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Author SHA1 Message Date
P.M. Sutter
6868a026f5 fixed bug where zobov wasn't getting correct nmber of threads; fixed and now hard-coded to 2 parallel threads 2012-11-15 06:47:06 -06:00
P.M. Sutter
443b4bdeec fixed bug in gadget generation script; prepareGadget now uses separate parameter files; support for random catalogs now enabled 2012-11-15 06:37:59 -06:00
P.M. Sutter
292afacaf5 now includes automatic detection and handling of periodic boxes; all logic for dealing with this moved to pruneVoids 2012-11-14 06:31:53 -06:00
P.M. Sutter
390fb2f4e2 bug fixes to plotting. prepareCatalogs now handles gadget files; prepareGadgetCatalogs now deprecated 2012-11-14 04:37:30 -06:00
P.M. Sutter
afe22f71fa added start of extra plotting scripts for comparison across data sets 2012-11-13 15:23:37 -06:00
P.M. Sutter
08ea4ef0a2 more informative sample_info file 2012-11-13 13:56:44 -06:00
P.M. Sutter
93ba823764 plotting now supports cumulative number distributions 2012-11-13 13:55:40 -06:00
P.M. Sutter
9cdc037946 some bugs fixed related to gadget unit handling 2012-11-09 08:06:27 -06:00
P.M. Sutter
9c10c3714f fixed bug for data unit, and fixed bug for detecting completion of pruning 2012-11-09 07:10:08 -06:00
P.M. Sutter
ed3f18f6d0 can now select gadget units in preparation script 2012-11-08 16:06:06 -06:00
nhamaus
95db063b7b fixed gadget input unit to Mpc/h 2012-11-08 18:03:16 +01:00
Guilhem Lavaux
dff81063d4 Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification 2012-11-08 10:00:16 -05:00
Guilhem Lavaux
9b8ce57a97 Imported code for flexible gadget units. Imported load ramses code. Always invoke metricTransform. Add the option to import box parameters from an already existing mock catalog 2012-11-08 10:00:08 -05:00
P.M. Sutter
053c46e57b fix to allow switching on/off cosmological distortions 2012-11-07 11:51:51 -06:00
P.M. Sutter
83073ecf20 Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification 2012-11-07 09:27:32 -06:00
P.M. Sutter
de5a7cb354 fix to have separate file name and redshift lists in script generation 2012-11-07 09:27:11 -06:00
Guilhem Lavaux
058b12bb3f healpy setup.py also needs to know where cfitsio is located 2012-11-06 15:56:03 -05:00
Guilhem Lavaux
a59b9aae84 Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification 2012-11-06 15:42:18 -05:00
Guilhem Lavaux
15f03654d7 Check if python < 2.7, and build argparse if necessary 2012-11-06 15:42:11 -05:00
P.M. Sutter
8c6add3311 Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification 2012-11-06 14:41:36 -06:00
P.M. Sutter
61acd59383 futher fixes for handling sub-volumes in analysis 2012-11-06 14:41:09 -06:00
Guilhem Lavaux
0f53c385b8 Cleaned up shown variables by marking most URLs as 'advanced variables' 2012-11-06 15:36:15 -05:00
Guilhem Lavaux
200f6de44e Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification 2012-11-06 13:26:11 -05:00
Guilhem Lavaux
c9d3a5540e Added argparse/setuptools. It is temporarily set to always on while I figure a way of detection python version 2012-11-06 13:25:25 -05:00
nhamaus
4764b42a63 changed baseResolution to float 2012-11-06 17:25:29 +01:00
Guilhem Lavaux
0e2f551f7a Added Healpy to the dependencies to build 2012-11-06 10:58:16 -05:00
P.M. Sutter
e2ee7b22dd removed periodic boundary handing in stacking, since we may be dealing with subsections 2012-11-06 08:01:08 -06:00
Guilhem Lavaux
da189a653b Removed spurious NetCDFFile import 2012-11-05 19:26:03 -05:00
Guilhem Lavaux
de9797d6df Merge branch 'master' of https://bitbucket.org/cosmicvoids/void_identification 2012-11-05 17:30:52 -05:00
Guilhem Lavaux
d6d71174de Enforce the location where python libraries are installed (/lib and not /lib64 or some other random directory) 2012-11-05 16:30:18 -06:00
Guilhem Lavaux
ffb41cc94a Enforces /lib/ (anot /lib64/ or something else) for dependencies 2012-11-05 16:13:44 -06:00
Guilhem Lavaux
bc9ea4aca3 Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification 2012-11-05 15:36:51 -06:00
Guilhem Lavaux
f1b1ff8552 Old cruft 2012-11-05 15:36:45 -06:00
Guilhem Lavaux
c4a157289b Removed generated cython file 2012-11-05 13:35:51 -05:00
Guilhem Lavaux
41a8f75084 Use PYTHON_LOCAL_SITE_PACKAGE variable and not PYTHONPATH while invoking python*.cmake scripts 2012-11-05 09:57:18 -05:00
Guilhem Lavaux
2a452cd98c Made Cairo optional. drawVoids is not built if Cairo is not found. 2012-11-02 11:35:09 -04:00
P.M. Sutter
21431f9a31 added a-p analysis script to repo; some minor bug fixes to adjust tools to work with simulation data 2012-11-02 08:19:23 -05:00
Guilhem Lavaux
fb98f89679 Properly build and install the python tools in BINDIR/ext_build/python. Specify more dependencies. 2012-11-01 22:16:13 -04:00
Guilhem Lavaux
a1b3fa7290 Added another script to setup the environment prior to run a given executable 2012-11-01 21:30:44 -04:00
Guilhem Lavaux
25f2244d49 Improved handling of openmp flags using set_target_properties 2012-11-01 21:28:38 -04:00
Guilhem Lavaux
de6dbd3051 Re-formatted README files for screens with limited number of characters per line. :-) 2012-11-01 17:42:39 -04:00
Guilhem Lavaux
03c7aadc13 Generate a shell script that sets the correct environment for python 2012-11-01 17:38:00 -04:00
Guilhem Lavaux
e91ac15004 Generate a shell script that sets the correct environment for python 2012-11-01 17:37:56 -04:00
Guilhem Lavaux
430d938401 Added pic option to hdf5 and netcdf build. Fixed return variable in python build script. 2012-11-01 17:20:30 -04:00
Guilhem Lavaux
f7ffe20b69 Fixed cmake scripts to run python build/install. New script to run python scripts. 2012-11-01 17:03:25 -04:00
Guilhem Lavaux
cd229df01f Added another visualization tool for slices of voids 2012-11-01 13:51:51 -04:00
P.M. Sutter
d9a24a304e added README and cleaned up prepareGadgetCatalog script 2012-11-01 08:39:21 -05:00
Guilhem Lavaux
d18fbdf10b Ported python code to netCDF4 package (support most recent netcdf4 on-disk fornat) 2012-10-31 15:00:43 -04:00
Guilhem Lavaux
e380538e66 Cleanup coding style 2012-10-31 14:51:59 -04:00
Guilhem Lavaux
eaa35ea07e Build python dependencies: Python, NetCDF4 2012-10-31 14:50:41 -04:00