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Guilhem Lavaux 2013-03-02 18:30:40 -05:00
parent edd9c2a45d
commit aa38661b65
45 changed files with 877 additions and 0 deletions
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19
python_tools/pipeline_source/prepareCatalogs.in.py Executable file → Normal file
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#+
# VIDE -- Void IDEntification pipeline -- ./python_tools/pipeline_source/prepareCatalogs.in.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 Paul M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
#!/usr/bin/env python
# prepares input catalogs based on multidark simulations

19
python_tools/setup.py
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#+
# VIDE -- Void IDEntification pipeline -- ./python_tools/setup.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 Paul M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
from distutils.core import setup
from distutils.extension import Extension
from Cython.Distutils import build_ext

19
python_tools/void_python_tools/__init__.py
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#+
# VIDE -- Void IDEntification pipeline -- ./python_tools/void_python_tools/__init__.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 Paul M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
from void_python_tools.backend import *
from void_python_tools.apTools import *
from void_python_tools.plotting import *

19
python_tools/void_python_tools/apTools/__init__.py
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#+
# VIDE -- Void IDEntification pipeline -- ./python_tools/void_python_tools/apTools/__init__.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 Paul M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
from chi2 import *
from profiles import *

19
python_tools/void_python_tools/apTools/chi2/__init__.py
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#+
# VIDE -- Void IDEntification pipeline -- ./python_tools/void_python_tools/apTools/chi2/__init__.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 Paul M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
from velocityProfileFitNative import *
from likelihood import *
from cosmologyTools import *

19
python_tools/void_python_tools/apTools/chi2/cosmologyTools.py
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#+
# VIDE -- Void IDEntification pipeline -- ./python_tools/void_python_tools/apTools/chi2/cosmologyTools.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 Paul M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
# a suite of functions to compute expansion rates, angular diameter
# distances, and expected void stretching

19
python_tools/void_python_tools/apTools/profiles/__init__.py
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@ -1,3 +1,22 @@
#+
# VIDE -- Void IDEntification pipeline -- ./python_tools/void_python_tools/apTools/profiles/__init__.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 Paul M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
from build import *
from draw import *
from fit import *

19
python_tools/void_python_tools/apTools/profiles/getSurveyProps.py
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#+
# VIDE -- Void IDEntification pipeline -- ./python_tools/void_python_tools/apTools/profiles/getSurveyProps.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 Paul M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
import numpy as np
import healpy as healpy
import scipy.integrate

19
python_tools/void_python_tools/backend/__init__.py
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#+
# VIDE -- Void IDEntification pipeline -- ./python_tools/void_python_tools/backend/__init__.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 Paul M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
from classes import *
from launchers import *
from catalogPrep import *

19
python_tools/void_python_tools/backend/classes.py Executable file → Normal file
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#+
# VIDE -- Void IDEntification pipeline -- ./python_tools/void_python_tools/backend/classes.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 Paul M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
# classes and routines used to support scripts
import os

19
python_tools/void_python_tools/backend/launchers.py Executable file → Normal file
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#+
# VIDE -- Void IDEntification pipeline -- ./python_tools/void_python_tools/backend/launchers.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 Paul M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
# -----------------------------------------------------------------------------
# -----------------------------------------------------------------------------
# routines which communicate with individual data analysis portions -

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python_tools/void_python_tools/plotting/__init__.py
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#+
# VIDE -- Void IDEntification pipeline -- ./python_tools/void_python_tools/plotting/__init__.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 Paul M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
from plotTools import *
from plotDefs import *

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python_tools/void_python_tools/plotting/plotDefs.py
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#+
# VIDE -- Void IDEntification pipeline -- ./python_tools/void_python_tools/plotting/plotDefs.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 Paul M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
LIGHT_SPEED = 299792.458
colorList = ['r', 'b', 'g', 'y', 'c', 'm',

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python_tools/void_python_tools/plotting/plotTools.py
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#+
# VIDE -- Void IDEntification pipeline -- ./python_tools/void_python_tools/plotting/plotTools.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 Paul M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
__all__=['plotRedshiftDistribution', 'plotSizeDistribution', 'plot1dProfiles',
'plotMarg1d', 'plotNumberDistribution']