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Recount the number of adjacencies, which is not fully preserved by the merging and can cause assertion failure in other software

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This commit is contained in:
Guilhem Lavaux 2013-01-19 12:16:52 -05:00
parent 61bb0684cc
commit 9ce6b3f683
1 changed files with 29 additions and 4 deletions
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33
zobov/voztie.c
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@ -8,6 +8,7 @@ int main(int argc, char *argv[]) {
FILE *part, *adj, *vol;
char partfile[200], *suffix, adjfile[200], volfile[200], *outDir;
float *vols, volstemp;
int *cnt_adj;
PARTADJ *adjs;
@ -78,13 +79,17 @@ int main(int argc, char *argv[]) {
if (mockIndex == -1) mockIndex = np;
// END PMS
cnt_adj = (int *)malloc(np*sizeof(int));
if (cnt_adj == NULL)
printf("Could not allocate cnt_adj.\n");
adjs = (PARTADJ *)malloc(np*sizeof(PARTADJ));
if (adjs == NULL) printf("Couldn't allocate adjs.\n");
vols = (float *)malloc(np*sizeof(float));
if (vols == NULL) printf("Couldn't allocate vols.\n");
orig = (int *)malloc(nvpmax*sizeof(int));
if (orig == NULL) printf("Couldn't allocate orig.\n");
if ((vols == NULL) || (orig == NULL) || (adjs == NULL)) {
if ((cnt_adj==NULL) || (vols == NULL) || (orig == NULL) || (adjs == NULL)) {
printf("Not enough memory to allocate. Exiting.\n");
exit(0);
}
@ -238,11 +243,24 @@ printf("\n");
// END OMS
/* Adjacencies: first the numbers of adjacencies,
and the number we're actually going to write per particle */
// Recount the number of adjacencies after merge
for(i=0;i<mockIndex;i++)
cnt_adj[i] = 0;
for(i=0;i<mockIndex;i++)
{
for (j=0;j<adjs[i].nadj;j++)
{
cnt_adj[adjs[i].adj[j]]++;
cnt_adj[i]++;
}
}
// PMS
for (i=0;i<mockIndex;i++)
//for (i=0;i<np;i++)
// END PMS
fwrite(&adjs[i].nadj,1,sizeof(int),adj);
fwrite(&cnt_adj[i],1,sizeof(int),adj);
/* Now the lists of adjacencies (without double counting) */
// PMS
@ -253,9 +271,11 @@ printf("\n");
nout = 0;
for (j=0;j<adjs[i].nadj; j++) if (adjs[i].adj[j] > i) nout++;
fwrite(&nout,1,sizeof(int),adj);
for (j=0;j<adjs[i].nadj; j++)
if (adjs[i].adj[j] > i)
for (j=0;j<adjs[i].nadj; j++) {
int id = adjs[i].adj[j];
if (id > i)
fwrite(&(adjs[i].adj[j]),1,sizeof(int),adj);
}
}
fclose(adj);
@ -275,5 +295,10 @@ printf("\n");
fclose(vol);
free(vols);
free(cnt_adj);
free(adjs);
free(orig);
return(0);
}