rstiskalek
69d1f28fcc
add lambda200c calc
2022-11-25 12:23:43 +00:00
rstiskalek
e5208ed070
add note
2022-11-25 11:52:31 +00:00
rstiskalek
91bddb1d3a
remove not good comments
2022-11-25 11:45:47 +00:00
rstiskalek
9fe745b0b4
add center of mass
2022-11-25 10:54:09 +00:00
Richard Stiskalek
161c27d995
Particle match & file system & phase space ( #11 )
...
* Create file system
* add doc
* add n_sim n_snap directly to paths
* Move things to a single particle reader for consistency
* add docstring
* add srdcir, dumpdir and mmain_path
* make boxunits work with paths
* switch to using paths
* add tempdumpdir
* rm dependence on old functions
* rm comment
* rm unused import
* go back to all imports
* fix import bug
* rm dependence on old functions
* modernize code!
* fix typo
* fix typo
* update fits to new data structureing
* change docs
* add julia repo
* add setup
* add install commands
* ignore install files
* add array flattening
* update dependene
* add positions reader
* update manifest and projects
* add func
* update gitignore
* pos matching progress
* move file
* rm comment
* add velocities getter
* fix bug
* fix name bug
* fix path bug
* fix args func
* add redshift calculation to catalogues
* add shortcut to set n_sim and n_snap
* if cond bug
* add the cosine similarity
* add verbosit iterator
* add docs
* update README
* update README
* update README
2022-11-25 10:44:08 +00:00
Richard Stiskalek
c748c87e45
New filesystem, basic neighbours calculation ( #10 )
...
* simplify Planck catalogue
* add MCXC and base survey
* Add 2MPP classes
* move match to MCXC to Planck
* add halo catalogue
* rm comment
* rm unused imports
* Move conversion to box
* add min mass
* Run on all simulations
* rm old function
* add combined catalogue
* add halo positions
* add knn neighbors
* set to 5 sims for testing
* add docstring
* Switch to neighbours in a catalogue
* rename io to read
* fix indentation
* rename to read
* io -> read
* add import
* add RealisationMatcher
* io -> read
* add docstrings
* add search_sim_indiices
* update todo
* keep make_cat at 10 for now
* update nb
2022-11-22 10:00:01 +00:00
rstiskalek
f5bf04c46e
update nb
2022-11-20 14:11:35 +00:00
rstiskalek
6a9db75549
add pec redshift
2022-11-20 14:11:32 +00:00
rstiskalek
3352b06c1c
add units
2022-11-20 14:11:25 +00:00
rstiskalek
1d9789c08e
add vx
2022-11-20 14:11:19 +00:00
rstiskalek
1037aa4db9
add velocity conversion
2022-11-18 10:53:06 +00:00
rstiskalek
858a153fad
add box2cosmoredshift
2022-11-18 10:44:41 +00:00
rstiskalek
06d3fede95
add max snapshot
2022-11-14 16:24:53 +00:00
rstiskalek
f33bf0c3b2
add the maximum snapshot
2022-11-14 16:22:45 +00:00
rstiskalek
76349bab3f
add MPI and do for all boxes
2022-11-14 15:52:52 +00:00
Richard Stiskalek
17badf2652
X-ray data ( #9 )
...
* add xray reading
* add import
* add more comments
* add data
* add nb
* add MCXC shortcut
* add match indxs to Planck of MCXC
* add import
* update TODO
* update readme
* add famous clusters
* add 2mpp_groups
* shorten paths
* add 2M++ groups
* add import
* Update TODO
2022-11-10 07:40:44 +00:00
rstiskalek
f69def9878
Merge branch 'master' of https://github.com/Richard-Sti/galomatch
2022-11-06 21:02:57 +00:00
Richard Stiskalek
f0821c54bf
Clean up old functions ( #8 )
...
* update nbs
* rm unused functions
* simplify loading
* optionally return counts as well
* update TODO
* update TODO
2022-11-06 21:02:24 +00:00
rstiskalek
a3ccc029cd
update TODO
2022-11-06 21:01:43 +00:00
rstiskalek
760ba06689
update TODO
2022-11-06 20:59:39 +00:00
rstiskalek
d4f89fc343
optionally return counts as well
2022-11-06 20:58:57 +00:00
rstiskalek
d69012424e
simplify loading
2022-11-06 20:55:49 +00:00
rstiskalek
e4ec1c4daa
rm unused functions
2022-11-06 20:55:34 +00:00
rstiskalek
9291414572
update nbs
2022-11-06 20:53:58 +00:00
rstiskalek
a0f187d660
update TODO
2022-11-06 10:28:32 +00:00
Richard Stiskalek
d32eb5c134
Data loading shortcut ( #7 )
...
* add load_processed
* update TODO
2022-11-06 10:26:24 +00:00
rstiskalek
364f3b2137
rm blank
2022-11-06 10:06:48 +00:00
rstiskalek
859e3f4eb2
change density to mass/mpc^3
2022-11-06 10:06:40 +00:00
rstiskalek
5fa429ceb0
Update TODO
2022-11-06 09:11:21 +00:00
rstiskalek
91ad3166f8
Update TODO
2022-11-06 09:07:27 +00:00
rstiskalek
0baa81a4f4
centre coords at 0
2022-11-06 09:06:03 +00:00
rstiskalek
1cd3f10848
add num density
2022-11-06 09:05:51 +00:00
rstiskalek
3979650663
add boxunits transform on array
2022-11-06 06:32:28 +00:00
Richard Stiskalek
7f58b1f78c
JAX and fix conc ( #6 )
...
