Paul M. Sutter
fc2d7157f4
bug fixes for previous commit
2025-04-21 15:04:23 -04:00
Paul M. Sutter
dadfd8d40a
extra info in void catalog output (void type, max radius, nearest flagged galaxy), added filtering routines on these properties for post-analysis
2025-04-21 15:02:05 -04:00
Paul M. Sutter
f9fc9e8990
cleaned up procedure for checking for 'obviously bad' voids; no longer filters on density contrast since this only affects edge voids anyway
2025-03-25 14:49:41 -04:00
Paul M. Sutter
93d847b158
removed output of partially-trimmed catalogs
2025-03-24 21:00:46 -04:00
Paul M. Sutter
069c148303
temporarily putting mock particles for debugging purposes
2025-03-23 17:58:52 -04:00
Paul M. Sutter
4c6ec4ba82
added voidID property to particles in catalog output
2025-03-22 19:28:14 -04:00
Paul M. Sutter
326756b2bc
+ radial profiles now full actual density from survey volume, not zobov normalization
...
+ getVolNorm provides both zobov normalization and average density from survey volume for observations
+ significant update and cleanup to plotting routines
2025-03-04 14:07:36 -05:00
Paul M. Sutter
b79046ac22
changed voronoi plotting to take void index rather than ID
2025-01-18 21:13:51 +10:00
Paul M. Sutter
ad2d3722cc
Added double-checking of flagged galaxies to ensure survey boundaries are respected. Python components of launchers now add their status to log files. Rearranged some warnings for broken tessellations due to guard point encounters, since it's not always a bad thing.
2025-01-17 21:53:25 +08:00
Paul M. Sutter
5d93a8a737
Tesllation seems stable with new boundary handling procedure. Rooted out strange adjacency record-keeping due to some galaxies connecting to guard particles. Zobov still generates warning about guard particle encounters, but this is fine for observational datasets because we don't trust the tesselation at the edge galaxies anyway.
2025-01-16 18:40:54 +08:00
Paul M. Sutter
091cf5d1dc
First steps in purging the tracking of mock particles: no longer present in jovoz2
2025-01-09 18:21:26 +08:00
Paul M. Sutter
a1d0b675c7
Removed redshift cuts in pruning, since this is now handled automatically with new boundary management scheme
2025-01-09 16:09:49 +08:00
Paul M. Sutter
cf97cfba5d
Continuing development. Boundary handling seems to be stable and working. Now testing void finding.
2025-01-08 15:13:29 +08:00
Paul M. Sutter
3dce2593d9
Implemented (yet another) new boundary handling scheme, whereby we scan radially along survey edge while flagging nearest galaxies. The prepObservation routine was significantly cleaned up to accommodate this, but it was ultimately implemented in python (surveyTools.py) for ease of prototyping, with the intent to move it back into C later.
...
Some general housekeeping, making sure some new parameters are passed around correctly, and removing the storage of some unused files.
This update is considered HIGHLY UNSTABLE. It will almost certainly break somewhere for simulations.
Still under active development.
2025-01-07 20:04:29 +08:00
Paul M. Sutter
62dd66be79
added vornoi plotting routine
2024-06-08 16:18:33 +01:00
Paul M. Sutter
7f3afca2d7
fixed bug in adjacency reading
2024-06-08 14:04:59 +01:00
Paul M. Sutter
ad752f21e8
catalog loading routine now also includes edge flag and particle adjancy info
2024-06-07 22:02:33 +02:00
Paul M. Sutter
1a678eda5d
weighted volumes propagated to catalog loading routine
2024-06-07 12:18:44 +02:00
Paul M. Sutter
78678881af
weighted volumes now propagate to pruning step
2024-06-07 12:17:17 +02:00
Paul M. Sutter
7e5a51d931
redshift boundary tolerance is now user-selectable
2024-06-07 11:58:36 +02:00
Paul M. Sutter
c0a69c4536
testing done on self-created masks, now reverting example to provided mask
2024-06-06 20:33:09 +02:00
Paul M. Sutter
a45eca0b6e
carried boundary flags all the way through to pruning; cleaned up pruning routines
2024-06-06 20:26:47 +02:00
Paul M. Sutter
dd181da42a
bug fixed related to different boundary handling procedure. no guarantee that it's correct (yet) but it runs
2024-06-06 00:49:53 +02:00
Paul M. Sutter
03c8f773b6
rename helper function from angularDiameter to comovingDistance since that's what it actually is
2024-06-05 23:16:21 +02:00
Paul M. Sutter
f59fee9bf8
- fixed bug where omegaM was always 0.3 regardless of user input
...
