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https://bitbucket.org/cosmicvoids/vide_public.git
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pruneVoids now outputs a *complete* trimmed and untrimmed catalog, rather than just a centers_nocut_ file. centers_nocut_ is now removed and the untrimmed catalog has a prefix untrimmed_
This commit is contained in:
P.M. Sutter
parent
fef092df26
commit
69fdf9b669
1 changed files with 78 additions and 79 deletions
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@ -81,7 +81,8 @@ typedef struct voidStruct {
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gsl_matrix *evec;
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} VOID;
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void openFiles(string outputDir, string sampleName, string name,
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void openFiles(string outputDir, string sampleName,
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string prefix, string dataPortion,
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int mockIndex, int numKept,
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FILE** fpZobov, FILE** fpCenters,
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FILE** fpCentersNoCut,
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@ -93,10 +94,11 @@ void closeFiles(FILE* fpZobov, FILE* fpCenters,
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FILE* fpBarycenter, FILE* fpDistances, FILE* fpShapes,
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FILE* fpSkyPositions);
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void outputVoid(int iVoid, VOID outVoid, FILE* fpZobov, FILE* fpCenters,
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FILE* fpCentersNoCut,
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FILE* fpSkyPositions, FILE* fpBarycenters, FILE* fpDistances,
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FILE* fpShapes, bool isObservation, double *boxLen);
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void outputVoids(string outputDir, string sampleName, string prefix,
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string dataPortion, int mockIndex,
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vector<VOID> voids,
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bool isObservation, double *boxLen,
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bool doTrim);
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int main(int argc, char **argv) {
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@ -127,8 +129,7 @@ int main(int argc, char **argv) {
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int i, p, p2, numPartTot, numZonesTot, dummy, iVoid, iZ;
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int numVoids, mockIndex;
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double tolerance;
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FILE *fp, *fpZobov, *fpCenters, *fpCentersNoCut, *fpBarycenter,
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*fpDistances, *fpShapes, *fpSkyPositions;
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FILE *fp;
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PART *part, *voidPart;
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ZONE2PART *zones2Parts;
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VOID2ZONE *void2Zones;
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@ -140,12 +141,13 @@ int main(int argc, char **argv) {
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float centralRad, centralDen;
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double nearestEdge, redshift;
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char line[500], junkStr[10];
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string outputDir, sampleName, name;
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string outputDir, sampleName, dataPortion, prefix;
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int mask_index;
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double ranges[3][2], boxLen[3], mul;
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double volNorm, radius;
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int clock1, clock2;
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int periodicX=0, periodicY=0, periodicZ=0;
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string dataPortions[2];
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gsl_eigen_symmv_workspace *eigw = gsl_eigen_symmv_alloc(3);
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@ -707,44 +709,35 @@ int main(int argc, char **argv) {
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printf(" We have %d too high central density\n", numHighDen);
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printf(" We have %d that are not leaf nodes\n", numAreParents);
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printf(" Output...\n");
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printf(" Output trimmed catalog...\n");
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outputDir = string(args.outputDir_arg);
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sampleName = (string(args.sampleName_arg)+".out");
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name = "central";
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openFiles(outputDir, sampleName, name,
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mockIndex, voids.size(),
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&fpZobov, &fpCenters, &fpCentersNoCut, &fpBarycenter,
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&fpDistances, &fpShapes, &fpSkyPositions);
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for (iVoid = 0; iVoid < voids.size(); iVoid++) {
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if (voids[iVoid].voidType == CENTRAL_VOID) {
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outputVoid(iVoid, voids[iVoid], fpZobov, fpCenters,
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fpCentersNoCut, fpSkyPositions,
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fpBarycenter, fpDistances, fpShapes,
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args.isObservation_flag, boxLen);
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}
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}
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closeFiles(fpZobov, fpCenters, fpCentersNoCut, fpBarycenter,
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fpDistances, fpShapes, fpSkyPositions);
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name = "all";
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openFiles(outputDir, sampleName, name,
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mockIndex, voids.size(),
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&fpZobov, &fpCenters, &fpCentersNoCut, &fpBarycenter,
