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Author	SHA1	Message	Date
Guilhem Lavaux	2696ad20d1	Fixed SEGV in case the underlying simulation data does not support uniqueID	2012-11-20 19:21:21 -06:00
Guilhem Lavaux	7f8f0441b0	Have CMake adjust the tool path in prepareCatalogs.in.py	2012-11-20 17:56:13 -06:00
Guilhem Lavaux	72cd279b25	Use attribute infrastructure to pass uniqueID tag.	2012-11-20 17:16:45 -05:00
Guilhem Lavaux	fe62b7ef8d	Imported attribute support from latest CosmoTool	2012-11-20 17:07:55 -05:00
Guilhem Lavaux	a91851de76	Merge	2012-11-20 17:06:20 -05:00
Guilhem Lavaux	7d90960783	Added support for unordered particle id	2012-11-20 10:05:24 -05:00
Guilhem Lavaux	03782c8843	Emit the particle id and not its rank. At the moment the two are equivalent but will change.	2012-11-20 09:56:24 -05:00
P.M. Sutter	06c8ddc26e	more consistent handling of redshift bounaries in pruneVoids	2012-11-19 07:51:01 -06:00
P.M. Sutter	80c2b7f603	more bug fixes for the minimum halo mass cuts...sigh	2012-11-18 22:47:49 -06:00
Guilhem Lavaux	9e79c784f3	Merge	2012-11-18 21:57:36 -05:00
P.M. Sutter	9d97522472	more bug fixes	2012-11-18 18:09:18 -06:00
P.M. Sutter	0b54a31d0c	many bug fixes from the previous update; new changes appear to work now	2012-11-18 14:23:50 -06:00
P.M. Sutter	90964d2be3	fixed bugs associated with saving RA and Dec	2012-11-17 13:01:39 -06:00
Paul Matt Sutter	10dfe29a26	Supports minimum halo mass cuts. Start of scripts to generate masked mock sets, some files added to later support more general preparation scripts	2012-11-17 13:00:54 -05:00
Paul Matt Sutter	a53e3bf290	reconfigured to put RA, Dec, redshift, and unique (catalog) ID in the binary ZOBOV file	2012-11-17 02:49:02 -05:00
P.M. Sutter	7c3d7a9d31	merged both mine and nico's fix	2012-11-16 09:59:21 -06:00
P.M. Sutter	0ef211a1cc	some small bug fixes, also prepared prunveVoids to potentially remove voids based on density contrast criteria	2012-11-16 09:48:02 -06:00
nhamaus	3ca6699603	fix so that end of prunevoids is correctly detected	2012-11-16 09:58:33 +01:00
P.M. Sutter	971cf21ea2	potential fix so that end of prunevoids is correctly detected	2012-11-15 10:11:51 -06:00
P.M. Sutter	b6359bb0a9	number of zobov threads and subdivisions now part of dataset definition	2012-11-15 07:31:41 -06:00
P.M. Sutter	6868a026f5	fixed bug where zobov wasn't getting correct nmber of threads; fixed and now hard-coded to 2 parallel threads	2012-11-15 06:47:06 -06:00
P.M. Sutter	443b4bdeec	fixed bug in gadget generation script; prepareGadget now uses separate parameter files; support for random catalogs now enabled	2012-11-15 06:37:59 -06:00
P.M. Sutter	292afacaf5	now includes automatic detection and handling of periodic boxes; all logic for dealing with this moved to pruneVoids	2012-11-14 06:31:53 -06:00
P.M. Sutter	390fb2f4e2	bug fixes to plotting. prepareCatalogs now handles gadget files; prepareGadgetCatalogs now deprecated	2012-11-14 04:37:30 -06:00
P.M. Sutter	afe22f71fa	added start of extra plotting scripts for comparison across data sets	2012-11-13 15:23:37 -06:00
P.M. Sutter	08ea4ef0a2	more informative sample_info file	2012-11-13 13:56:44 -06:00
P.M. Sutter	93ba823764	plotting now supports cumulative number distributions	2012-11-13 13:55:40 -06:00
P.M. Sutter	9cdc037946	some bugs fixed related to gadget unit handling	2012-11-09 08:06:27 -06:00
P.M. Sutter	9c10c3714f	fixed bug for data unit, and fixed bug for detecting completion of pruning	2012-11-09 07:10:08 -06:00
P.M. Sutter	ed3f18f6d0	can now select gadget units in preparation script	2012-11-08 16:06:06 -06:00
nhamaus	95db063b7b	fixed gadget input unit to Mpc/h	2012-11-08 18:03:16 +01:00
Guilhem Lavaux	dff81063d4	Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification	2012-11-08 10:00:16 -05:00
Guilhem Lavaux	9b8ce57a97	Imported code for flexible gadget units. Imported load ramses code. Always invoke metricTransform. Add the option to import box parameters from an already existing mock catalog	2012-11-08 10:00:08 -05:00
P.M. Sutter	053c46e57b	fix to allow switching on/off cosmological distortions	2012-11-07 11:51:51 -06:00
P.M. Sutter	83073ecf20	Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification	2012-11-07 09:27:32 -06:00
P.M. Sutter	de5a7cb354	fix to have separate file name and redshift lists in script generation	2012-11-07 09:27:11 -06:00
Guilhem Lavaux	058b12bb3f	healpy setup.py also needs to know where cfitsio is located	2012-11-06 15:56:03 -05:00
Guilhem Lavaux	a59b9aae84	Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification	2012-11-06 15:42:18 -05:00
Guilhem Lavaux	15f03654d7	Check if python < 2.7, and build argparse if necessary	2012-11-06 15:42:11 -05:00
P.M. Sutter	8c6add3311	Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification	2012-11-06 14:41:36 -06:00
P.M. Sutter	61acd59383	futher fixes for handling sub-volumes in analysis	2012-11-06 14:41:09 -06:00
Guilhem Lavaux	0f53c385b8	Cleaned up shown variables by marking most URLs as 'advanced variables'	2012-11-06 15:36:15 -05:00
Guilhem Lavaux	200f6de44e	Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification	2012-11-06 13:26:11 -05:00
Guilhem Lavaux	c9d3a5540e	Added argparse/setuptools. It is temporarily set to always on while I figure a way of detection python version	2012-11-06 13:25:25 -05:00
nhamaus	4764b42a63	changed baseResolution to float	2012-11-06 17:25:29 +01:00
Guilhem Lavaux	0e2f551f7a	Added Healpy to the dependencies to build	2012-11-06 10:58:16 -05:00
P.M. Sutter	e2ee7b22dd	removed periodic boundary handing in stacking, since we may be dealing with subsections	2012-11-06 08:01:08 -06:00
Guilhem Lavaux	da189a653b	Removed spurious NetCDFFile import	2012-11-05 19:26:03 -05:00
Guilhem Lavaux	de9797d6df	Merge branch 'master' of https://bitbucket.org/cosmicvoids/void_identification	2012-11-05 17:30:52 -05:00
Guilhem Lavaux	d6d71174de	Enforce the location where python libraries are installed (/lib and not /lib64 or some other random directory)	2012-11-05 16:30:18 -06:00