
|
||||
voids[iVoid].vol,
|
||||
voids[iVoid].radius,
|
||||
voids[iVoid].redshift,
|
||||
4./3.*M_PI*pow(voids[iVoid].radius, 3),
|
||||
voids[iVoid].voidID,
|
||||
voids[iVoid].densCon);
|
||||
}
|
||||
fclose(fpInfo);
|
||||
fpDistancesCentral = fopen((std::string(args.outputDir_arg)+"boundaryDistancesCentral_"+std::string(args.sampleName_arg)+".out").c_str(), "w");
|
||||
fpDistancesAll = fopen((std::string(args.outputDir_arg)+"boundaryDistancesAll_"+std::string(args.sampleName_arg)+".out").c_str(), "w");
|
||||
|
||||
fpSkyPositionsCentral = fopen((std::string(args.outputDir_arg)+"/sky_positions_central_"+std::string(args.sampleName_arg)+".out").c_str(), "w");
|
||||
fprintf(fpSkyPositionsCentral, "# RA, dec, redshift, radius (Mpc/h), void ID\n");
|
||||
|
||||
fpSkyPositionsAll = fopen((std::string(args.outputDir_arg)+"/sky_positions_all_"+std::string(args.sampleName_arg)+".out").c_str(), "w");
|
||||
fprintf(fpSkyPositionsAll, "# RA, dec, redshift, radius (Mpc/h), void ID\n");
|
||||
|
||||
fpShapesCentral = fopen((std::string(args.outputDir_arg)+"/shapes_central_"+std::string(args.sampleName_arg)+".out").c_str(), "w");
|
||||
fprintf(fpShapesCentral, "# void ID, eig(1), eig(2), eig(3), eigv(1)-x, eiv(1)-y, eigv(1)-z, eigv(2)-x, eigv(2)-y, eigv(2)-z, eigv(3)-x, eigv(3)-y, eigv(3)-z\n");
|
||||
|
||||
fpShapesAll = fopen((std::string(args.outputDir_arg)+"/shapes_all_"+std::string(args.sampleName_arg)+".out").c_str(), "w");
|
||||
fprintf(fpShapesAll, "# void ID, eig(1), eig(2), eig(3), eigv(1)-x, eiv(1)-y, eigv(1)-z, eigv(2)-x, eigv(2)-y, eigv(2)-z, eigv(3)-x, eigv(3)-y, eigv(3)-z\n");
|
||||
|
||||
|
||||
for (iVoid = 0; iVoid < voids.size(); iVoid++) {
|
||||
|
||||
if (voids[iVoid].voidType == CENTRAL_VOID) {
|
||||
outputVoid(iVoid, voids[iVoid], fpZobovCentral, fpCentersCentral,
|
||||
fpCentersNoCutCentral, fpSkyPositionsCentral,
|
||||
fpBarycenterCentral, fpDistancesCentral, fpShapesCentral,
|
||||
args.isObservation_flag, boxLen);
|
||||
}
|
||||
|
||||
if (voids[iVoid].voidType == EDGE_VOID ||
|
||||
voids[iVoid].voidType == CENTRAL_VOID) {
|
||||
outputVoid(iVoid, voids[iVoid], fpZobovAll, fpCentersAll,
|
||||
fpCentersNoCutAll, fpSkyPositionsAll,
|
||||
fpBarycenterAll, fpDistancesAll, fpShapesAll,
|
||||
args.isObservation_flag, boxLen);
|
||||
}
|
||||
}
|
||||
|
||||
fclose(fpZobovCentral);
|
||||
fclose(fpZobovAll);
|
||||
fclose(fpCentersCentral);
|
||||
fclose(fpCentersAll);
|
||||
fclose(fpCentersNoCutCentral);
|
||||
fclose(fpCentersNoCutAll);
|
||||
fclose(fpBarycenterCentral);
|
||||
fclose(fpBarycenterAll);
|
||||
fclose(fpDistancesCentral);
|
||||
fclose(fpDistancesAll);
|
||||
fclose(fpShapesCentral);
|
||||
fclose(fpShapesAll);
|
||||
fclose(fpSkyPositionsCentral);
|
||||
fclose(fpSkyPositionsAll);
|
||||
|
||||
clock2 = clock();
|
||||
printf(" Time: %f sec (for %d voids)\n", (1.*clock2-clock1)/CLOCKS_PER_SEC, numVoids);
|
||||
printf(" Time: %f sec (for %d voids)\n",
|
||||
(1.*clock2-clock1)/CLOCKS_PER_SEC, numVoids);
|
||||
clock1 = clock();
|
||||
|
||||
|
||||
printf("Done!\n");
|
||||
return 0;
|
||||
} // end main
|
||||
|
||||
|
||||
// ----------------------------------------------------------------------------
|
||||
void outputVoid(int iVoid, VOID outVoid, FILE* fpZobov, FILE* fpCenters,
|
||||
FILE* fpCenterNoCut, FILE* fpSkyPositions,
|
||||
FILE* fpBarycenters, FILE* fpDistances, FILE* fpShapes,
|
||||
bool isObservation, double *boxLen) {
|
||||
|
||||
fprintf(fpZobov, "%d %d %d %f %f %d %d %f %d %f %f\n",
|
||||
iVoid,
|
||||
outVoid.voidID,
|
||||
outVoid.coreParticle,
|
||||
outVoid.coreDens,
|
||||
outVoid.zoneVol,
|
||||
outVoid.zoneNumPart,
