120 commits

Author	SHA1	Message	Date
Guilhem Lavaux	39d10fdd6b	Enforce particles to be in the boxsize for the SDF loader	2013-03-07 09:33:21 -06:00
Guilhem Lavaux	b8fa109008	Fixed position scaling in SDF	2013-03-06 00:59:28 +01:00
Guilhem Lavaux	1c1c8b778e	Fixes to SDF loader	2013-03-05 14:56:44 +01:00
Guilhem Lavaux	132d96adf5	SDF: Do not bulk copy the header but instead copy its components	2013-03-05 08:42:34 -05:00
P.M. Sutter	eca4ef4362	added to output line to signal which subsampling has been done; output number of particles on resubsample	2013-03-04 08:56:07 -06:00
P.M. Sutter	69aa5b2676	removed assertion that particle IDs are less than number of particles	2013-03-03 23:30:15 -06:00
Guilhem Lavaux	5d9dad1439	Updated Copyright/License	2013-03-02 20:23:33 -05:00
Guilhem Lavaux	bce9ac1dd3	Removed the possibility of a later version. The patent mess is unclear.	2013-03-02 18:33:33 -05:00
Guilhem Lavaux	aa38661b65	Added copyright/license notice	2013-03-02 18:30:40 -05:00
Guilhem Lavaux	69def32595	Added more assertion checks. Fixed default value for the subsampling.	2013-03-02 10:44:15 -06:00
Guilhem Lavaux	3c9ad41132	Activated call to SDF loader in generateMock	2013-03-02 09:57:11 -06:00
Guilhem Lavaux	a611d77c5d	Fix in multidark loader: attributes must not be touched once created.	2013-03-01 08:50:41 -06:00
Guilhem Lavaux	99f1b3888e	Fixed spurious braces and a SEGV in multidark loading procedure	2013-02-28 18:24:23 -06:00
Guilhem Lavaux	14b52c4248	Finished subsubsampling on regeneration	2013-02-28 17:09:27 -06:00
Guilhem Lavaux	8625ab633c	Added support for subsubsampling	2013-02-28 17:02:30 -05:00
Guilhem Lavaux	91901c0186	Use proper interface to reset the preselector	2013-02-27 14:08:49 -05:00
Guilhem Lavaux	393b6e756e	Fixed duplicated name error in generateFromCatalog. Fixed numPart setup from the exact number of accepted particles	2013-02-27 12:59:28 -06:00
Guilhem Lavaux	5b8a97d170	Merged	2013-02-27 12:41:37 -06:00
Guilhem Lavaux	7e121e5b5d	Reset the number generator before rerunning the preprocessor	2013-02-27 12:40:11 -06:00
Guilhem Lavaux	3f7b54a3d2	Added (optional for the moment) SDF support in simulation_loaders.	2013-02-27 13:35:59 -05:00
Guilhem Lavaux	d291651ff1	Factored out the basic preprocessing code (partially inline subsampling)	2013-02-26 17:04:13 -05:00
Guilhem Lavaux	5cf7a94538	Moved subsampling to the loaders to be able to do online subsampling (only implemented for gadget and multidark so far, the other coming in...)	2013-02-25 12:29:09 -05:00
P.M. Sutter	7f020f15e5	large files now appear to be supported	2013-02-19 13:30:01 -06:00
Guilhem Lavaux	acd9329b06	Splitted 64 bits into two 32 bits as NetCDF does not support 64 bits integers for storage. (Warning not tested)	2013-02-19 14:19:07 -05:00
Guilhem Lavaux	6ca873989d	Use long instead of int for multidark loader	2013-02-19 13:25:41 -05:00
Guilhem Lavaux	9bd0cbbb88	Fixed regeneration step in generateMock. Fixed gadget loading (missing initialization for multiple files)	2013-01-29 13:58:12 -06:00
nhamaus	4338a08f44	fixed particle selection problem in generateMock	2013-01-17 15:10:25 +01:00
P.M. Sutter	82c021d478	Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification	2013-01-16 14:05:19 -06:00
Guilhem Lavaux	537b7c1f43	Huge memory leak: simulations were not destroyed while loading	2013-01-08 03:57:05 -05:00
P.M. Sutter	a7cdb80704	added observation flag in info file; stack voids now shifts particles based on redshift of subsample	2012-12-23 16:38:54 -06:00
P.M. Sutter	e9b2697bc7	fixed printout of subsampling	2012-12-19 08:11:43 -06:00
P.M. Sutter	b20ed47367	fix to uniqueID for catalog data	2012-12-09 21:51:46 -06:00
P.M. Sutter	6e18299ade	another attempt at making the jobSuccessful call work; some other minor fixes	2012-12-07 08:11:28 -06:00
P.M. Sutter	2c3fe1b35d	fixed support for masked mock data sets; now skips over comments in halo catalogs	2012-12-03 11:00:51 -06:00
P.M. Sutter	b77f4f4e9e	uniqueID now enabled for multidark	2012-11-30 07:53:41 -06:00
Guilhem Lavaux	4c5159823a	Removed cubic, Use cube from CosmoTool	2012-11-30 07:39:11 -05:00
Guilhem Lavaux	5783109225	Merge branch 'master' of https://bitbucket.org/cosmicvoids/void_identification	2012-11-30 07:36:00 -05:00
P.M. Sutter	ba2abd1bd6	fixed merge	2012-11-29 11:22:15 -06:00
P.M. Sutter	022eec19bb	some bug fixes to the a-p analysis scripts; fixed major bug in prunevoids; updated catalog release scripts	2012-11-29 11:14:59 -06:00
Guilhem Lavaux	d29f92529b	Moved simulation loaders into their own subdirectory.	2012-11-25 10:23:31 -05:00
Guilhem Lavaux	9f554e10ed	Use NetCDF4 file format for support for large variables	2012-11-24 17:27:12 -05:00
Guilhem Lavaux	602dc86be5	Re-added Flash. Splitted loaders into their own static library	2012-11-24 09:44:48 -06:00
Guilhem Lavaux	6fbf034768	Re-added ramses loader, multidark loader	2012-11-24 09:40:58 -06:00
Guilhem Lavaux	1a190a6be0	Added back Ramses loader	2012-11-23 14:42:57 -06:00
Guilhem Lavaux	745b073ed6	GenerateMock working with Gadget snapshots	2012-11-23 14:31:46 -06:00
Guilhem Lavaux	748f2c7107	Fixed scaling of boxsize to account for different units	2012-11-23 14:04:44 -05:00
Guilhem Lavaux	5573b82c44	Initialize variables in SimulationLoader	2012-11-23 14:01:09 -05:00
Guilhem Lavaux	91926434a4	Be more verbose	2012-11-23 13:57:00 -05:00
Guilhem Lavaux	cc28abc14d	Fixed detection of number of files in Gadget loader	2012-11-23 13:54:42 -05:00
Guilhem Lavaux	529024c5ab	Added missing loaders	2012-11-23 13:50:52 -05:00