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Author SHA1 Message Date
Guilhem Lavaux
a4cb64e6c4 Fixed memory bugs in generateMock 2012-11-22 12:16:35 -06:00
Guilhem Lavaux
26f6864f47 Large rework of generateMock for handling partial load of snapshots and thus larger simulations. Work not yet complete. 2012-11-22 10:51:50 -05:00
Guilhem Lavaux
60d77d3ae0 Redirect using &> and not >& 2012-11-21 10:17:57 -05:00
Guilhem Lavaux
53bfb786cb Fix HDF5 URL 2012-11-21 09:59:24 -05:00
Guilhem Lavaux
2889058a74 Fix handling of parameters 2012-11-21 08:36:39 -06:00
Guilhem Lavaux
2696ad20d1 Fixed SEGV in case the underlying simulation data does not support uniqueID 2012-11-20 19:21:21 -06:00
Guilhem Lavaux
7f8f0441b0 Have CMake adjust the tool path in prepareCatalogs.in.py 2012-11-20 17:56:13 -06:00
Guilhem Lavaux
72cd279b25 Use attribute infrastructure to pass uniqueID tag. 2012-11-20 17:16:45 -05:00
Guilhem Lavaux
fe62b7ef8d Imported attribute support from latest CosmoTool 2012-11-20 17:07:55 -05:00
Guilhem Lavaux
a91851de76 Merge 2012-11-20 17:06:20 -05:00
Guilhem Lavaux
7d90960783 Added support for unordered particle id 2012-11-20 10:05:24 -05:00
Guilhem Lavaux
03782c8843 Emit the particle id and not its rank. At the moment the two are equivalent but will change. 2012-11-20 09:56:24 -05:00
P.M. Sutter
06c8ddc26e more consistent handling of redshift bounaries in pruneVoids 2012-11-19 07:51:01 -06:00
P.M. Sutter
80c2b7f603 more bug fixes for the minimum halo mass cuts...sigh 2012-11-18 22:47:49 -06:00
Guilhem Lavaux
9e79c784f3 Merge 2012-11-18 21:57:36 -05:00
P.M. Sutter
9d97522472 more bug fixes 2012-11-18 18:09:18 -06:00
P.M. Sutter
0b54a31d0c many bug fixes from the previous update; new changes appear to work now 2012-11-18 14:23:50 -06:00
P.M. Sutter
90964d2be3 fixed bugs associated with saving RA and Dec 2012-11-17 13:01:39 -06:00
Paul Matt Sutter
10dfe29a26 Supports minimum halo mass cuts. Start of scripts to generate masked mock sets, some files added to later support more general preparation scripts 2012-11-17 13:00:54 -05:00
Paul Matt Sutter
a53e3bf290 reconfigured to put RA, Dec, redshift, and unique (catalog) ID in the binary ZOBOV file 2012-11-17 02:49:02 -05:00
P.M. Sutter
7c3d7a9d31 merged both mine and nico's fix 2012-11-16 09:59:21 -06:00
P.M. Sutter
0ef211a1cc some small bug fixes, also prepared prunveVoids to potentially remove voids based on density contrast criteria 2012-11-16 09:48:02 -06:00
nhamaus
3ca6699603 fix so that end of prunevoids is correctly detected 2012-11-16 09:58:33 +01:00
P.M. Sutter
971cf21ea2 potential fix so that end of prunevoids is correctly detected 2012-11-15 10:11:51 -06:00
P.M. Sutter
b6359bb0a9 number of zobov threads and subdivisions now part of dataset definition 2012-11-15 07:31:41 -06:00
P.M. Sutter
6868a026f5 fixed bug where zobov wasn't getting correct nmber of threads; fixed and now hard-coded to 2 parallel threads 2012-11-15 06:47:06 -06:00
P.M. Sutter
443b4bdeec fixed bug in gadget generation script; prepareGadget now uses separate parameter files; support for random catalogs now enabled 2012-11-15 06:37:59 -06:00
P.M. Sutter
292afacaf5 now includes automatic detection and handling of periodic boxes; all logic for dealing with this moved to pruneVoids 2012-11-14 06:31:53 -06:00
P.M. Sutter
390fb2f4e2 bug fixes to plotting. prepareCatalogs now handles gadget files; prepareGadgetCatalogs now deprecated 2012-11-14 04:37:30 -06:00
P.M. Sutter
afe22f71fa added start of extra plotting scripts for comparison across data sets 2012-11-13 15:23:37 -06:00
P.M. Sutter
08ea4ef0a2 more informative sample_info file 2012-11-13 13:56:44 -06:00
P.M. Sutter
93ba823764 plotting now supports cumulative number distributions 2012-11-13 13:55:40 -06:00
P.M. Sutter
9cdc037946 some bugs fixed related to gadget unit handling 2012-11-09 08:06:27 -06:00
P.M. Sutter
9c10c3714f fixed bug for data unit, and fixed bug for detecting completion of pruning 2012-11-09 07:10:08 -06:00
P.M. Sutter
ed3f18f6d0 can now select gadget units in preparation script 2012-11-08 16:06:06 -06:00
nhamaus
95db063b7b fixed gadget input unit to Mpc/h 2012-11-08 18:03:16 +01:00
Guilhem Lavaux
dff81063d4 Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification 2012-11-08 10:00:16 -05:00
Guilhem Lavaux
9b8ce57a97 Imported code for flexible gadget units. Imported load ramses code. Always invoke metricTransform. Add the option to import box parameters from an already existing mock catalog 2012-11-08 10:00:08 -05:00
P.M. Sutter
053c46e57b fix to allow switching on/off cosmological distortions 2012-11-07 11:51:51 -06:00
P.M. Sutter
83073ecf20 Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification 2012-11-07 09:27:32 -06:00
P.M. Sutter
de5a7cb354 fix to have separate file name and redshift lists in script generation 2012-11-07 09:27:11 -06:00
Guilhem Lavaux
058b12bb3f healpy setup.py also needs to know where cfitsio is located 2012-11-06 15:56:03 -05:00
Guilhem Lavaux
a59b9aae84 Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification 2012-11-06 15:42:18 -05:00
Guilhem Lavaux
15f03654d7 Check if python < 2.7, and build argparse if necessary 2012-11-06 15:42:11 -05:00
P.M. Sutter
8c6add3311 Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification 2012-11-06 14:41:36 -06:00
P.M. Sutter
61acd59383 futher fixes for handling sub-volumes in analysis 2012-11-06 14:41:09 -06:00
Guilhem Lavaux
0f53c385b8 Cleaned up shown variables by marking most URLs as 'advanced variables' 2012-11-06 15:36:15 -05:00
Guilhem Lavaux
200f6de44e Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification 2012-11-06 13:26:11 -05:00
Guilhem Lavaux
c9d3a5540e Added argparse/setuptools. It is temporarily set to always on while I figure a way of detection python version 2012-11-06 13:25:25 -05:00
nhamaus
4764b42a63 changed baseResolution to float 2012-11-06 17:25:29 +01:00