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&fpDistances, &fpShapes, &fpSkyPositions);
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for (iVoid = 0; iVoid < voids.size(); iVoid++) {
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if (voids[iVoid].voidType == EDGE_VOID ||
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voids[iVoid].voidType == CENTRAL_VOID) {
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outputVoid(iVoid, voids[iVoid], fpZobov, fpCenters,
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fpCentersNoCut, fpSkyPositions,
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fpBarycenter, fpDistances, fpShapes,
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args.isObservation_flag, boxLen);
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}
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dataPortions[0] = "central";
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dataPortions[1] = "all";
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prefix = "";
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for (int i = 0; i < 2; i++) {
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dataPortion = dataPortions[i];
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outputVoids(outputDir, sampleName, prefix, dataPortion,
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mockIndex,
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voids,
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args.isObservation_flag, boxLen, true);
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}
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closeFiles(fpZobov, fpCenters, fpCentersNoCut, fpBarycenter,
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fpDistances, fpShapes, fpSkyPositions);
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printf(" Output untrimmed catalog...\n");
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prefix = "untrimmed_";
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for (int i = 0; i < 2; i++) {
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dataPortion = dataPortions[i];
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outputVoids(outputDir, sampleName, prefix, dataPortion,
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mockIndex,
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voids,
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args.isObservation_flag, boxLen, false);
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}
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clock2 = clock();
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printf(" Time: %f sec (for %d voids)\n",
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@ -753,37 +746,32 @@ int main(int argc, char **argv) {
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printf("Done!\n");
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return 0;
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} // end main
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// ----------------------------------------------------------------------------
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void openFiles(string outputDir, string sampleName, string name,
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void openFiles(string outputDir, string sampleName,
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string prefix, string dataPortion,
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int mockIndex, int numKept,
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FILE** fpZobov, FILE** fpCenters,
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FILE** fpCentersNoCut,
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FILE** fpBarycenter, FILE** fpDistances, FILE** fpShapes,
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FILE** fpSkyPositions) {
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*fpZobov = fopen((outputDir+"/voidDesc_"+name+"_"+sampleName).c_str(), "w");
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*fpZobov = fopen((outputDir+"/"+prefix+"voidDesc_"+dataPortion+"_"+sampleName).c_str(), "w");
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fprintf(*fpZobov, "%d particles, %d voids.\n", mockIndex, numKept);
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fprintf(*fpZobov, "Void# FileVoid# CoreParticle CoreDens ZoneVol Zone#Part Void#Zones VoidVol Void#Part VoidDensContrast VoidProb\n");
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*fpBarycenter = fopen((outputDir+"/barycenters_"+name+"_"+sampleName).c_str(), "w");
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*fpBarycenter = fopen((outputDir+"/"+prefix+"barycenters_"+dataPortion+"_"+sampleName).c_str(), "w");
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*fpCenters = fopen((outputDir+"/centers_"+name+"_"+sampleName).c_str(), "w");
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*fpCenters = fopen((outputDir+"/"+prefix+"centers_"+dataPortion+"_"+sampleName).c_str(), "w");
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fprintf(*fpCenters, "# center x,y,z (Mpc/h), volume (normalized), radius (Mpc/h), redshift, volume (Mpc/h^3), void ID, density contrast, num part, parent ID, number of children\n");
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*fpCentersNoCut = fopen((outputDir+"/centers_nocut_"+name+"_"+sampleName).c_str(), "w");
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fprintf(*fpCentersNoCut, "# center x,y,z (Mpc/h), volume (normalized), radius (Mpc/h), redshift, volume (Mpc/h^3), void ID, density contrast, num part, parent ID, number of children\n");
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*fpDistances = fopen((outputDir+"/"+prefix+"boundaryDistances_"+dataPortion+"_"+sampleName).c_str(), "w");
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*fpDistances = fopen((outputDir+"boundaryDistances_"+name+"_"+sampleName).c_str(), "w");
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*fpSkyPositions = fopen((outputDir+"/sky_positions_"+name+"_"+sampleName).c_str(), "w");
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*fpSkyPositions = fopen((outputDir+"/"+prefix+"sky_positions_"+dataPortion+"_"+sampleName).c_str(), "w");
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fprintf(*fpSkyPositions, "# RA, dec, redshift, radius (Mpc/h), void ID\n");
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*fpShapes = fopen((outputDir+"/shapes_"+name+"_"+sampleName).c_str(), "w");
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*fpShapes = fopen((outputDir+"/"+prefix+"shapes_"+dataPortion+"_"+sampleName).c_str(), "w");
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fprintf(*fpShapes, "# void ID, eig(1), eig(2), eig(3), eigv(1)-x, eiv(1)-y, eigv(1)-z, eigv(2)-x, eigv(2)-y, eigv(2)-z, eigv(3)-x, eigv(3)-y, eigv(3)-z\n");
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} // end openFiles