* change to log10 initlogRs
* add uncertainty
* add check if hessian negative
* update TODO
* update TODO
* output the error too
* save e_logRs
* add concentration calculation
* calcul concentration
* missed comma in a list
* Update TODO
* fix bug
* add box units and pretty status
* make uncertainty optional
* add BIC function
* remove BIC again
* add new overdensity calculation
* change defualt values to max dist and mass
* change to r200
* new halo find
* speed up the calculation
* add commented fucn
* update TODO
* add check whether too close to outside boundary
* Update TODO
* extract velocity as well
* calculate m200 and m500
* update nb
* update TODO
2022-11-05 21:17:05 +00:00
rstiskalek
ee84c12a55
Merge branch 'master' of https://github.com/Richard-Sti/galomatch
2022-11-01 10:11:14 +00:00
Richard Stiskalek
ba98ecc299
Mass enclosed in a sphere calculation ( #5 )
...
* rename nb
* add merge func
* rm bug..
* add static methods
* save rmin, rmax
* add properties for box units
* move radial info to the clump
* add Npart explicit
* move where rmin, rmax obtained
* add box cosmo
* add __getattr__
* add comments in units
* add enclosed spherical mass
* rm unused variables
* add clump mass setter
* add the halo index
* add enclosed overdensity
* add enclosed_overdensity
* simplify loss func
* opt result to nan
* change Rs to log10
* change back to attribs
* add H0 and h props
* add setattrs
* Remove global constants
* move Msuncgs above
* add crit density
* add dots
* add r200c and r500c
* add M200 and M500
* make lowercase
* output r200, r500, m200, m500
* update TODO
* update README
* fit NFW only up to r200
* add r178, m178
* add m178, r178
* update TODO
2022-11-01 10:10:54 +00:00
rstiskalek
865077c3c2
rename nb
2022-10-31 16:47:24 +00:00
rstiskalek
88e2132232
update README
2022-10-30 20:23:35 +00:00
rstiskalek
09ce7b4b5e
Update TODO
2022-10-30 20:21:48 +00:00
Richard Stiskalek
8a56c22813
Within halo work and NFW fit ( #4 )
...
* add listing of snapshots
* change distance to comoving
* ignore cp files
* rename nb
* add str to list
* add NFW profile shapes
* add fits imports
* Rename to Nsnap
* in clumps_read only select props
* make clumpid int
* expand doc
* add import
* edit readme
* distribute halos
* add profile & posterior
* add import
* add import
* add documentation
* add rvs and init guess
* update todo
* update nb
* add file
* return end index too
* change clump_ids format to int32
* skeleton of dump particle
* update nb
* add func to drop 0 clump indxs parts
* add import
* add halo dump
* switch to float32
* Update TODO
* update TODO
* add func that loads a split
* add halo object
* Rename to clump
* make post work with a clump
* add optimiser
* add Nsplits
* ignore submission scripts
* ignore .out
* add dumppath
* add job splitting
* add split halos script
* rename file
* renaem files
* rm file
* rename imports
* edit desc
* add pick clump
* add number of particles
* update TODO
* update todo
* add script
* add dumping
* change dumpdir structure
* change dumpdir
* add import
* Remove tqdm
* Increase the number of splits
* rm shuffle option
* Change to remove split
* add emojis
* fix part counts in splits
* change num of splits
* rm with particle cut
* keep splits
* fit only if 10 part and more
* add min distance
* rm warning about not set vels
* update TODO
* calculate rho0 too
* add results collection
* add import
* add func to combine splits
* update TODO
* add extract cols
* update nb
* update TODO
2022-10-30 20:16:56 +00:00
rstiskalek
85a6a6d58a
comment out correlation import
2022-10-21 20:00:30 +01:00
rstiskalek
ba15264eb8
Add docs
2022-10-21 19:58:59 +01:00
rstiskalek
dd34036219
rename
2022-10-21 17:06:29 +01:00
rstiskalek
cef4ad1ae8
Merge branch 'master' of https://github.com/Richard-Sti/galomatch
2022-10-20 23:37:36 +01:00
rstiskalek
a47847cb7c
more renaming
2022-10-20 23:37:33 +01:00
rstiskalek
a9e98f5a2d
Rename repo
2022-10-20 23:34:14 +01:00
Richard Stiskalek
0a73256fe3
Update README.md
2022-10-20 23:31:19 +01:00
Richard Stiskalek
942c36b142
Box units conversion ( #3 )
...
* linting
* fix long line
* rename nb
* rename import
* add group catalog
* move imports out of functions
* add array_to_structured
* add references
* fix subsampling
* fix coord bug
* add 2M++ dists
* save nb
* fix comment
* add snapshot path
* add snapshot path
* add read_info
* Move transforms
* add import radec
* expand docs
* Move flipcols
* update nb
* add flip_cols
* create file
* add blank line
* Move units transfs
* add blank line
* add units import
* rm imports
* add import
* add box_units
* add comments
2022-10-20 23:28:44 +01:00
rstiskalek
c7665b8136
linting
2022-10-20 08:15:34 +01:00
rstiskalek
26c9946977
comments
2022-10-20 08:13:26 +01:00
