csiborgtools/.gitignore

venv_galomatch/
share/
bin/
.bashrc
*.pyc
*/.ipynb_checkpoints/
plots/*
.vscode/settings.json
csiborgtools/fits/_halo_profile.py
csiborgtools/fits/_filenames.py
csiborgtools/fits/analyse_voids_25.py
scripts/*.out
build/*
.eggs/*
csiborgtools.egg-info/*
Pylians3/*
scripts/plot_correlation.ipynb
scripts/*.sh
venv/
.trunk/*
first commit 2022-10-02 12:12:45 +02:00			`venv_galomatch/`
			`share/`
			`bin/`
			`.bashrc`
ignore *.pyc 2022-10-10 18:41:29 +02:00			`*.pyc`
ignore checkpoints 2022-10-11 14:47:26 +02:00			`*/.ipynb_checkpoints/`
Basic matching (#2) * add recarray manipulations * add cart to radec * add behav so x can be a list * add import * create empty files * ignore plots file * add planck data * add read_mmain file * add cols_to_structured import * use cols_to_structured * add cols_to_structued * add read_mmain import * add reading planck * add mass conversion * add brute force separation calculation * update nb * rename & int dtype * add func to get csiborg ids * add list to nd array conversion * add utils * rename file * add 2M++ * add read 2mpp * add 2mpp shortcut * add randoms generator * Change range of RA [0, 360] * fix ang wrapping * add code for sphere 2pcf * rm wrapping * optionally load only a few borgs * update nb 2022-10-18 20:41:20 +02:00			`plots/*`
ignore settings 2022-10-20 09:13:09 +02:00			`.vscode/settings.json`
Within halo work and NFW fit (#4) * add listing of snapshots * change distance to comoving * ignore cp files * rename nb * add str to list * add NFW profile shapes * add fits imports * Rename to Nsnap * in clumps_read only select props * make clumpid int * expand doc * add import * edit readme * distribute halos * add profile & posterior * add import * add import * add documentation * add rvs and init guess * update todo * update nb * add file * return end index too * change clump_ids format to int32 * skeleton of dump particle * update nb * add func to drop 0 clump indxs parts * add import * add halo dump * switch to float32 * Update TODO * update TODO * add func that loads a split * add halo object * Rename to clump * make post work with a clump * add optimiser * add Nsplits * ignore submission scripts * ignore .out * add dumppath * add job splitting * add split halos script * rename file * renaem files * rm file * rename imports * edit desc * add pick clump * add number of particles * update TODO * update todo * add script * add dumping * change dumpdir structure * change dumpdir * add import * Remove tqdm * Increase the number of splits * rm shuffle option * Change to remove split * add emojis * fix part counts in splits * change num of splits * rm with particle cut * keep splits * fit only if 10 part and more * add min distance * rm warning about not set vels * update TODO * calculate rho0 too * add results collection * add import * add func to combine splits * update TODO * add extract cols * update nb * update TODO 2022-10-30 21:16:56 +01:00			`csiborgtools/fits/_halo_profile.py`
			`csiborgtools/fits/_filenames.py`
			`csiborgtools/fits/analyse_voids_25.py`
			`scripts/*.out`
Particle match & file system & phase space (#11) * Create file system * add doc * add n_sim n_snap directly to paths * Move things to a single particle reader for consistency * add docstring * add srdcir, dumpdir and mmain_path * make boxunits work with paths * switch to using paths * add tempdumpdir * rm dependence on old functions * rm comment * rm unused import * go back to all imports * fix import bug * rm dependence on old functions * modernize code! * fix typo * fix typo * update fits to new data structureing * change docs * add julia repo * add setup * add install commands * ignore install files * add array flattening * update dependene * add positions reader * update manifest and projects * add func * update gitignore * pos matching progress * move file * rm comment * add velocities getter * fix bug * fix name bug * fix path bug * fix args func * add redshift calculation to catalogues * add shortcut to set n_sim and n_snap * if cond bug * add the cosine similarity * add verbosit iterator * add docs * update README * update README * update README 2022-11-25 11:44:08 +01:00			`build/*`