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@ -791,13 +779,11 @@ void openFiles(string outputDir, string sampleName, string name,
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// ----------------------------------------------------------------------------
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void closeFiles(FILE* fpZobov, FILE* fpCenters,
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FILE* fpCentersNoCut,
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FILE* fpBarycenter, FILE* fpDistances, FILE* fpShapes,
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FILE* fpSkyPositions) {
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fclose(fpZobov);
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fclose(fpCenters);
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fclose(fpCentersNoCut);
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fclose(fpBarycenter);
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fclose(fpDistances);
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fclose(fpShapes);
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@ -806,10 +792,35 @@ void closeFiles(FILE* fpZobov, FILE* fpCenters,
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} // end closeFile
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// ----------------------------------------------------------------------------
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void outputVoid(int iVoid, VOID outVoid, FILE* fpZobov, FILE* fpCenters,
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FILE* fpCentersNoCut, FILE* fpSkyPositions,
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FILE* fpBarycenters, FILE* fpDistances, FILE* fpShapes,
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bool isObservation, double *boxLen) {
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void outputVoids(string outputDir, string sampleName, string prefix,
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string dataPortion, int mockIndex,
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vector<VOID> voids,
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bool isObservation, double *boxLen, bool doTrim) {
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int iVoid;
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VOID outVoid;
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FILE *fp, *fpZobov, *fpCenters, *fpCentersNoCut, *fpBarycenter,
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*fpDistances, *fpShapes, *fpSkyPositions;
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openFiles(outputDir, sampleName, prefix, dataPortion,
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mockIndex, voids.size(),
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&fpZobov, &fpCenters, &fpBarycenter,
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&fpDistances, &fpShapes, &fpSkyPositions);
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for (iVoid = 0; iVoid < voids.size(); iVoid++) {
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outVoid = voids[iVoid];
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if (dataPortion == "central" && outVoid.voidType == EDGE_VOID) {
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continue;
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}
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//if (doTrim && (outVoid.hasHighCentralDen)) {
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if (doTrim && (outVoid.hasHighCentralDen || !outVoid.isLeaf)) {
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continue;
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}
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double outCenter[3];
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outCenter[0] = outVoid.barycenter[0];
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@ -822,23 +833,6 @@ void outputVoid(int iVoid, VOID outVoid, FILE* fpZobov, FILE* fpCenters,
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outCenter[2] = (outVoid.barycenter[2]-boxLen[2]/2.)*100.;
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}
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fprintf(fpCentersNoCut, "%.2f %.2f %.2f %.2f %.2f %.5f %.2f %d %f %d %d %d\n",
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outCenter[0],
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outCenter[1],
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outCenter[2],
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outVoid.vol,
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outVoid.radius,
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outVoid.redshift,
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4./3.*M_PI*pow(outVoid.radius, 3),
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outVoid.voidID,
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outVoid.densCon,
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outVoid.numPart,
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outVoid.parentID,
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outVoid.numChildren);
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if (outVoid.hasHighCentralDen || !outVoid.isLeaf) {
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return;
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}
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fprintf(fpZobov, "%d %d %d %f %f %d %d %f %d %f %f\n",
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iVoid,
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@ -853,7 +847,7 @@ void outputVoid(int iVoid, VOID outVoid, FILE* fpZobov, FILE* fpCenters,
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outVoid.densCon,
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outVoid.voidProb);
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fprintf(fpBarycenters, "%d %e %e %e\n",
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fprintf(fpBarycenter, "%d %e %e %e\n",
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outVoid.voidID,
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outVoid.barycenter[0],
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outVoid.barycenter[1],
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@ -902,4 +896,9 @@ void outputVoid(int iVoid, VOID outVoid, FILE* fpZobov, FILE* fpCenters,
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gsl_matrix_get(outVoid.evec, 2 ,2)
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);
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} // end outputVoid
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} // end iVoid
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closeFiles(fpZobov, fpCenters, fpBarycenter,
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fpDistances, fpShapes, fpSkyPositions);
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} // end outputVoids
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