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84 commits

Author SHA1 Message Date
Guilhem Lavaux
affb56ff48 Merged in python3 (pull request #5) 
Port to python3, large code cleanup

* Fixed command line for cosmotool

* Fix path

* Dump command line is log file

* Fix important typo

* Modify paths for example

* Fix path again

* Use an explicit constructor

* Change file to open (python 2->3)

* python3 fix for xrange in periodic_kdtree.py

* Fixed index for Np, numPart, numZones, numZonesTot, partID, zoneID in catalogUtil.py
 2020-12-29 08:56:33 +00:00
Guilhem Lavaux
63c7757662 Fix path 2018-07-19 15:24:57 +03:00
P.M. Sutter
6620dd8fd7 changed default subsampling behavior 2014-12-02 09:24:22 -05:00
P.M. Sutter
5ac3586683 remove autostacking 2014-06-03 13:53:09 -04:00
P.M. Sutter
5022567fa1 updated defaults 2014-06-03 00:33:22 -04:00
P.M. Sutter
455fcdb9d8 cleaned out AP from prepareInputs 2014-06-02 10:22:21 -04:00
P.M. Sutter
d306b44f44 Merge branch 'master' of https://bitbucket.org/cosmicvoids/vide_public 2014-06-02 09:50:36 -04:00
P.M. Sutter
05faeafd02 removed AP stages 2014-06-02 09:50:24 -04:00
P.M. Sutter
67700aa659 fixed license 2014-06-01 20:03:08 -05:00
P.M. Sutter
466dfd8576 fixed bug in shifting z-axis 2014-05-29 15:41:37 -05:00
P.M. Sutter
8e13e317da default to not do subsampling in prep 2014-05-29 14:27:18 -05:00
P.M. Sutter
88dfc4209b fixed naming issue with unshifted boxes 2014-05-29 14:26:01 -05:00
P.M. Sutter
53398d978c fix name change 2014-05-29 08:21:51 -04:00
P.M. Sutter
47f6f88d1e changed doSubSampling variable name; made shifting of z-coord with redshift optional 2014-05-28 18:43:43 -04:00
P.M. Sutter
ec7d983519 removed stackInfo in prepareInputs 2014-05-09 23:52:25 -04:00
P.M. Sutter
1d728c2cc8 name change for preparation script 2014-05-07 21:18:34 -05:00
P.M. Sutter
1380ae2caf removed AP stacking in preparation script 2014-05-07 13:30:16 -05:00
Guilhem Lavaux
29723fff06 updated copyright notice 2014-04-28 08:52:27 +02:00
P.M. Sutter
73c6aedfc2 much more flexible for handling different stacking and AP approaches 2014-03-11 12:49:02 -05:00
P.M. Sutter
3f5a767b48 significant improvements and streamlining of a-p analysis 2014-02-23 18:20:56 -06:00
P.M. Sutter
e5cc6297fa consistent handling of comoving coords in sims 2014-02-12 04:52:58 -06:00
P.M. Sutter
59a94ffed8 setup for DR10 2014-02-11 12:27:32 -06:00
P.M. Sutter
5ab0a34129 estimate halo density taken from highest redshiftfor universal minVoidRadius 2014-02-10 03:23:41 -06:00
P.M. Sutter
a9e040540b fixed bug in handling subhalos 2014-02-09 06:11:06 -06:00
Paul Matthew Sutter
8dbf8f8b54 fixed bug when loading halos 2014-02-03 15:48:15 +01:00
P.M. Sutter
b19fbca2ad improved handling of SDF files 2014-02-03 04:40:50 -06:00
P.M. Sutter
f91b565d6f fixed some bugs in density handling; now more flexible approach to SDF files 2014-01-23 21:05:07 -06:00
P.M. Sutter
4d853bbe09 added density thresholding for halos and galaxies in preparation scripts 2014-01-23 17:04:46 -06:00
Paul Matthew Sutter
65cfa8a073 cleaner handling of HOD errors 2014-01-14 11:36:19 +01:00
P.M. Sutter
a513603957 unique filenames for HOD output so scripts can be run in parallel 2014-01-10 10:33:08 -06:00
P.M. Sutter
385c0e65aa more generic subprocess calling in preparation scripts 2014-01-09 15:05:31 -06:00
P.M. Sutter
3a4b636043 HOD code now callable from prepareCatalogs script 2013-12-31 08:20:56 -06:00
P.M. Sutter
f268820a2e switched variable name useLCDM to less confusing useComoving; make it sample-level rather than dataset-level 2013-12-19 12:38:05 -06:00
P.M. Sutter
842c2beaaa changed name in headers 2013-12-01 20:59:00 -06:00
P.M. Sutter
fa0d46c55a moved all of sample_info printing to launchGenerate 2013-11-30 22:19:58 -06:00
P.M. Sutter
cde70952c4 added logarithmic binning for profiles 2013-11-18 08:00:19 -06:00
P.M. Sutter
0fb3a39b1c fixed wrongly-placed closefile 2013-10-08 20:57:58 -05:00
P.M. Sutter
cd2bef15b3 stackVoidsZero now (partially) understands periodic boundaries 2013-07-12 03:15:13 -05:00
P.M. Sutter
9700f0d495 prepration script now pays attention to halo/subhalo distinction, and only takes halos 2013-06-29 05:20:15 -05:00
P.M. Sutter
4c97bcb798 halos and hod now only take parent halos 2013-06-19 06:47:56 -05:00
P.M. Sutter
ef5384c54b prep script now estimates number of halos to get correct minimum threshold void size 2013-06-02 20:47:10 -05:00
P.M. Sutter
3e25f0c276 added dataset name which will be appended to sample nicknames; added descriptive nicknames to masked samples 2013-05-25 02:09:11 -05:00
P.M. Sutter
30655fedaf fixed some bugs in halo handling 2013-05-07 13:43:45 -05:00
P.M. Sutter
195f19806a halo files now have regularized names 2013-05-07 03:56:38 -05:00
P.M. Sutter
8be96d88f9 updated script defaults 2013-04-29 21:46:19 -05:00
P.M. Sutter
c088a87809 allow multiple stacks/slices for AP analysis within a redshift bin 2013-04-25 11:05:12 -05:00
P.M. Sutter
c81fd8913b now outputs mass into particle and halo files 2013-04-25 09:35:32 -05:00
P.M. Sutter
7c6463ff8d whoops, typed the variable name wrong 2013-04-23 07:42:23 -05:00
P.M. Sutter
76197f1196 prepareCatalogs now checks to see if subsampling is desired before actually subsampling... 2013-04-23 07:40:15 -05:00
P.M. Sutter
765b39ac63 more informative pipeline defaults.py file to describe how to handle particle files; option to do relative or absolute subsampling 2013-04-11 09:50:04 -05:00