updated copyright notice

This commit is contained in:
Guilhem Lavaux 2014-04-28 08:52:27 +02:00
parent 4494fcdd2f
commit 29723fff06
70 changed files with 573 additions and 110 deletions

2
README
View file

@ -12,7 +12,7 @@ This is VIDE, the Void IDentification and Examination pipeline.
License/Copyright information
-----------------------------
Copyright (C) 2010-2013 Guilhem Lavaux, 2011-2013 P.M. Sutter.
Copyright (C) 2010-2014 Guilhem Lavaux, 2011-2014 P.M. Sutter.
This software is put under the GNU Public License. Please see LICENSE
for further information.

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@ -1,7 +1,7 @@
#+
# VIDE -- Void IDentification and Examination -- ./crossCompare/analysis/datasetsToAnalyze.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 P. M. Sutter
# VIDE -- Void IDentification and Examination -- ./analysis/datasetsToAnalyze.py
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by

19
analysis/xcor.py Executable file → Normal file
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@ -1,3 +1,22 @@
#+
# VIDE -- Void IDentification and Examination -- ./analysis/xcor.py
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; version 2 of the License.
#
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
#!/usr/bin/env python
#+
# VIDE -- Void IDentification and Examination -- ./crossCompare/analysis/mergerTree.py

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@ -1,7 +1,7 @@
#+
# VIDE -- Void IDentification and Examination -- ./build_tools/gather_sources.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 P. M. Sutter
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
@ -41,8 +41,8 @@ def apply_license(license, relimit, filename):
def apply_python_license(filename):
license="""#+
# VIDE -- Void IDentification and Examination -- @FILENAME@
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 P. M. Sutter
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
@ -68,8 +68,8 @@ def apply_python_license(filename):
def apply_cpp_license(filename):
license="""/*+
VIDE -- Void IDentification and Examination -- @FILENAME@
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
@ -85,13 +85,14 @@ def apply_cpp_license(filename):
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
"""
relimit = r'^(?s)/\*\+.*\+\*/'
relimit = r'^(?s)/\*\+.*\+\*/\n'
print("C++ file: %s" % filename)
apply_license(license, relimit, filename)
def analyze_tree(prefix, t):
for ename,entry in t.items():
for entry in t:
ename = entry.name
if ename == 'external' or ename == 'zobov':
continue
if type(entry) == Tree:

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@ -1,7 +1,7 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/analysis/voidOverlap.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by

View file

@ -1,3 +1,21 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/hod/complex.h
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
/* CAUTION: This is the ANSI C (only) version of the Numerical Recipes
utility file complex.h. Do not confuse this file with the same-named
file complex.h that is supplied in the 'misc' subdirectory.

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@ -1,3 +1,21 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/hod/header.h
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#include "nrutil.h"
#include "stdlib.h"
#include "stdio.h"

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@ -1,3 +1,21 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/hod/nrutil.h
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
/* CAUTION: This is the ANSI C (only) version of the Numerical Recipes
utility file nrutil.h. Do not confuse this file with the same-named
file nrutil.h that is supplied in the 'misc' subdirectory.

View file

@ -1,7 +1,7 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/libzobov/contour_pixels.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/libzobov/contour_pixels.hpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
VIDE -- Void IDentification and Examination -- ./c_tools/libzobov/contour_pixels.hpp
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/libzobov/gslIntegrate.hpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
VIDE -- Void IDentification and Examination -- ./c_tools/libzobov/gslIntegrate.hpp
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/libzobov/loadZobov.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/libzobov/loadZobov.hpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
VIDE -- Void IDentification and Examination -- ./c_tools/libzobov/loadZobov.hpp
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/libzobov/particleInfo.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/libzobov/particleInfo.hpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
VIDE -- Void IDentification and Examination -- ./c_tools/libzobov/particleInfo.hpp
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/libzobov/voidTree.hpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
VIDE -- Void IDentification and Examination -- ./c_tools/libzobov/voidTree.hpp
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/mock/generateFromCatalog.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/mock/generateMock.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/mock/generateTestMock.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/mock/loaders/basic_loader.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/mock/loaders/flash_loader.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/mock/loaders/gadget_loader.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/mock/loaders/multidark_loader.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/mock/loaders/ramses_loader.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/mock/loaders/sdf_loader.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/mock/loaders/sdfloader_internal.hpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
VIDE -- Void IDentification and Examination -- ./c_tools/mock/loaders/sdfloader_internal.hpp
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/mock/loaders/simulation_loader.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
/*+
VIDE -- Void IDEntification pipeline -- ./c_tools/mock/loaders/simulation_loader.hpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
VIDE -- Void IDentification and Examination -- ./c_tools/mock/loaders/simulation_loader.hpp
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/stacking/pruneVoids.cpp
Copyright (C) 2010-2013 Guilhem Lavaux
Copyright (C) 2011-2013 P. M. Sutter
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by

