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https://bitbucket.org/cosmicvoids/vide_public.git
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significant speedups to void matching algorithm
This commit is contained in:
P.M. Sutter
parent
e9b2697bc7
commit
3c8d7b2fb2
1 changed files with 55 additions and 67 deletions
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@ -88,6 +88,8 @@ int main(int argc, char **argv) {
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int closestMatchID;
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float closestMatchDist;
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float commonVolRatio;
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MATCHPROPS newMatch;
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int MAX_MATCHES = 20;
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CATALOG catalog1, catalog2;
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@ -134,38 +136,44 @@ int main(int argc, char **argv) {
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printf("Will assume z-direction is periodic.\n");
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}
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printf(" Determining overlap...\n");
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/*
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// just use centers
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// find closest voids
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printf(" Finding nearest matches...\n");
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for (iVoid1 = 0; iVoid1 < catalog1.numVoids; iVoid1++) {
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closestMatchDist = 1.e99;
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for (iVoid2 = 0; iVoid2 < catalog2.numVoids; iVoid2++) {
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rdist = getDist(catalog1, catalog2, iVoid1, iVoid2,
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periodicX, periodicY, periodicZ);
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if (rdist < closestMatchDist) {
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closestMatchID = iVoid2;
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closestMatchDist = rdist;
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newMatch.matchID = iVoid2;
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newMatch.commonVol = 0;
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newMatch.dist = rdist;
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if (catalog1.voids[iVoid1].matches.size() < MAX_MATCHES) {
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catalog1.voids[iVoid1].matches.push_back(newMatch);
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} else {
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// find the farthest match
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float farthestMatchDist = 0;
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int farthestMatchID = 0;
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for (iMatch = 0; iMatch < MAX_MATCHES; iMatch++) {
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if (catalog1.voids[iVoid1].matches[iMatch].dist > farthestMatchDist){
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farthestMatchDist = catalog1.voids[iVoid1].matches[iMatch].dist;
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farthestMatchID = iMatch;
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}
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}
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if (rdist < farthestMatchDist)
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catalog1.voids[iVoid1].matches[farthestMatchID] = newMatch;
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}
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}
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MATCHPROPS newMatch;
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newMatch.matchID = closestMatchID;
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newMatch.commonVol = 1;
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newMatch.dist = closestMatchDist;
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catalog1.voids[iVoid1].matches.push_back(newMatch);
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}
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}
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*/
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printf(" Determining overlap...\n");
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for (iVoid1 = 0; iVoid1 < catalog1.numVoids; iVoid1++) {
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printf(" Working on void %d of %d...\n", iVoid1, catalog1.numVoids);
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printf(" Working on void %d of %d...\n", iVoid1+1, catalog1.numVoids);
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voidID1 = catalog1.voids[iVoid1].voidID;
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for (iVoid2 = 0; iVoid2 < catalog2.numVoids; iVoid2++) {
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for (iMatch = 0; iMatch < catalog1.voids[iVoid1].matches.size();iMatch++) {
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iVoid2 = catalog1.voids[iVoid1].matches[iMatch].matchID;
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voidID2 = catalog2.voids[iVoid2].voidID;
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match = false;
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for (iZ1 = 0; iZ1 < catalog1.void2Zones[voidID1].numZones; iZ1++) {
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zoneID1 = catalog1.void2Zones[voidID1].zoneIDs[iZ1];
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@ -180,6 +188,7 @@ int main(int argc, char **argv) {
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partID2 = catalog2.zones2Parts[zoneID2].partIDs[p2];
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match = false;
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if (args.useID_flag) {
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if (catalog1.part[partID1].uniqueID ==
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catalog2.part[partID2].uniqueID) match = true;
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@ -203,35 +212,12 @@ int main(int argc, char **argv) {
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r2 = pow(3./4./M_PI*catalog2.part[partID2].volume /
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catalog2.numPartTot, 1./3.);
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if (rdist <= 0.1*r1 || rdist <= 0.1*r2) match = true;
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}
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}
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if (match) {
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bool alreadyMatched = false;
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for (iMatch = 0;
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iMatch < catalog1.voids[iVoid1].matches.size(); iMatch++) {
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if (catalog1.voids[iVoid1].matches[iMatch].matchID ==
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iVoid2) {
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alreadyMatched = true;
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break;
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}
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}
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if (alreadyMatched) {
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//catalog1.voids[iVoid1].matches[iMatch].commonVol += 1;
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catalog1.voids[iVoid1].matches[iMatch].commonVol +=
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catalog1.part[partID1].volume;
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} else {
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MATCHPROPS newMatch;
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newMatch.matchID = iVoid2;
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//newMatch.commonVol = 1;
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newMatch.commonVol = catalog1.part[partID1].volume;
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newMatch.dist = getDist(catalog1, catalog2, iVoid1, iVoid2,
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periodicX, periodicY, periodicZ);
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catalog1.voids[iVoid1].matches.push_back(newMatch);
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} // end if match
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}
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catalog1.voids[iVoid1].matches[iMatch].commonVol +=
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catalog2.part[partID2].volume;
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} // end if match
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} // end p2
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} // end iZ2
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@ -240,11 +226,13 @@ int main(int argc, char **argv) {
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} // end iVoid2
