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Ported python code to netCDF4 package (support most recent netcdf4 on-disk fornat)

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Guilhem Lavaux 2012-10-31 15:00:43 -04:00
parent e380538e66
commit d18fbdf10b
2 changed files with 18 additions and 14 deletions
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16
python_tools/void_python_tools/backend/backend.py
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@ -13,8 +13,10 @@ import glob
import subprocess
import sys
from pylab import figure
from Scientific.IO.NetCDF import NetCDFFile
import Scientific.N as Num
from netCDF4 import Dataset
NetCDFFile = Dataset
ncFloat='f8' # Double precision
class Stack:
zMin = 0.0
@ -760,7 +762,7 @@ def launchCombine(sample, stack, voidDir=None, logFile=None,
dataTemp = np.append(dataTemp, dataTemp2)
outFile = NetCDFFile(voidDir+"/posx.nc", mode='w')
outFile.createDimension("dim", len(dataTemp))
v = outFile.createVariable("array", Num.Float, ("dim",))
v = outFile.createVariable("array", ncFloat, ("dim",))
v[:] = dataTemp
outFile.close()
@ -773,7 +775,7 @@ def launchCombine(sample, stack, voidDir=None, logFile=None,
dataTemp = np.append(dataTemp, dataTemp2)
outFile = NetCDFFile(voidDir+"/posy.nc", mode='w')
outFile.createDimension("dim", len(dataTemp))
v = outFile.createVariable("array", Num.Float, ("dim",))
v = outFile.createVariable("array", ncFloat, ("dim",))
v[:] = dataTemp
outFile.close()
@ -786,7 +788,7 @@ def launchCombine(sample, stack, voidDir=None, logFile=None,
dataTemp = np.append(dataTemp, dataTemp2)
outFile = NetCDFFile(voidDir+"/posz.nc", mode='w')
outFile.createDimension("dim", len(dataTemp))
v = outFile.createVariable("array", Num.Float, ("dim",))
v = outFile.createVariable("array", ncFloat, ("dim",))
v[:] = dataTemp
outFile.close()
@ -799,7 +801,7 @@ def launchCombine(sample, stack, voidDir=None, logFile=None,
dataTemp = np.append(dataTemp, dataTemp2)
outFile = NetCDFFile(voidDir+"/redshifts.nc", mode='w')
outFile.createDimension("dim", len(dataTemp))
v = outFile.createVariable("array", Num.Float, ("dim",))
v = outFile.createVariable("array", ncFloat, ("dim",))
v[:] = dataTemp
outFile.close()
@ -812,7 +814,7 @@ def launchCombine(sample, stack, voidDir=None, logFile=None,
dataTemp = np.append(dataTemp, dataTemp2)
outFile = NetCDFFile(voidDir+"/indexes.nc", mode='w')
outFile.createDimension("dim", len(dataTemp))
v = outFile.createVariable("array", Num.Float, ("dim",))
v = outFile.createVariable("array", ncFloat, ("dim",))
v[:] = dataTemp
outFile.close()

16
python_tools/void_python_tools/backend/launchers.py
View file

@ -14,11 +14,13 @@ import glob
import subprocess
import sys
from pylab import figure
from Scientific.IO.NetCDF import NetCDFFile
import Scientific.N as Num
from netCDF4 import Dataset
from void_python_tools.backend.classes import *
import void_python_tools.apTools as vp
NetCDFFile = Dataset
ncFloat = 'f8' # Double precision
# -----------------------------------------------------------------------------
def launchGenerate(sample, binPath, workDir=None, inputDataDir=None,
zobovDir=None, figDir=None, logFile=None, useLCDM=False,
@ -626,7 +628,7 @@ def launchCombine(sample, stack, voidDir=None, logFile=None,
dataTemp = np.append(dataTemp, dataTemp2)
outFile = NetCDFFile(voidDir+"/posx.nc", mode='w')
outFile.createDimension("dim", len(dataTemp))
v = outFile.createVariable("array", Num.Float, ("dim",))
v = outFile.createVariable("array", ncFloat, ("dim",))
v[:] = dataTemp
outFile.close()
@ -639,7 +641,7 @@ def launchCombine(sample, stack, voidDir=None, logFile=None,
dataTemp = np.append(dataTemp, dataTemp2)
outFile = NetCDFFile(voidDir+"/posy.nc", mode='w')
outFile.createDimension("dim", len(dataTemp))
v = outFile.createVariable("array", Num.Float, ("dim",))
v = outFile.createVariable("array", ncFloat, ("dim",))
v[:] = dataTemp
outFile.close()
@ -652,7 +654,7 @@ def launchCombine(sample, stack, voidDir=None, logFile=None,
dataTemp = np.append(dataTemp, dataTemp2)
outFile = NetCDFFile(voidDir+"/posz.nc", mode='w')
outFile.createDimension("dim", len(dataTemp))
v = outFile.createVariable("array", Num.Float, ("dim",))
v = outFile.createVariable("array", ncFloat, ("dim",))
v[:] = dataTemp
outFile.close()
@ -665,7 +667,7 @@ def launchCombine(sample, stack, voidDir=None, logFile=None,
dataTemp = np.append(dataTemp, dataTemp2)
outFile = NetCDFFile(voidDir+"/redshifts.nc", mode='w')
outFile.createDimension("dim", len(dataTemp))
v = outFile.createVariable("array", Num.Float, ("dim",))
v = outFile.createVariable("array", ncFloat, ("dim",))
v[:] = dataTemp
outFile.close()
@ -678,7 +680,7 @@ def launchCombine(sample, stack, voidDir=None, logFile=None,
dataTemp = np.append(dataTemp, dataTemp2)
outFile = NetCDFFile(voidDir+"/indexes.nc", mode='w')
outFile.createDimension("dim", len(dataTemp))
v = outFile.createVariable("array", Num.Float, ("dim",))
v = outFile.createVariable("array", ncFloat, ("dim",))
v[:] = dataTemp
outFile.close()