View file

@ -1,3 +1,21 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/zobov2/jozov2/jozov2.cpp
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#include <boost/format.hpp>
#include <exception>
#include <iostream>

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@ -1,3 +1,21 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/zobov2/jozov2/jozov2.hpp
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#ifndef __JOZOV2_HPP
#define __JOZOV2_HPP

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@ -1,3 +1,21 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/zobov2/jozov2/jozov2_io.cpp
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#include <iostream>
#include <fstream>
#include <string>

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@ -1,3 +1,21 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/zobov2/jozov2/jozov2_watershed.cpp
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#ifdef OPENMP
#include <omp.h>
#endif

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@ -1,3 +1,21 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/zobov2/jozov2/jozov2_zones.cpp
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#include <iostream>
#include <fstream>
#include "jozov2.hpp"

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@ -1,3 +1,21 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/zobov2/jozov2/zobov.hpp
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#ifndef __ZOBOV_HPP
#define __ZOBOV_HPP

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@ -1,3 +1,21 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/zobov2/voz1b1/voz.h
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#ifndef __VOZ_H
#define __VOZ_H

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@ -1,3 +1,21 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/zobov2/voz1b1/voz1b1.cpp
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#include <cassert>
#include <boost/format.hpp>
#include <iostream>

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@ -1,3 +1,21 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/zobov2/voz1b1/voz_io.cpp
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#include <limits>
#include <iostream>
#include <fstream>

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@ -1,3 +1,21 @@
/*+
VIDE -- Void IDentification and Examination -- ./c_tools/zobov2/voz1b1/voz_io.hpp
Copyright (C) 2010-2014 Guilhem Lavaux
Copyright (C) 2011-2014 P. M. Sutter
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+*/
#ifndef __VOZ_IO_HPP
#define __VOZ_IO_HPP

19
crossCompare/analysis/makeCocenterProfiles.py Executable file → Normal file
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@ -1,3 +1,22 @@
#+
# VIDE -- Void IDentification and Examination -- ./crossCompare/analysis/makeCocenterProfiles.py
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; version 2 of the License.
#
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
#!/usr/bin/env python
#+
# VIDE -- Void IDentification and Examination -- ./pipeline/apAnalysis.py

19
crossCompare/analysis/overlapVoids.py Executable file → Normal file
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@ -1,3 +1,22 @@
#+
# VIDE -- Void IDentification and Examination -- ./crossCompare/analysis/overlapVoids.py
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; version 2 of the License.
#
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
#!/usr/bin/env python
#+
# VIDE -- Void IDentification and Examination -- ./crossCompare/analysis/mergerTree.py

19
crossCompare/parm/sampleParm.py Executable file → Normal file
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@ -1,3 +1,22 @@
#+
# VIDE -- Void IDentification and Examination -- ./crossCompare/parm/sampleParm.py
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; version 2 of the License.
#
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
#!/usr/bin/env python

View file

@ -1,7 +1,7 @@
#+
# VIDE -- Void IDEntification pipeline -- ./crossCompare/plotting/datasetsToPlot.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 P. M. Sutter
# VIDE -- Void IDentification and Examination -- ./crossCompare/plotting/datasetsToPlot.py
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by

19
crossCompare/plotting/plotCocenterProfiles.py Executable file → Normal file
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@ -1,3 +1,22 @@
#+
# VIDE -- Void IDentification and Examination -- ./crossCompare/plotting/plotCocenterProfiles.py
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; version 2 of the License.
#
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
#!/usr/bin/env python
#+
# VIDE -- Void IDentification and Examination -- ./pipeline/apAnalysis.py

19
crossCompare/plotting/plotDenMaps.py Executable file → Normal file
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@ -1,3 +1,22 @@
#+
# VIDE -- Void IDentification and Examination -- ./crossCompare/plotting/plotDenMaps.py
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; version 2 of the License.
#
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
#!/usr/bin/env python
#+
# VIDE -- Void IDentification and Examination -- ./pipeline/apAnalysis.py

19
crossCompare/plotting/plotMatchEllipRatio.py Executable file → Normal file
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@ -1,3 +1,22 @@
#+
# VIDE -- Void IDentification and Examination -- ./crossCompare/plotting/plotMatchEllipRatio.py
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; version 2 of the License.
#
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
#!/usr/bin/env python
# plots cumulative distributions of number counts

19
crossCompare/plotting/plotMatchSizeRatio.py Executable file → Normal file
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@ -1,3 +1,22 @@
#+
# VIDE -- Void IDentification and Examination -- ./crossCompare/plotting/plotMatchSizeRatio.py
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; version 2 of the License.
#
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
#!/usr/bin/env python
# plots cumulative distributions of number counts