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} // end match finding
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printf(" Sorting matches...\n");
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for (iVoid1 = 0; iVoid1 < catalog1.numVoids; iVoid1++) {
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sortMatches(catalog1.voids[iVoid1].matches);
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}
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// count up significant matches
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printf(" Categorizing matches...\n");
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for (iVoid1 = 0; iVoid1 < catalog1.numVoids; iVoid1++) {
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closestMatchDist = 0.;
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for (iMatch = 0; iMatch < catalog1.voids[iVoid1].matches.size(); iMatch++) {
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@ -257,12 +245,12 @@ int main(int argc, char **argv) {
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}
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// output summary
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printf(" Output...\n");
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std::string filename;
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filename = string(args.outfile_arg);
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filename = filename.append("_summary.out");
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filename = filename.append("summary.out");
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fp = fopen(filename.c_str(), "w");
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//fp = fopen(args.outfile_arg, "w");
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fprintf(fp, "# void ID, radius, radius ratio, common volume ratio, relative dist, num matches, num significant matches\n");
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fprintf(fp, "# void ID, radius, radius ratio, common volume ratio, common volume ratio 2, relative dist, num matches, num significant matches\n");
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for (iVoid1 = 0; iVoid1 < catalog1.numVoids; iVoid1++) {
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int voidID = catalog1.voids[iVoid1].voidID;
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if (catalog1.voids[iVoid1].numMatches > 0) {
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@ -272,27 +260,31 @@ int main(int argc, char **argv) {
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commonVolRatio = catalog1.voids[iVoid1].matches[0].commonVol /
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//catalog1.voids[iVoid1].numPart;
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catalog1.voids[iVoid1].vol;
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float volRatio = catalog1.voids[iVoid1].matches[0].commonVol /
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catalog2.voids[iVoid2].vol;
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rdist = catalog1.voids[iVoid1].matches[0].dist;
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rdist /= catalog1.voids[iVoid1].radius;
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fprintf(fp, "%d %.2f %.2f %.2f %.2f %d %d\n", voidID,
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fprintf(fp, "%d %.2f %.2f %.2f %.2f %.2f %d %d\n", voidID,
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catalog1.voids[iVoid1].radiusMpc,
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rRatio,
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commonVolRatio,
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volRatio,
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rdist,
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catalog1.voids[iVoid1].numMatches,
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catalog1.voids[iVoid1].numBigMatches);
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} else {
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fprintf(fp, "%d %f 0.0 0.0 0.0 0 0\n", voidID,
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catalog1.voids[iVoid1].radius);
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fprintf(fp, "%d %.2f 0.0 0.0 0.0 0.0 0 0\n", voidID,
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catalog1.voids[iVoid1].radiusMpc);
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}
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} // end printing
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fclose(fp);
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// output detail
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printf(" Output detail...\n");
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filename = string(args.outfile_arg);
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filename = filename.append("_detail.out");
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filename = filename.append("detail.out");
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fp = fopen(filename.c_str(), "w");
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int MAX_OUT = 10;
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fprintf(fp, "# void ID, match common vol\n");
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@ -300,14 +292,13 @@ int main(int argc, char **argv) {
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int voidID = catalog1.voids[iVoid1].voidID;
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fprintf(fp,"%d: ", voidID);
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for (iMatch = 0; iMatch < MAX_OUT; iMatch++) {
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if (iMatch < catalog1.voids[iVoid].matches.size()) {
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if (iMatch < catalog1.voids[iVoid1].matches.size()) {
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commonVolRatio = catalog1.voids[iVoid1].matches[iMatch].commonVol /
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//catalog1.voids[iVoid1].numPart;
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catalog1.voids[iVoid1].vol;
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fprintf(fp, "%.2f ", commonVolRatio);
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fprintf(fp, "%.3f ", catalog1.voids[iVoid1].matches[iMatch].dist);
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//fprintf(fp, "%.2f ", commonVolRatio);
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} else {
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fprintf(fp, "0.00 ");
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}
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@ -443,10 +434,6 @@ void loadCatalog(const char *partFile, const char *volFile,
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catalog.voids[i].voidProb = voidProb;
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catalog.voids[i].radius = pow(voidVol/catalog.numPartTot*3./4./M_PI, 1./3.);
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//catalog.voids[i].biggestMatchID = -1;
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//catalog.voids[i].biggestMatchVol = 0;
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//catalog.voids[i].closestMatchID = -1;
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//catalog.voids[i].closestMatchDist = 1.e99;
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catalog.voids[i].numMatches = 0;
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catalog.voids[i].numBigMatches = 0;
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@ -548,14 +535,15 @@ void sortMatches(std::vector<MATCHPROPS>& matches) {
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MATCHPROPS tempMatch;
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bool swapped;
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if (matches.size() == 1) return;
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if (matches.size() <= 1) return;
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swapped = false;
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while (!swapped) {
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swapped = true;
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while (swapped) {
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swapped = false;
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for (int iMatch = 0; iMatch < matches.size() - 1; iMatch++) {
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if (matches[iMatch].commonVol > matches[iMatch+1].commonVol) {
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tempMatch = matches[iMatch];
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if (matches[iMatch].dist > matches[iMatch+1].dist) {
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//if (matches[iMatch].commonVol < matches[iMatch+1].commonVol) {
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tempMatch = matches[iMatch+1];
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matches[iMatch+1] = matches[iMatch];
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matches[iMatch] = tempMatch;
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swapped = true;
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