			`.eggs/*`
			`csiborgtools.egg-info/*`
Potential (#13) * add basic density field * Add TODO * add field smoothing * update how pos are calculated * add transforms both ways * add import * add sky density * add make skymap func * update TODO * update gitignore * add potential field calculation * delete boxsize setter * add tidal tensor 2022-11-27 08:53:38 +01:00			`Pylians3/*`
Power spectrum stuff (#16) * add autok1d * update TODO * add basic cross pk * del blank line * fix small bugs * fix loop bug * rm nbs * edit docstring * Update TODO * get rid of verbose flag * take all ICs * attempt better memory * simplify ASCII dump * rm verbose statement to get rid of bugs! * close fortran files * add MAS options * add boxsize setter * Move comment up * paths chagne * Update TODO * Update TODO * Forgotten units in Xpk * Attempt at fixing the distance bug * Update TODO * Update TODO * Remove comment * add summary reader * Update gitignore 2022-12-12 15:42:44 +01:00			`scripts/plot_correlation.ipynb`
kNN-CDF secondary halo bias (#40) * Add seperate autoknn script & config file * edit ics * Edit submission script * Add threshold values * Edit batch sizign * Remove print * edit * Rename files * Rename * Update nb * edit runs * Edit submit * Add median threshold * add new auto reader * editt submit * edit submit * Edit submit * Add mean prk * Edit runs * Remove correlation file * Move split to clutering * Add init * Remove import * Add the file * Add correlation reading * Edit scripts * Add below and above median permutation for cross * Update imports * Move rvs_in_sphere * Create utils * Split * Add import * Add normalised marks * Add import * Edit readme * Clean up submission file * Stop tracking submit files * Update gitignore * Add poisson field analytical expression * Add abstract generators * Add generators * Pass in the generator * Add a check for if there are any files * Start saving average density * Update nb * Update readme * Update units * Edit jobs * Update submits * Update reader * Add random crossing * Update crossing script * Add crossing with random * Update readme * Update notebook 2023-04-09 21:57:05 +02:00			`scripts/*.sh`
Add cleaner paths (#43) * ignore venv * ignore pylians if unavaible * Edit loading paths * Edit paths * Stop having default paths * Add nb * Add glamdring paths --------- Co-authored-by: Richard Stiskalek <dc-stis1@login8b.pri.cosma7.alces.network> Co-authored-by: Richard Stiskalek <dc-stis1@login8a.pri.cosma7.alces.network> 2023-04-15 00:24:52 +02:00			`venv/`
Add mmain and other major updates (#44) * Move paths to a separate file * Add mmain reader * Add a verbosity flag * Fix imports * Fix bug * Rename files * Return ultimate parents * Add script to generate mmain * Remove mmain path * edit path * Add mmain path * Change function name * Rename function * Turn off verbose * Fix list requirement * Edit init match paths * Fix init pathing * Edit paths docs * Edit dumpdir name * Rename path * Fix split paths * Remove unused import * Add comment * Update readme * remove read mmain * Rename haloatalogue * Fix minor bugs * Update nbs * Add create directory option * Move split jobs * Move spliot jobs * Remove splitting * Add import * Edit script * Deeper split folder * Fix paths bug * Rename catalogue * Rename Catalogue * Add new clumpread * Edit paths * add knn paths * Update commenting * Update imports * Add more conversions * Update temp file * Add a note * Add catalogue * Cooment * Update TODO * Update script * add nb * Update * pep8 * edit paths & pep8 * Fix knn auto paths * add paths docs * Add auto and cross knn paths * Add new paths * Simplify tpcf reading * pep8 patch * update readme * Update progress * pep8 * pep8 * pep8 * pep8 * pep8 * pep8 * pep8 * pep8 * pep8 * pep8 * pep8 * pep8 * pep8 * pep8 * pep8 * Pep 8 and restructure * add lambda spin * add clump and halo * add checks * Edit halo profile fit * Update gitignore * backup script 2023-04-18 11:02:36 +02:00			`.trunk/*`