After compiling, go to the pipeline directory.

Edit the parameters at the top of prepareGadgetCatalog.py: decide
where to put outputs, how many redshifts to do, how many slices,
subdivisions, subsamples, etc. etc.

Note that eventually prepareGadgetCatalog will be replaced by the more
general and flexible prepareCatalogs.

prepareGadgetCatalogs will produce a pipeline script for each
subsampling you choose. If you have multiple redshift particle files,
and choose multiple slices and/or subdivisions, they will be packaged
in the same pipeline script.

Run "./generateCatalog.py [name of pipeline script]" for each script
written by prepareGadgetCatalog. This will run generateMock, zobov,
and pruneVoids. At the end of it, you should have a void catalog for
each redshift, slice, and subdivision.

Check the logfiles for any error messages.

See the README of the public void catalog for the format of the
outputs.

I'm also working on incorporating plotting into the pipeline script,
so that you can immediately get some basic info about the voids.

Please do not change the outputs of pruneVoids etc. without
discussion, since further analysis relies on the current formats.

If you're wondering why these scripts are rather complex, it's because
it can also support A-P analysis, which is much more complicated :)

We can talk about ways to incorporate your analysis into the pipline
and to have your tools under this umbrella.

Good luck!