19
crossCompare/plotting/plotNumberFunc.py Executable file → Normal file
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@ -1,3 +1,22 @@
#+
# VIDE -- Void IDentification and Examination -- ./crossCompare/plotting/plotNumberFunc.py
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; version 2 of the License.
#
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
#!/usr/bin/env python
# plots cumulative distributions of number counts

View file

@ -1,7 +1,7 @@
#+
# VIDE -- Void IDentification and Examination -- ./pipeline/sdss/sdss_dr7LCDM.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 P. M. Sutter
# VIDE -- Void IDentification and Examination -- ./pipeline/datasets/example_observation.py
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
#+
# VIDE -- Void IDEntification pipeline -- ./pipeline/datasets/mergertree.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 P. M. Sutter
# VIDE -- Void IDentification and Examination -- ./pipeline/datasets/example_simulation.py
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by

19
pipeline/generateCatalog.py Executable file → Normal file
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@ -1,3 +1,22 @@
#+
# VIDE -- Void IDentification and Examination -- ./pipeline/generateCatalog.py
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; version 2 of the License.
#
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
#!/usr/bin/env python
#+
# VIDE -- Void IDentification and Examination -- ./pipeline/generateCatalog.py

View file

@ -1,7 +1,7 @@
#+
# VIDE -- Void IDentification and Examination -- ./pipeline/datasets/mergertree.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 P. M. Sutter
# VIDE -- Void IDentification and Examination -- ./python_tools/pipeline_source/defaults.py
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by

View file

@ -1,3 +1,22 @@
#+
# VIDE -- Void IDentification and Examination -- ./python_tools/pipeline_source/prepareCatalogs.in.py
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; version 2 of the License.
#
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
#!/usr/bin/env python
#+
# VIDE -- Void IDentification and Examination -- ./python_tools/pipeline_source/prepareCatalogs.in.py

View file

@ -1,7 +1,7 @@
#+
# VIDE -- Void IDentification and Examination -- ./python_tools/setup.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 P. M. Sutter
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
#+
# VIDE -- Void IDentification and Examination -- ./python_tools/void_python_tools/__init__.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 P. M. Sutter
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
#+
# VIDE -- Void IDentification and Examination -- ./python_tools/void_python_tools/apTools/__init__.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 P. M. Sutter
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
#+
# VIDE -- Void IDentification and Examination -- ./python_tools/void_python_tools/apTools/chi2/__init__.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 P. M. Sutter
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
#+
# VIDE -- Void IDentification and Examination -- ./python_tools/void_python_tools/apTools/chi2/cosmologyTools.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 P. M. Sutter
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
#+
# VIDE -- Void IDentification and Examination -- ./python_tools/void_python_tools/apTools/profiles/__init__.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 P. M. Sutter
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
#+
# VIDE -- Void IDentification and Examination -- ./python_tools/void_python_tools/apTools/profiles/getSurveyProps.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 P. M. Sutter
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
#+
# VIDE -- Void IDentification and Examination -- ./python_tools/void_python_tools/backend/__init__.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 P. M. Sutter
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
#+
# VIDE -- Void IDentification and Examination -- ./python_tools/void_python_tools/backend/classes.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 P. M. Sutter
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
#+
# VIDE -- Void IDentification and Examination -- ./python_tools/void_python_tools/backend/launchers.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 P. M. Sutter
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
#+
# VIDE -- Void IDentification and Examination -- ./python_tools/void_python_tools/plotting/__init__.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 P. M. Sutter
# VIDE -- Void IDentification and Examination -- ./python_tools/void_python_tools/partUtil/__init__.py
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
#+
# VIDE -- Void IDentification and Examination -- ./python_tools/void_python_tools/plotting/__init__.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 P. M. Sutter
# VIDE -- Void IDentification and Examination -- ./python_tools/void_python_tools/partUtil/partUtil.py
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
#+
# VIDE -- Void IDentification and Examination -- ./python_tools/void_python_tools/plotting/__init__.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 P. M. Sutter
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
#+
# VIDE -- Void IDentification and Examination -- ./python_tools/void_python_tools/plotting/plotDefs.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 P. M. Sutter
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
#+
# VIDE -- Void IDentification and Examination -- ./python_tools/void_python_tools/plotting/plotTools.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 P. M. Sutter
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by

View file

@ -1,7 +1,7 @@
#+
# VIDE -- Void IDentification and Examination -- ./python_tools/void_python_tools/plotting/__init__.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 P. M. Sutter
# VIDE -- Void IDentification and Examination -- ./python_tools/void_python_tools/xcor/__init__.py
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by

View file

@ -1,3 +1,22 @@
#+
# VIDE -- Void IDentification and Examination -- ./python_tools/void_python_tools/xcor/xcorlib.py
# Copyright (C) 2010-2014 Guilhem Lavaux
# Copyright (C) 2011-2014 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; version 2 of the License.
#
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
import numpy as np
def cic( x, Lbox, Lboxcut = 0, Nmesh = 128, weights = None ):