another attempt at making the jobSuccessful call work; some other minor fixes

c_tools/mock/generateMock.cpp

@@ -200,7 +200,7 @@ void generateOutput(SimuData *data, int axis,
   f.beginCheckpoint();
   for (uint32_t i = 0; i < data->NumPart; i++)
     {
-      f.writeReal32(data->Pos[x2][i]);
+      f.writeReal32(data->Pos[x2][i]*LIGHT_SPEED);
     }
   f.endCheckpoint();
 

python_tools/void_python_tools/backend/classes.py

@@ -158,10 +158,11 @@ def jobSuccessful(logFile, doneString):
   jobDone = False
   checkLine = ""
   if os.access(logFile, os.F_OK):
-    filelines = file(logFile, "r").readlines()
-    if len(filelines) >= 1:
-      checkLine = filelines[-1]
-    jobDone = (checkLine == doneString)
+    #filelines = file(logFile, "r").readlines()
+    #if len(filelines) >= 1:
+    #  checkLine = filelines[-1]
+    for line in open(logFile, 'r'):
+      if doneString in line: jobDone = True
   return jobDone
 
 def getStackSuffix(zMin, zMax, rMin, rMax, dataPortion):

python_tools/void_python_tools/backend/launchers.py

@@ -379,8 +379,8 @@ def launchStack(sample, stack, binPath, thisDataPortion=None, logDir=None,
   %s
   ranSeed %d
   dataPortion %s
-  #barycenters %s
-  #boundaryDistances %s
+  barycenters %s
+  boundaryDistances %s
   %s
   """ % \
   (zobovDir+"/voidDesc_"+thisDataPortion+"_"+sampleName+".out",

python_tools/void_python_tools/plotting/plotTools.py

@@ -240,7 +240,7 @@ def plotNumberDistribution(workDir=None, sampleList=None, figDir=None,
       boxVol = vp.getSurveyProps(sample.maskFile, 
                                  sample.zBoundary[0], sample.zBoundary[1],
                                  sample.zRange[0], sample.zRange[1], "all",
-                                 selectionFuncFile=sample.selFunFile)[0]
+                                 selectionFuncFile=None)[0]
     else:
       boxVol = sample.boxLen*sample.boxLen*(sample.zBoundaryMpc[1] - 
                                             sample.zBoundaryMpc[0])