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Author	SHA1	Message	Date
Guilhem Lavaux	2d09cb68df	Imported libSDF into VOID tree	2013-02-27 13:27:23 -05:00
Guilhem Lavaux	c6dd08bd7d	Merge branch 'master' of https://bitbucket.org/cosmicvoids/void_identification	2013-02-26 17:46:11 -05:00
Guilhem Lavaux	d291651ff1	Factored out the basic preprocessing code (partially inline subsampling)	2013-02-26 17:04:13 -05:00
Guilhem Lavaux	c50876d994	Small fix for compile error on gcc 4.7+	2013-02-26 17:02:56 -05:00
P.M. Sutter	260385d9d0	fix to prepareCatalogs to correctly handle non-lightconed outputs	2013-02-25 23:04:24 -06:00
P.M. Sutter	9c0d0230b9	fixed generateCatalog to work with new pruneVoids	2013-02-25 21:25:32 -06:00
P.M. Sutter	343250de42	removed spurius line from launchPrune	2013-02-25 15:32:08 -06:00
P.M. Sutter	a7c352975c	signal end of script in prepareCatalogs	2013-02-25 14:33:14 -06:00
P.M. Sutter	18a48f2e93	much faster and bug-corrected applyMaskToMock	2013-02-25 14:30:08 -06:00
P.M. Sutter	b0591c0811	added number of particles column to centers_ output in pruneVoids	2013-02-25 13:12:26 -06:00
P.M. Sutter	fa7264e4ee	cleaned up logic and output handling in prunevoids; added combined SDSS analysis script; added data preparation scripts	2013-02-25 12:30:24 -06:00
Guilhem Lavaux	5cf7a94538	Moved subsampling to the loaders to be able to do online subsampling (only implemented for gadget and multidark so far, the other coming in...)	2013-02-25 12:29:09 -05:00
Guilhem Lavaux	ecb4479178	Merge branch 'master' of https://bitbucket.org/cosmicvoids/void_identification	2013-02-24 14:15:34 -05:00
Guilhem Lavaux	e0c2862d2c	Added some velocity field stacking support	2013-02-24 14:15:21 -05:00
P.M. Sutter	7f020f15e5	large files now appear to be supported	2013-02-19 13:30:01 -06:00
Guilhem Lavaux	acd9329b06	Splitted 64 bits into two 32 bits as NetCDF does not support 64 bits integers for storage. (Warning not tested)	2013-02-19 14:19:07 -05:00
Guilhem Lavaux	6ca873989d	Use long instead of int for multidark loader	2013-02-19 13:25:41 -05:00
Guilhem Lavaux	97f831fab7	Added missing sharp dependency	2013-02-19 12:09:13 -05:00
Guilhem Lavaux	e44d51442d	Updated again cosmotoolbox	2013-02-19 11:30:03 -05:00
Guilhem Lavaux	e41c26a46c	Imported latest snapshot of cosmotoolbox	2013-02-19 11:18:20 -05:00
Guilhem Lavaux	a53a757d5a	Use the modern output of stackVoidsZero to determine the voids to extract	2013-02-19 11:17:27 -05:00
P.M. Sutter	dd68b1f91c	harmonized subsample defition between generateMock and prepareCatalogs	2013-02-18 08:28:26 -06:00
P.M. Sutter	1a62f691ef	removed the maxkeep criterion in subsampling	2013-02-18 07:11:27 -06:00
P.M. Sutter	3a12e32f2c	scripts now report status even when running in background	2013-02-15 13:48:04 -06:00
P.M. Sutter	e13d5b6173	cleaned up sdss dr9 stacks	2013-02-15 13:42:06 -06:00
P.M. Sutter	646da06ef8	updated parameter files to work with new halo file convention	2013-02-15 13:10:09 -06:00
P.M. Sutter	152e062fc4	added prunevoids parameter file	2013-02-14 08:38:24 -06:00
P.M. Sutter	0b4644471a	fixed combining stacks with zobov cuts	2013-02-11 19:29:50 -06:00
P.M. Sutter	ae6ebe986c	added the new HOD parameters to config files	2013-02-11 14:18:39 -06:00
P.M. Sutter	ee87db1517	added ability to do many HOD runs easily	2013-02-11 14:17:39 -06:00
P.M. Sutter	85e05aa696	improved inertia calculation and now doing bootstrap errors	2013-02-11 13:35:24 -06:00
P.M. Sutter	8e1b94949d	now also compute K-S statistic among different number functions while plotting	2013-02-11 08:56:20 -06:00
P.M. Sutter	168ef7a0d7	merged guilhem's and my updates	2013-02-09 14:12:40 -06:00
P.M. Sutter	950c6e810a	start of shape measurement in void outputs; some improvements and bug fixes to AP analysis	2013-02-09 14:08:44 -06:00
Guilhem Lavaux	a6f33db5aa	Convert km/s to Mpc/h for the centers of voids	2013-02-05 14:40:17 -06:00
Guilhem Lavaux	160753a7b0	Be more resilient to change of text format for centers	2013-01-29 16:19:25 -05:00
Guilhem Lavaux	01eedc1e70	Merge branch 'master' of https://bitbucket.org/cosmicvoids/void_identification	2013-01-29 15:10:15 -05:00
Guilhem Lavaux	2b807e26bd	Added detection of the support for march=native (solve healpy building issue on old compilers)	2013-01-29 15:09:40 -05:00
Guilhem Lavaux	116cd950e3	Added support for regeneration (to finely test impact of peculiar velocities)	2013-01-29 14:02:00 -06:00
Guilhem Lavaux	f209b89565	Reactivated the density threshold test	2013-01-29 14:00:23 -06:00
Guilhem Lavaux	5fb3adfc89	Fixed potential memory corruption while loading particle information. Slightly reworked the source code	2013-01-29 13:59:25 -06:00
Guilhem Lavaux	9bd0cbbb88	Fixed regeneration step in generateMock. Fixed gadget loading (missing initialization for multiple files)	2013-01-29 13:58:12 -06:00
P.M. Sutter	2584645520	added new data type for inputs, more flexible handling of halo catalog file names	2013-01-24 05:24:18 -06:00
Guilhem Lavaux	64e226c786	Be compatible with older version of the parameter file (without is_observation)	2013-01-21 21:38:38 -05:00
Guilhem Lavaux	361ab5b617	Merge branch 'master' of ssh://bitbucket.org/cosmicvoids/void_identification	2013-01-19 12:17:02 -05:00
Guilhem Lavaux	9ce6b3f683	Recount the number of adjacencies, which is not fully preserved by the merging and can cause assertion failure in other software	2013-01-19 12:16:52 -05:00
Guilhem Lavaux	61bb0684cc	Adjusted showSliceExact for new evolution of the file formats. Do proper translation/rescaling/rotation if requested	2013-01-19 12:16:04 -05:00
Guilhem Lavaux	da9f7ff4ad	Reposition the particles according to ranges and not length/2 (as designed at the beginning)	2013-01-19 12:15:10 -05:00
Guilhem Lavaux	b410694f6a	Added an assertion check to trouble shoot potential SEGV	2013-01-19 12:14:08 -05:00
P.M. Sutter	3cb739a6d2	Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification	2013-01-18 09:56:57 -06:00