298 commits

Author	SHA1	Message	Date
P.M. Sutter	dee217babf	better handing of HOD	2012-12-09 20:26:54 -06:00
P.M. Sutter	2cdfce6cbf	more flexible handling of masking data sets	2012-12-07 22:57:07 -06:00
P.M. Sutter	6e18299ade	another attempt at making the jobSuccessful call work; some other minor fixes	2012-12-07 08:11:28 -06:00
P.M. Sutter	f155564d6d	fix to halo catalog handling	2012-12-04 21:21:30 -06:00
P.M. Sutter	3cb2a990da	halo catalog file format now handled correctly	2012-12-03 11:09:53 -06:00
P.M. Sutter	2c3fe1b35d	fixed support for masked mock data sets; now skips over comments in halo catalogs	2012-12-03 11:00:51 -06:00
P.M. Sutter	f3f96b0dcd	masking of mock catalogs now works	2012-12-02 13:08:20 -06:00
P.M. Sutter	7484bebbfa	HOD now more general; can support LANL halo catalog files	2012-12-01 16:37:40 -06:00
P.M. Sutter	fec23b5c4f	cleaned up the prepare catalog script to support more general halo files	2012-12-01 08:46:50 -06:00
P.M. Sutter	c781c5ee50	applyMaskToMock now accepts build path	2012-12-01 08:21:33 -06:00
Guilhem Lavaux	082bfde711	Moved the script to its final place. Sigh...	2012-11-30 09:48:12 -05:00
P.M. Sutter	ba2abd1bd6	fixed merge	2012-11-29 11:22:15 -06:00
P.M. Sutter	022eec19bb	some bug fixes to the a-p analysis scripts; fixed major bug in prunevoids; updated catalog release scripts	2012-11-29 11:14:59 -06:00
Guilhem Lavaux	60d77d3ae0	Redirect using &> and not >&	2012-11-21 10:17:57 -05:00
Guilhem Lavaux	a91851de76	Merge	2012-11-20 17:06:20 -05:00
P.M. Sutter	06c8ddc26e	more consistent handling of redshift bounaries in pruneVoids	2012-11-19 07:51:01 -06:00
P.M. Sutter	80c2b7f603	more bug fixes for the minimum halo mass cuts...sigh	2012-11-18 22:47:49 -06:00
Guilhem Lavaux	9e79c784f3	Merge	2012-11-18 21:57:36 -05:00
P.M. Sutter	9d97522472	more bug fixes	2012-11-18 18:09:18 -06:00
P.M. Sutter	0b54a31d0c	many bug fixes from the previous update; new changes appear to work now	2012-11-18 14:23:50 -06:00
P.M. Sutter	90964d2be3	fixed bugs associated with saving RA and Dec	2012-11-17 13:01:39 -06:00
Paul Matt Sutter	10dfe29a26	Supports minimum halo mass cuts. Start of scripts to generate masked mock sets, some files added to later support more general preparation scripts	2012-11-17 13:00:54 -05:00
P.M. Sutter	7c3d7a9d31	merged both mine and nico's fix	2012-11-16 09:59:21 -06:00
P.M. Sutter	0ef211a1cc	some small bug fixes, also prepared prunveVoids to potentially remove voids based on density contrast criteria	2012-11-16 09:48:02 -06:00
nhamaus	3ca6699603	fix so that end of prunevoids is correctly detected	2012-11-16 09:58:33 +01:00
P.M. Sutter	971cf21ea2	potential fix so that end of prunevoids is correctly detected	2012-11-15 10:11:51 -06:00
P.M. Sutter	b6359bb0a9	number of zobov threads and subdivisions now part of dataset definition	2012-11-15 07:31:41 -06:00
P.M. Sutter	6868a026f5	fixed bug where zobov wasn't getting correct nmber of threads; fixed and now hard-coded to 2 parallel threads	2012-11-15 06:47:06 -06:00
P.M. Sutter	443b4bdeec	fixed bug in gadget generation script; prepareGadget now uses separate parameter files; support for random catalogs now enabled	2012-11-15 06:37:59 -06:00
P.M. Sutter	292afacaf5	now includes automatic detection and handling of periodic boxes; all logic for dealing with this moved to pruneVoids	2012-11-14 06:31:53 -06:00
P.M. Sutter	390fb2f4e2	bug fixes to plotting. prepareCatalogs now handles gadget files; prepareGadgetCatalogs now deprecated	2012-11-14 04:37:30 -06:00
P.M. Sutter	afe22f71fa	added start of extra plotting scripts for comparison across data sets	2012-11-13 15:23:37 -06:00
P.M. Sutter	08ea4ef0a2	more informative sample_info file	2012-11-13 13:56:44 -06:00
P.M. Sutter	93ba823764	plotting now supports cumulative number distributions	2012-11-13 13:55:40 -06:00
P.M. Sutter	9cdc037946	some bugs fixed related to gadget unit handling	2012-11-09 08:06:27 -06:00
P.M. Sutter	9c10c3714f	fixed bug for data unit, and fixed bug for detecting completion of pruning	2012-11-09 07:10:08 -06:00
P.M. Sutter	ed3f18f6d0	can now select gadget units in preparation script	2012-11-08 16:06:06 -06:00
nhamaus	95db063b7b	fixed gadget input unit to Mpc/h	2012-11-08 18:03:16 +01:00
P.M. Sutter	053c46e57b	fix to allow switching on/off cosmological distortions	2012-11-07 11:51:51 -06:00
P.M. Sutter	8c6add3311	Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification	2012-11-06 14:41:36 -06:00
P.M. Sutter	61acd59383	futher fixes for handling sub-volumes in analysis	2012-11-06 14:41:09 -06:00
Guilhem Lavaux	c4a157289b	Removed generated cython file	2012-11-05 13:35:51 -05:00
P.M. Sutter	21431f9a31	added a-p analysis script to repo; some minor bug fixes to adjust tools to work with simulation data	2012-11-02 08:19:23 -05:00
Guilhem Lavaux	fb98f89679	Properly build and install the python tools in BINDIR/ext_build/python. Specify more dependencies.	2012-11-01 22:16:13 -04:00
Guilhem Lavaux	d18fbdf10b	Ported python code to netCDF4 package (support most recent netcdf4 on-disk fornat)	2012-10-31 15:00:43 -04:00
Guilhem Lavaux	e380538e66	Cleanup coding style	2012-10-31 14:51:59 -04:00
Guilhem Lavaux	e1f3731682	Removed spurious python cache files	2012-10-31 14:05:05 -04:00
P.M. Sutter	14abbc2018	Slight re-organization of C/C++ tools. Significant modifications to support observational data. Python and pipeline scripts added	2012-10-31 10:43:15 -05:00