|
||||
outVoid.numZones,
|
||||
outVoid.vol,
|
||||
outVoid.numPart,
|
||||
outVoid.densCon,
|
||||
outVoid.voidProb);
|
||||
|
||||
fprintf(fpBarycenters, "%d %e %e %e\n",
|
||||
outVoid.voidID,
|
||||
outVoid.barycenter[0],
|
||||
outVoid.barycenter[1],
|
||||
outVoid.barycenter[2]);
|
||||
|
||||
fprintf(fpDistances, "%d %e\n",
|
||||
outVoid.voidID,
|
||||
outVoid.nearestMock);
|
||||
|
||||
double outCenter[3];
|
||||
outCenter[0] = outVoid.barycenter[0];
|
||||
outCenter[1] = outVoid.barycenter[1];
|
||||
outCenter[2] = outVoid.barycenter[2];
|
||||
|
||||
if (isObservation) {
|
||||
outCenter[0] = (outVoid.barycenter[0]-boxLen[0]/2.)*100.;
|
||||
outCenter[1] = (outVoid.barycenter[1]-boxLen[1]/2.)*100.;
|
||||
outCenter[2] = (outVoid.barycenter[2]-boxLen[2]/2.)*100.;
|
||||
}
|
||||
|
||||
if (outVoid.accepted == 1) {
|
||||
fprintf(fpCenters, "%.2f %.2f %.2f %.2f %.2f %.5f %.2f %d %f\n",
|
||||
outCenter[0],
|
||||
outCenter[1],
|
||||
outCenter[2],
|
||||
outVoid.vol,
|
||||
outVoid.radius,
|
||||
outVoid.redshift,
|
||||
4./3.*M_PI*pow(outVoid.radius, 3),
|
||||
outVoid.voidID,
|
||||
outVoid.densCon);
|
||||
}
|
||||
|
||||
fprintf(fpCenterNoCut, "%.2f %.2f %.2f %.2f %.2f %.5f %.2f %d %f\n",
|
||||
outCenter[0],
|
||||
outCenter[1],
|
||||
outCenter[2],
|
||||
outVoid.vol,
|
||||
outVoid.radius,
|
||||
outVoid.redshift,
|
||||
4./3.*M_PI*pow(outVoid.radius, 3),
|
||||
outVoid.voidID,
|
||||
outVoid.densCon);
|
||||
|
||||
fprintf(fpSkyPositions, "%.2f %.2f %.5f %.2f %d\n",
|
||||
atan((outVoid.barycenter[1]-boxLen[1]/2.) /
|
||||
(outVoid.barycenter[0]-boxLen[0]/2.)) * 180/M_PI + 180,
|
||||
asin((outVoid.barycenter[2]-boxLen[2]/2.) /
|
||||
outVoid.redshiftInMpc) * 180/M_PI,
|
||||
outVoid.redshift,
|
||||
outVoid.radius,
|
||||
outVoid.voidID);
|
||||
|
||||
fprintf(fpShapes, "%d %.2f %.2f %.2f %.2f %.2f %.2f %.2f %.2f %.2f %.2f %.2f %.2f\n",
|
||||
outVoid.voidID,
|
||||
gsl_vector_get(outVoid.eval, 0),
|
||||
gsl_vector_get(outVoid.eval, 1),
|
||||
gsl_vector_get(outVoid.eval, 2),
|
||||
gsl_matrix_get(outVoid.evec, 0 ,0),
|
||||
gsl_matrix_get(outVoid.evec, 0 ,1),
|
||||
gsl_matrix_get(outVoid.evec, 0 ,2),
|
||||
gsl_matrix_get(outVoid.evec, 1 ,0),
|
||||
gsl_matrix_get(outVoid.evec, 1 ,1),
|
||||
gsl_matrix_get(outVoid.evec, 1 ,2),
|
||||
gsl_matrix_get(outVoid.evec, 2 ,0),
|
||||
gsl_matrix_get(outVoid.evec, 2 ,1),
|
||||
gsl_matrix_get(outVoid.evec, 2 ,2)
|
||||
);
|
||||
|
||||
} // end outputVoid
|
||||
|
|
|
|||
|
|
@ -26,21 +26,8 @@ option "zMax" - "Maximum redshift of sample" double optional default="10.0"
|
|||
|
||||
option "rMin" - "Minimum allowable void radius" double optional default="0.0"
|
||||
|
||||
|
||||
option "output" - "Output void file" string required
|
||||
option "outDistances" - "output of distances from centers to nearest mock particle" string required
|
||||
|
||||
option "outCenters" - "output barycenters of voids" string required
|
||||
|
||||
option "outInfo" - "output info of voids" string required
|
||||
|
||||
option "outNoCutInfo" - "output info of voids" string required
|
||||
|
||||
option "outSkyPositions" - "output sky positions of voids" string required
|
||||
|
||||
option "outShapes" - "output shape information of voids" string required
|
||||
|
||||
option "dataPortion" - "all, central, or edge" string required
|
||||
option "outputDir" - "Directory to place outputs" string required
|
||||
option "sampleName" - "unique string to assign to outputs" string required
|
||||
|
||||
option "periodic" - "Set of edges which are periodic" string optional default="xy"
|
||||
|
||||
|
|
|
|||
Loading…
Add table
Add a link
Reference in a new issue