268 commits

Author	SHA1	Message	Date
P.M. Sutter	260385d9d0	fix to prepareCatalogs to correctly handle non-lightconed outputs	2013-02-25 23:04:24 -06:00
P.M. Sutter	343250de42	removed spurius line from launchPrune	2013-02-25 15:32:08 -06:00
P.M. Sutter	a7c352975c	signal end of script in prepareCatalogs	2013-02-25 14:33:14 -06:00
P.M. Sutter	fa7264e4ee	cleaned up logic and output handling in prunevoids; added combined SDSS analysis script; added data preparation scripts	2013-02-25 12:30:24 -06:00
Guilhem Lavaux	ecb4479178	Merge branch 'master' of https://bitbucket.org/cosmicvoids/void_identification	2013-02-24 14:15:34 -05:00
Guilhem Lavaux	e0c2862d2c	Added some velocity field stacking support	2013-02-24 14:15:21 -05:00
P.M. Sutter	dd68b1f91c	harmonized subsample defition between generateMock and prepareCatalogs	2013-02-18 08:28:26 -06:00
P.M. Sutter	1a62f691ef	removed the maxkeep criterion in subsampling	2013-02-18 07:11:27 -06:00
P.M. Sutter	3a12e32f2c	scripts now report status even when running in background	2013-02-15 13:48:04 -06:00
P.M. Sutter	0b4644471a	fixed combining stacks with zobov cuts	2013-02-11 19:29:50 -06:00
P.M. Sutter	ee87db1517	added ability to do many HOD runs easily	2013-02-11 14:17:39 -06:00
P.M. Sutter	168ef7a0d7	merged guilhem's and my updates	2013-02-09 14:12:40 -06:00
P.M. Sutter	950c6e810a	start of shape measurement in void outputs; some improvements and bug fixes to AP analysis	2013-02-09 14:08:44 -06:00
Guilhem Lavaux	116cd950e3	Added support for regeneration (to finely test impact of peculiar velocities)	2013-01-29 14:02:00 -06:00
P.M. Sutter	2584645520	added new data type for inputs, more flexible handling of halo catalog file names	2013-01-24 05:24:18 -06:00
P.M. Sutter	ae9701e99c	replaced void shape fitter with rudimentary moment of inertia calculation	2013-01-18 09:56:31 -06:00
P.M. Sutter	ea58ff2b83	made default profile bin size 'auto'	2013-01-17 09:31:13 -06:00
P.M. Sutter	e9b2697bc7	fixed printout of subsampling	2012-12-19 08:11:43 -06:00
P.M. Sutter	8a4191972b	more updates to preparation scripts	2012-12-18 12:13:06 -06:00
P.M. Sutter	c7b9a4f14b	further enhancements to void merger trees	2012-12-15 21:16:03 -06:00
P.M. Sutter	dee217babf	better handing of HOD	2012-12-09 20:26:54 -06:00
P.M. Sutter	2cdfce6cbf	more flexible handling of masking data sets	2012-12-07 22:57:07 -06:00
P.M. Sutter	6e18299ade	another attempt at making the jobSuccessful call work; some other minor fixes	2012-12-07 08:11:28 -06:00
P.M. Sutter	f155564d6d	fix to halo catalog handling	2012-12-04 21:21:30 -06:00
P.M. Sutter	3cb2a990da	halo catalog file format now handled correctly	2012-12-03 11:09:53 -06:00
P.M. Sutter	2c3fe1b35d	fixed support for masked mock data sets; now skips over comments in halo catalogs	2012-12-03 11:00:51 -06:00
P.M. Sutter	f3f96b0dcd	masking of mock catalogs now works	2012-12-02 13:08:20 -06:00
P.M. Sutter	7484bebbfa	HOD now more general; can support LANL halo catalog files	2012-12-01 16:37:40 -06:00
P.M. Sutter	fec23b5c4f	cleaned up the prepare catalog script to support more general halo files	2012-12-01 08:46:50 -06:00
P.M. Sutter	c781c5ee50	applyMaskToMock now accepts build path	2012-12-01 08:21:33 -06:00
Guilhem Lavaux	082bfde711	Moved the script to its final place. Sigh...	2012-11-30 09:48:12 -05:00
P.M. Sutter	ba2abd1bd6	fixed merge	2012-11-29 11:22:15 -06:00
P.M. Sutter	022eec19bb	some bug fixes to the a-p analysis scripts; fixed major bug in prunevoids; updated catalog release scripts	2012-11-29 11:14:59 -06:00
Guilhem Lavaux	60d77d3ae0	Redirect using &> and not >&	2012-11-21 10:17:57 -05:00
Guilhem Lavaux	a91851de76	Merge	2012-11-20 17:06:20 -05:00
P.M. Sutter	06c8ddc26e	more consistent handling of redshift bounaries in pruneVoids	2012-11-19 07:51:01 -06:00
P.M. Sutter	80c2b7f603	more bug fixes for the minimum halo mass cuts...sigh	2012-11-18 22:47:49 -06:00
Guilhem Lavaux	9e79c784f3	Merge	2012-11-18 21:57:36 -05:00
P.M. Sutter	9d97522472	more bug fixes	2012-11-18 18:09:18 -06:00
P.M. Sutter	0b54a31d0c	many bug fixes from the previous update; new changes appear to work now	2012-11-18 14:23:50 -06:00
P.M. Sutter	90964d2be3	fixed bugs associated with saving RA and Dec	2012-11-17 13:01:39 -06:00
Paul Matt Sutter	10dfe29a26	Supports minimum halo mass cuts. Start of scripts to generate masked mock sets, some files added to later support more general preparation scripts	2012-11-17 13:00:54 -05:00
P.M. Sutter	7c3d7a9d31	merged both mine and nico's fix	2012-11-16 09:59:21 -06:00
P.M. Sutter	0ef211a1cc	some small bug fixes, also prepared prunveVoids to potentially remove voids based on density contrast criteria	2012-11-16 09:48:02 -06:00
nhamaus	3ca6699603	fix so that end of prunevoids is correctly detected	2012-11-16 09:58:33 +01:00
P.M. Sutter	971cf21ea2	potential fix so that end of prunevoids is correctly detected	2012-11-15 10:11:51 -06:00
P.M. Sutter	b6359bb0a9	number of zobov threads and subdivisions now part of dataset definition	2012-11-15 07:31:41 -06:00
P.M. Sutter	6868a026f5	fixed bug where zobov wasn't getting correct nmber of threads; fixed and now hard-coded to 2 parallel threads	2012-11-15 06:47:06 -06:00
P.M. Sutter	443b4bdeec	fixed bug in gadget generation script; prepareGadget now uses separate parameter files; support for random catalogs now enabled	2012-11-15 06:37:59 -06:00
P.M. Sutter	292afacaf5	now includes automatic detection and handling of periodic boxes; all logic for dealing with this moved to pruneVoids	2012-11-14 06:31:53 -06:00