274 commits

Author	SHA1	Message	Date
P.M. Sutter	fd2c5742b2	Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification	2013-06-29 05:27:06 -05:00
P.M. Sutter	0baf14fc48	voidoverlap now matched top-level -> any-level	2013-06-29 05:25:59 -05:00
P.M. Sutter	9700f0d495	prepration script now pays attention to halo/subhalo distinction, and only takes halos	2013-06-29 05:20:15 -05:00
P.M. Sutter	4c97bcb798	halos and hod now only take parent halos	2013-06-19 06:47:56 -05:00
Guilhem Lavaux	789e871a13	Updated launchers to follow the new location of jozov2	2013-06-11 11:58:29 +02:00
P.M. Sutter	9786812b2c	better separation of plotting colors	2013-06-02 20:50:18 -05:00
P.M. Sutter	ef5384c54b	prep script now estimates number of halos to get correct minimum threshold void size	2013-06-02 20:47:10 -05:00
P.M. Sutter	3e25f0c276	added dataset name which will be appended to sample nicknames; added descriptive nicknames to masked samples	2013-05-25 02:09:11 -05:00
P.M. Sutter	30655fedaf	fixed some bugs in halo handling	2013-05-07 13:43:45 -05:00
P.M. Sutter	195f19806a	halo files now have regularized names	2013-05-07 03:56:38 -05:00
P.M. Sutter	ae7b69f3ca	joggling in generateMock now disabled by default	2013-05-07 03:40:58 -05:00
P.M. Sutter	9a2588ddf6	Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification	2013-05-06 03:47:50 -05:00
P.M. Sutter	7a602ee8c4	updates to launchers	2013-05-06 03:47:42 -05:00
P.M. Sutter	1980fdd5d1	added joggling of input particles	2013-05-03 14:44:40 -04:00
P.M. Sutter	8be96d88f9	updated script defaults	2013-04-29 21:46:19 -05:00
P.M. Sutter	9c26996591	passing ellipticity file to voidOverlap	2013-04-28 14:20:19 -05:00
P.M. Sutter	0cc5529b08	checking for periodicity now pushed to function	2013-04-25 18:13:24 -05:00
P.M. Sutter	c088a87809	allow multiple stacks/slices for AP analysis within a redshift bin	2013-04-25 11:05:12 -05:00
P.M. Sutter	c81fd8913b	now outputs mass into particle and halo files	2013-04-25 09:35:32 -05:00
P.M. Sutter	7c6463ff8d	whoops, typed the variable name wrong	2013-04-23 07:42:23 -05:00
P.M. Sutter	76197f1196	prepareCatalogs now checks to see if subsampling is desired before actually subsampling...	2013-04-23 07:40:15 -05:00
P.M. Sutter	f17e2dbdc8	plotting now defaults to the untrimmed catalog	2013-04-11 09:53:36 -05:00
P.M. Sutter	dbc4c87c3e	removed a few extraneous checks in launchers	2013-04-11 09:53:01 -05:00
P.M. Sutter	765b39ac63	more informative pipeline defaults.py file to describe how to handle particle files; option to do relative or absolute subsampling	2013-04-11 09:50:04 -05:00
P.M. Sutter	2c2426f662	prepareCatalogs now first loads a parameter file full of defaults	2013-04-06 21:39:08 -05:00
P.M. Sutter	3b7b1dd4d2	void overlap analysis now uses untrimmed catalog by default	2013-04-01 13:04:40 -05:00
P.M. Sutter	2e832dd415	void overlap now gets barycenters from center_ file rather than barycenter_ file	2013-03-31 22:04:27 -05:00
P.M. Sutter	151c605335	pruneVoids now cleans out non-leaf voids; adjusted stackVoidsZero launcher to accept custom stacks	2013-03-30 15:24:45 -05:00
P.M. Sutter	94a4261bb9	switched to shorter 'parm' argument, more informative naming of subsamples	2013-03-28 21:31:16 -05:00
P.M. Sutter	afb562d419	once again, fixed bug in periodic boundary detection...	2013-03-24 16:06:01 -05:00
P.M. Sutter	8043742123	added script to compare stacks and radial profiles of matched voids	2013-03-23 11:50:17 -05:00
P.M. Sutter	f699ed372f	added nico's cross-correlation script to a new directory, analysis/	2013-03-22 11:46:20 -05:00
P.M. Sutter	02f756e8a5	integrated nico's cross-correlation backend and enabled plotting of the void distribution	2013-03-22 08:51:45 -05:00
P.M. Sutter	60965e1fa4	multiple levels of subsampling now correctly handled	2013-03-21 21:54:56 -05:00
P.M. Sutter	b1dc0abc0c	can now do sdf subsampling (optionally) within prepareCatalogs	2013-03-21 21:51:29 -05:00
P.M. Sutter	25a6ead259	can now do subsampling of sdf in prepareCatalogs	2013-03-20 07:21:02 -05:00
P.M. Sutter	7c172d5642	Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification	2013-03-20 07:19:34 -05:00
P.M. Sutter	7c16c9477f	more correct handling of multiple subsample levels	2013-03-20 07:19:25 -05:00
Guilhem Lavaux	444cd8dad4	Added explanatory exception instead of a cryptic error for sample.dataFormat	2013-03-19 20:35:42 +01:00
P.M. Sutter	84fc94f471	HOD appears to work now with SDF format	2013-03-05 13:25:19 -06:00
P.M. Sutter	de9263b1d8	halo catalog prep appear to work with SDF format	2013-03-05 12:30:00 -06:00
P.M. Sutter	f7b4e5076b	restarting with multiple subsampling appears to work	2013-03-04 10:44:00 -06:00
P.M. Sutter	db6e80a343	Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification	2013-03-03 21:00:47 -06:00
P.M. Sutter	29cb7a5a45	committing misc local edits before mergering with GPL'd versions	2013-03-03 21:00:37 -06:00
P.M. Sutter	af4f6cf41e	fixed bug where netcdf files weren't properly closed	2013-03-02 21:51:05 -06:00
Guilhem Lavaux	5d9dad1439	Updated Copyright/License	2013-03-02 20:23:33 -05:00
Guilhem Lavaux	bce9ac1dd3	Removed the possibility of a later version. The patent mess is unclear.	2013-03-02 18:33:33 -05:00
Guilhem Lavaux	aa38661b65	Added copyright/license notice	2013-03-02 18:30:40 -05:00
Guilhem Lavaux	e9194f5c55	Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification	2013-03-02 10:45:10 -06:00
Guilhem Lavaux	51c409a170	Maybe incorrect maxCentralDensity ?	2013-03-02 10:45:08 -06:00