207 commits

Author	SHA1	Message	Date
P.M. Sutter	e78f26a228	voidOverlap now reports accurate count of progenitors	2013-05-08 03:41:38 -05:00
P.M. Sutter	cc84c840db	more details in pruneVoids shape output	2013-05-08 03:33:31 -05:00
P.M. Sutter	726ad2d01e	added rng allocation for joggling	2013-05-06 09:41:55 -05:00
P.M. Sutter	ab13d013e0	fixed bugs to particle joggling	2013-05-06 03:50:47 -05:00
P.M. Sutter	9a2588ddf6	Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification	2013-05-06 03:47:50 -05:00
P.M. Sutter	1980fdd5d1	added joggling of input particles	2013-05-03 14:44:40 -04:00
P.M. Sutter	98fdc38afa	added an underscore to output filename	2013-04-30 09:05:14 -05:00
P.M. Sutter	92585f56b8	many bug fixes and improvements to voidoverlap	2013-04-29 21:32:06 -05:00
P.M. Sutter	0515431958	clean up of prunevoids; outputs more variations of trimmed and cut catalogs	2013-04-29 21:31:47 -05:00
P.M. Sutter	01c5940293	bug fixes in voidOverlap, also now report ellipticities	2013-04-28 14:19:51 -05:00
P.M. Sutter	c81fd8913b	now outputs mass into particle and halo files	2013-04-25 09:35:32 -05:00
Guilhem Lavaux	4f9fd340f0	Indicate at which point of the text stream is the failure	2013-04-15 08:49:42 -04:00
P.M. Sutter	96a96f9680	better pruning of bad voids	2013-04-11 09:50:32 -05:00
P.M. Sutter	870e611b6a	Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification	2013-04-05 10:50:19 -05:00
Guilhem Lavaux	1a518dd8e5	Temporarily remove the OVERFLOW requirement in jozov2_io	2013-04-05 10:47:52 -05:00
P.M. Sutter	c999e9e235	Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification	2013-04-04 17:11:43 -05:00
Guilhem Lavaux	96b0ba3154	Fixed erroneous handling of zones with exact same leakage value in jozov2.	2013-04-04 12:04:52 -05:00
Guilhem Lavaux	85546379cf	Cleanup some development cruft and re-enable openmp clause in jozov2	2013-04-02 09:06:56 -05:00
Guilhem Lavaux	91a222a3c3	Re-Implemented jozov2 using priority_queues (far less complicated and maybe better performing)	2013-04-01 21:30:45 -05:00
P.M. Sutter	3a15a27955	Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification	2013-04-01 21:11:06 -05:00
Guilhem Lavaux	9a63f289d7	Take a few shortcuts in jozov2 to speed up the computation of the largest voids. The output does not seem totally consistent though.	2013-04-01 23:36:32 +02:00
Guilhem Lavaux	0879abed75	Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification	2013-04-01 23:34:19 +02:00
P.M. Sutter	69fdf9b669	pruneVoids now outputs a *complete* trimmed and untrimmed catalog, rather than just a centers_nocut_ file. centers_nocut_ is now removed and the untrimmed catalog has a prefix untrimmed_	2013-04-01 13:03:07 -05:00
Guilhem Lavaux	3df580e03e	Added more verbosity to track the evolution	2013-04-01 19:11:19 +02:00
P.M. Sutter	fef092df26	Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification	2013-04-01 10:40:52 -05:00
Guilhem Lavaux	45c9d4d62a	Temporarily disable new done_zones array	2013-04-01 10:25:15 -04:00
Guilhem Lavaux	d0901e6d95	Fixed zone lookup in jozov2	2013-04-01 10:15:11 -04:00
Guilhem Lavaux	33b32ea43d	Correct memory cleanup.	2013-04-01 09:43:05 -04:00
Guilhem Lavaux	b555533fa3	Added openmp-ization of jozov2_watershed	2013-04-01 09:39:58 -04:00
Guilhem Lavaux	9b0e7e115e	Splitted jozov2 into several files for better readability	2013-04-01 09:32:09 -04:00
Guilhem Lavaux	60e692a0cb	Removed old unused code (jozov_persistent). Activated jozov2 cleaned implementation of jozov in C++.	2013-04-01 09:02:59 -04:00
P.M. Sutter	a2ad3cc4f2	whoops, inserted a bug	2013-03-31 22:32:36 -05:00
P.M. Sutter	2e832dd415	void overlap now gets barycenters from center_ file rather than barycenter_ file	2013-03-31 22:04:27 -05:00
P.M. Sutter	4cd7408a8a	now switched to accepting only top-level voids; harmonized ancillary files (barycenters_, voidDesc_) to the output of centers_	2013-03-31 22:03:22 -05:00
Guilhem Lavaux	6a15e59521	Sort and use the sorted zone property to change some if statements	2013-03-31 19:35:03 -04:00
Guilhem Lavaux	311ac50344	Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification	2013-03-31 17:07:36 -04:00
Guilhem Lavaux	5a0f2383b3	Merge branch 'master' of ssh://bitbucket.org/cosmicvoids/void_identification	2013-03-31 17:01:47 -04:00
Guilhem Lavaux	af425f345d	Better hubble constant decoding in SDF	2013-03-31 17:01:44 -04:00
Guilhem Lavaux	e494ab1116	Free sorter	2013-03-31 11:09:34 -04:00
Guilhem Lavaux	9b7a931db9	New C++ jozov. Preliminary work before rewrite of the watershed transform algorithm.	2013-03-31 11:08:57 -04:00
P.M. Sutter	151c605335	pruneVoids now cleans out non-leaf voids; adjusted stackVoidsZero launcher to accept custom stacks	2013-03-30 15:24:45 -05:00
P.M. Sutter	2bc3b3ef27	pruneVoids now (rather clumsily) loads tree information; rejects voids that are not leaf nodes	2013-03-28 20:37:28 -05:00
P.M. Sutter	8043742123	added script to compare stacks and radial profiles of matched voids	2013-03-23 11:50:17 -05:00
P.M. Sutter	cb2b0de143	reset to original multidark loading	2013-03-21 21:54:02 -05:00
P.M. Sutter	7c172d5642	Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification	2013-03-20 07:19:34 -05:00
P.M. Sutter	c6a9a1c875	reconfigure multidark loader to work with sdf rescaling and shifts	2013-03-20 07:18:15 -05:00
Guilhem Lavaux	5cbf68e072	Added a check that the subsampling value is the adequate one.	2013-03-20 04:55:59 -04:00
Guilhem Lavaux	189fa22c6b	Generate a graceful error message instead of a Segmentation Fault	2013-03-19 16:36:26 -04:00
Guilhem Lavaux	a0d5b17164	Have an output that is more informative.	2013-03-19 10:45:33 -04:00
Guilhem Lavaux	17546f2a1e	Reenforce periodic boundaries (to deal with round-off error in float)	2013-03-19 10:00:25 -04:00