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119 commits

Author SHA1 Message Date
P.M. Sutter
2e832dd415 void overlap now gets barycenters from center_ file rather than barycenter_ file 2013-03-31 22:04:27 -05:00
P.M. Sutter
4cd7408a8a now switched to accepting only top-level voids; harmonized ancillary files (barycenters_, voidDesc_) to the output of centers_ 2013-03-31 22:03:22 -05:00
P.M. Sutter
151c605335 pruneVoids now cleans out non-leaf voids; adjusted stackVoidsZero launcher to accept custom stacks 2013-03-30 15:24:45 -05:00
P.M. Sutter
2bc3b3ef27 pruneVoids now (rather clumsily) loads tree information; rejects voids that are not leaf nodes 2013-03-28 20:37:28 -05:00
P.M. Sutter
8043742123 added script to compare stacks and radial profiles of matched voids 2013-03-23 11:50:17 -05:00
P.M. Sutter
cb2b0de143 reset to original multidark loading 2013-03-21 21:54:02 -05:00
P.M. Sutter
7c172d5642 Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification 2013-03-20 07:19:34 -05:00
P.M. Sutter
c6a9a1c875 reconfigure multidark loader to work with sdf rescaling and shifts 2013-03-20 07:18:15 -05:00
Guilhem Lavaux
5cbf68e072 Added a check that the subsampling value is the adequate one. 2013-03-20 04:55:59 -04:00
Guilhem Lavaux
189fa22c6b Generate a graceful error message instead of a Segmentation Fault 2013-03-19 16:36:26 -04:00
Guilhem Lavaux
a0d5b17164 Have an output that is more informative. 2013-03-19 10:45:33 -04:00
Guilhem Lavaux
17546f2a1e Reenforce periodic boundaries (to deal with round-off error in float) 2013-03-19 10:00:25 -04:00
P.M. Sutter
b7ce099e9e Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification 2013-03-08 13:04:22 -06:00
Guilhem Lavaux
004e4e3097 Fixed Hubble constant computations to be returned in the correct variable. 2013-03-08 12:40:06 -06:00
P.M. Sutter
5746e76d46 Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification 2013-03-07 10:44:11 -06:00
P.M. Sutter
938df0cbb1 added a temporary debug printout to check the parent/child status of accepted voids 2013-03-07 10:43:52 -06:00
Guilhem Lavaux
5ad0bed91c If preReShift is specified, also moves back particles to Z=0 in the case of no light cone transformation 2013-03-07 09:34:31 -06:00
Guilhem Lavaux
39d10fdd6b Enforce particles to be in the boxsize for the SDF loader 2013-03-07 09:33:21 -06:00
Guilhem Lavaux
b8fa109008 Fixed position scaling in SDF 2013-03-06 00:59:28 +01:00
Guilhem Lavaux
1c1c8b778e Fixes to SDF loader 2013-03-05 14:56:44 +01:00
Guilhem Lavaux
132d96adf5 SDF: Do not bulk copy the header but instead copy its components 2013-03-05 08:42:34 -05:00
P.M. Sutter
eca4ef4362 added to output line to signal which subsampling has been done; output number of particles on resubsample 2013-03-04 08:56:07 -06:00
P.M. Sutter
69aa5b2676 removed assertion that particle IDs are less than number of particles 2013-03-03 23:30:15 -06:00
P.M. Sutter
db6e80a343 Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification 2013-03-03 21:00:47 -06:00
P.M. Sutter
29cb7a5a45 committing misc local edits before mergering with GPL'd versions 2013-03-03 21:00:37 -06:00
Guilhem Lavaux
5d9dad1439 Updated Copyright/License 2013-03-02 20:23:33 -05:00
Guilhem Lavaux
bce9ac1dd3 Removed the possibility of a later version. The patent mess is unclear. 2013-03-02 18:33:33 -05:00
Guilhem Lavaux
aa38661b65 Added copyright/license notice 2013-03-02 18:30:40 -05:00
Guilhem Lavaux
e9194f5c55 Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification 2013-03-02 10:45:10 -06:00
Guilhem Lavaux
69def32595 Added more assertion checks. Fixed default value for the subsampling. 2013-03-02 10:44:15 -06:00
Guilhem Lavaux
3c9ad41132 Activated call to SDF loader in generateMock 2013-03-02 09:57:11 -06:00
P.M. Sutter
df98c86a03 modified scripts to work with new generateMock 2013-03-02 09:40:06 -06:00
Guilhem Lavaux
a611d77c5d Fix in multidark loader: attributes must not be touched once created. 2013-03-01 08:50:41 -06:00
Guilhem Lavaux
99f1b3888e Fixed spurious braces and a SEGV in multidark loading procedure 2013-02-28 18:24:23 -06:00
Guilhem Lavaux
14b52c4248 Finished subsubsampling on regeneration 2013-02-28 17:09:27 -06:00
Guilhem Lavaux
8625ab633c Added support for subsubsampling 2013-02-28 17:02:30 -05:00
Guilhem Lavaux
91901c0186 Use proper interface to reset the preselector 2013-02-27 14:08:49 -05:00
Guilhem Lavaux
393b6e756e Fixed duplicated name error in generateFromCatalog. Fixed numPart setup from the exact number of accepted particles 2013-02-27 12:59:28 -06:00
Guilhem Lavaux
5b8a97d170 Merged 2013-02-27 12:41:37 -06:00
Guilhem Lavaux
7e121e5b5d Reset the number generator before rerunning the preprocessor 2013-02-27 12:40:11 -06:00
Guilhem Lavaux
3f7b54a3d2 Added (optional for the moment) SDF support in simulation_loaders. 2013-02-27 13:35:59 -05:00
Guilhem Lavaux
c6dd08bd7d Merge branch 'master' of https://bitbucket.org/cosmicvoids/void_identification 2013-02-26 17:46:11 -05:00
Guilhem Lavaux
d291651ff1 Factored out the basic preprocessing code (partially inline subsampling) 2013-02-26 17:04:13 -05:00
P.M. Sutter
b0591c0811 added number of particles column to centers_ output in pruneVoids 2013-02-25 13:12:26 -06:00
P.M. Sutter
fa7264e4ee cleaned up logic and output handling in prunevoids; added combined SDSS analysis script; added data preparation scripts 2013-02-25 12:30:24 -06:00
Guilhem Lavaux
5cf7a94538 Moved subsampling to the loaders to be able to do online subsampling (only implemented for gadget and multidark so far, the other coming in...) 2013-02-25 12:29:09 -05:00
P.M. Sutter
7f020f15e5 large files now appear to be supported 2013-02-19 13:30:01 -06:00
Guilhem Lavaux
acd9329b06 Splitted 64 bits into two 32 bits as NetCDF does not support 64 bits integers for storage. (Warning not tested) 2013-02-19 14:19:07 -05:00
Guilhem Lavaux
6ca873989d Use long instead of int for multidark loader 2013-02-19 13:25:41 -05:00
P.M. Sutter
152e062fc4 added prunevoids parameter file 2013-02-14 08:38:24 -06:00