- wrote out flagging of boundary and edge galaxies
- turned off placing of boundary particles
2024-06-05 17:28:16 +02:00
Paul M. Sutter
aded7a7c2c
setting the stage for on-the-fly mask and edge calculation
2024-06-05 01:06:36 +02:00
Paul M. Sutter
99a441013d
renamed tolerance parameter to better reflect its function
2024-06-04 15:46:23 +02:00
Paul M. Sutter
4f78bb445b
allowed high-z threshold for cutting to be user-selectable
2024-06-04 13:28:54 +02:00
Paul M. Sutter
ddcb971eae
placed mergingThreshold parameter in defaults file
2024-06-04 11:19:07 +02:00
Paul M. Sutter
d48d740b78
fixed some dependency calls with new layout
2024-06-04 08:57:09 +02:00
Paul M. Sutter
438407be74
cleaned up vide toolkit calls
2024-05-22 19:38:20 -04:00
Paul M. Sutter
288e2263b6
slightly rearranged vide pipeline files to reduce clutter
2024-05-22 19:05:04 -04:00
Paul M. Sutter
d7c0fbc720
renamed void_pipeline to vide_pipeline
2024-05-22 18:51:20 -04:00
Paul M. Sutter
4d9c5ab2c1
renamed src to source
2024-05-22 16:15:14 -04:00
Paul M. Sutter
4dcaf3959b
renamed python_tools to python_src to maintain consistency
2024-05-22 16:07:24 -04:00
Paul M. Sutter
0f4bc75527
renamed libzobov to util as it contains general-purpose routines for handling voids and particles
2024-05-22 16:05:36 -04:00
Paul M. Sutter
3203c24ec5
renamed c_tools to c_src and moved zobov to that directory
2024-05-22 15:54:36 -04:00
Paul M. Sutter
50ad2d6d73
renamed 'generateMock' routines to 'prep' routines to accurately reflect what they do
2024-05-22 15:46:04 -04:00
Paul M. Sutter
b1962100a8
re-added some essential routines; updated example sceipts to reflect new layout
2024-05-22 15:13:55 -04:00
Paul M. Sutter
541223fd07
re-added some essential routines; updated example sceipts to reflect new layout
2024-05-22 15:13:15 -04:00
Paul M. Sutter
45f22a2c29
renamed stacking to pruning as that's what it does
2024-05-22 12:56:33 -04:00
Paul M. Sutter
faca2d1ea2
removed unused A-P test code
2024-05-17 17:18:33 -04:00
Paul M. Sutter
b7832bc0d7
removed unused HOD and 2-pt correlation code
2024-05-17 17:16:07 -04:00
Paul M. Sutter
38a8a1926e
removed unused void overlap functions
2024-05-17 17:15:09 -04:00
Paul M. Sutter
cef05720a1
moved example datasets and config files to their own directory
2024-05-17 17:10:24 -04:00
Paul M. Sutter
2d2c52ac8c
removed unused code in c_tools: hod and zobov2
2024-05-17 16:33:30 -04:00
b78ff2bd52
Add missing seeding of CONFIGURE_LD_FLAGS by LDFLAGS
2024-04-22 16:43:57 +02:00
Paul M. Sutter
16301287de
fixed bug where eigenvectors were printed in transposed order
2024-03-26 22:13:59 -04:00
9794bb1973
Add missing sanity check
2023-12-06 09:16:18 +01:00
dac59fabeb
Really exit in case of memory failure
2023-12-06 08:11:16 +01:00
