203 commits

Author	SHA1	Message	Date
P.M. Sutter	3dd1281cc9	further improvements to void overlap stuff	2012-12-18 21:41:06 -06:00
P.M. Sutter	ff3c17660a	merging my changes and nico's changes to prunvevoids	2012-12-18 12:15:07 -06:00
P.M. Sutter	87c62f321b	Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification	2012-12-18 12:14:37 -06:00
P.M. Sutter	c578ddf1f9	optional periodic in prunevoid barycenters, updated multidark script	2012-12-18 12:14:25 -06:00
P.M. Sutter	7f3127fe7e	more work on merger tree analysis code	2012-12-18 12:08:33 -06:00
nhamaus	64adea4a9b	Enforced pbc for void-barycenters	2012-12-18 16:28:20 +01:00
P.M. Sutter	c7b9a4f14b	further enhancements to void merger trees	2012-12-15 21:16:03 -06:00
P.M. Sutter	a5f88a8b3c	void overlap analysis appears to work	2012-12-12 10:26:12 -06:00
P.M. Sutter	0b9673b24b	putting fabs in right spot in prunevoids	2012-12-10 21:01:25 -06:00
P.M. Sutter	6a7f507843	switch abs to fabs in pruneVoids	2012-12-10 20:03:51 -06:00
P.M. Sutter	5f1e6a63cf	starting to work in merger tree analysis	2012-12-10 12:17:22 -06:00
P.M. Sutter	b20ed47367	fix to uniqueID for catalog data	2012-12-09 21:51:46 -06:00
P.M. Sutter	6e18299ade	another attempt at making the jobSuccessful call work; some other minor fixes	2012-12-07 08:11:28 -06:00
P.M. Sutter	2c3fe1b35d	fixed support for masked mock data sets; now skips over comments in halo catalogs	2012-12-03 11:00:51 -06:00
P.M. Sutter	b77f4f4e9e	uniqueID now enabled for multidark	2012-11-30 07:53:41 -06:00
Guilhem Lavaux	4c5159823a	Removed cubic, Use cube from CosmoTool	2012-11-30 07:39:11 -05:00
Guilhem Lavaux	5783109225	Merge branch 'master' of https://bitbucket.org/cosmicvoids/void_identification	2012-11-30 07:36:00 -05:00
P.M. Sutter	ba2abd1bd6	fixed merge	2012-11-29 11:22:15 -06:00
P.M. Sutter	022eec19bb	some bug fixes to the a-p analysis scripts; fixed major bug in prunevoids; updated catalog release scripts	2012-11-29 11:14:59 -06:00
Guilhem Lavaux	d29f92529b	Moved simulation loaders into their own subdirectory.	2012-11-25 10:23:31 -05:00
Guilhem Lavaux	9f554e10ed	Use NetCDF4 file format for support for large variables	2012-11-24 17:27:12 -05:00
Guilhem Lavaux	602dc86be5	Re-added Flash. Splitted loaders into their own static library	2012-11-24 09:44:48 -06:00
Guilhem Lavaux	6fbf034768	Re-added ramses loader, multidark loader	2012-11-24 09:40:58 -06:00
Guilhem Lavaux	1a190a6be0	Added back Ramses loader	2012-11-23 14:42:57 -06:00
Guilhem Lavaux	745b073ed6	GenerateMock working with Gadget snapshots	2012-11-23 14:31:46 -06:00
Guilhem Lavaux	748f2c7107	Fixed scaling of boxsize to account for different units	2012-11-23 14:04:44 -05:00
Guilhem Lavaux	5573b82c44	Initialize variables in SimulationLoader	2012-11-23 14:01:09 -05:00
Guilhem Lavaux	91926434a4	Be more verbose	2012-11-23 13:57:00 -05:00
Guilhem Lavaux	cc28abc14d	Fixed detection of number of files in Gadget loader	2012-11-23 13:54:42 -05:00
Guilhem Lavaux	529024c5ab	Added missing loaders	2012-11-23 13:50:52 -05:00
Guilhem Lavaux	b3ee63de56	Moving toward true multi-file handling	2012-11-23 13:49:44 -05:00
Guilhem Lavaux	a4cb64e6c4	Fixed memory bugs in generateMock	2012-11-22 12:16:35 -06:00
Guilhem Lavaux	26f6864f47	Large rework of generateMock for handling partial load of snapshots and thus larger simulations. Work not yet complete.	2012-11-22 10:51:50 -05:00
Guilhem Lavaux	2696ad20d1	Fixed SEGV in case the underlying simulation data does not support uniqueID	2012-11-20 19:21:21 -06:00
Guilhem Lavaux	72cd279b25	Use attribute infrastructure to pass uniqueID tag.	2012-11-20 17:16:45 -05:00
Guilhem Lavaux	a91851de76	Merge	2012-11-20 17:06:20 -05:00
Guilhem Lavaux	7d90960783	Added support for unordered particle id	2012-11-20 10:05:24 -05:00
Guilhem Lavaux	03782c8843	Emit the particle id and not its rank. At the moment the two are equivalent but will change.	2012-11-20 09:56:24 -05:00
P.M. Sutter	06c8ddc26e	more consistent handling of redshift bounaries in pruneVoids	2012-11-19 07:51:01 -06:00
P.M. Sutter	80c2b7f603	more bug fixes for the minimum halo mass cuts...sigh	2012-11-18 22:47:49 -06:00
P.M. Sutter	9d97522472	more bug fixes	2012-11-18 18:09:18 -06:00
P.M. Sutter	0b54a31d0c	many bug fixes from the previous update; new changes appear to work now	2012-11-18 14:23:50 -06:00
P.M. Sutter	90964d2be3	fixed bugs associated with saving RA and Dec	2012-11-17 13:01:39 -06:00
Paul Matt Sutter	a53e3bf290	reconfigured to put RA, Dec, redshift, and unique (catalog) ID in the binary ZOBOV file	2012-11-17 02:49:02 -05:00
P.M. Sutter	0ef211a1cc	some small bug fixes, also prepared prunveVoids to potentially remove voids based on density contrast criteria	2012-11-16 09:48:02 -06:00
P.M. Sutter	292afacaf5	now includes automatic detection and handling of periodic boxes; all logic for dealing with this moved to pruneVoids	2012-11-14 06:31:53 -06:00
P.M. Sutter	08ea4ef0a2	more informative sample_info file	2012-11-13 13:56:44 -06:00
Guilhem Lavaux	dff81063d4	Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification	2012-11-08 10:00:16 -05:00
Guilhem Lavaux	9b8ce57a97	Imported code for flexible gadget units. Imported load ramses code. Always invoke metricTransform. Add the option to import box parameters from an already existing mock catalog	2012-11-08 10:00:08 -05:00
P.M. Sutter	053c46e57b	fix to allow switching on/off cosmological distortions	2012-11-07 11:51:51 -06:00