Commit graph

9 commits

Author SHA1 Message Date
Richard Stiskalek
e972f8e3f2
Add pynbody and other support (#92)
* Simplify box units

* Move old scripts

* Add printing

* Update readers

* Disable boundscheck

* Add new ordering

* Clean up imports

* Enforce dtype and add mass to quijote

* Simplify print statements

* Fix little typos

* Fix key bug

* Bug fixing

* Delete boring comments

* Improve ultimate clumps for PHEW

* Delete boring comments

* Add basic reading

* Remove 0th index HID

* Add flipping of X and Z

* Updates to halo catalogues

* Add ordered caching

* Fix flipping

* Add new flags

* Fix PHEW empty clumps

* Stop over-wrriting

* Little improvements to angular neighbours

* Add catalogue masking

* Change if-else statements

* Cache only filtered data

* Add PHEW cats

* Add comments

* Sort imports

* Get Quijote workign

* Docs

* Add HMF calculation

* Move to old

* Fix angular

* Add great circle distance

* Update imports

* Update impotrts

* Update docs

* Remove unused import

* Fix a quick bug

* Update compatibility

* Rename files

* Renaming

* Improve compatiblity

* Rename snapsht

* Fix snapshot bug

* Update interface

* Finish updating interface

* Update all paths

* Add old scripts

* Add basic halo

* Update imports

* Improve snapshot processing

* Update ordering

* Fix how CM positions accessed

* Add merger paths

* Add imports

* Add merger reading

* Add making a merger tree

* Add a basic merger tree reader

* Add imports

* Add main branch walking + comments + debuggin

* Get tree running

* Add working merger tree walking along main branch

* Add units conversion for merger data

* Add hid_to_array_index

* Update merger tree

* Add mergertree mass to PHEWcat

* Edit comments

* Add this to track changes...

* Fix a little bug

* Add mergertree mass

* Add cache clearing

* Improve summing substructure code

* Littbe bug

* Little updates to the merger tree reader

* Update .giignore

* Add box selection

* Add optional deletingf of a group

* add to keep track of changes

* Update changes

* Remove

* Add manual tracker

* Fix bug

* Add m200c_to_r200c

* Add manual halo tracking

* Remove skipped snapshots

* update cosmo params to match csiborg

* remove old comments

* Add SDSSxALFALFA

* Fix bugs

* Rename

* Edit paths

* Updates

* Add comments

* Add comment

* Add hour conversion

* Add imports

* Add new observation class

* Add selection

* Add imports

* Fix small bug

* Add field copying for safety

* Add matching to survey without masking

* Add P(k) calculation

* Add nb

* Edit comment

* Move files

* Remove merger import

* Edit setup.yp

* Fix typo

* Edit import warnigns

* update nb

* Update README

* Update README

* Update README

* Add skeleton

* Add skeleton
2023-12-07 14:23:32 +00:00
Richard Stiskalek
ae92fd9b72
Velocity observer (#86)
* Continue if r200c not defined

* Remove smooth scale

* Remove smooth scale

* Edit Max Matching plot

* Add peculiar velocity

* Add Vobs calculation

* Edit docs

* Add Vobs plot

* Improve plotting

* Edit naming convention

* Make a note

* Add new cat options

* Update density field RSP calculation

* Update field 2 rsp

* Move functions and shorten documentation

* Improve transforms and comments

* Update docs

* Update imports

* Edit calculation

* Add docs

* Remove imports

* Add Quijote flags

* Edit documentation

* Shorten documentation

* Edit func calls

* Shorten

* Docs edits

* Edit docs

* Shorten docs

* Short docs edits

* Simplify docs a little bit

* Save plotting

* Update env
2023-08-30 23:27:20 +01:00
Richard Stiskalek
8e3127f4d9
New plots (#85)
* Update verbosity messages

* Update verbosity messags

* Update more verbosity flags

* Update the iterator settings

* Add basic plots

* Update verbosity flags

* Update arg parsre

* Update plots

* Remove some older code

* Fix some definitions

* Update plots

* Update plotting

* Update plots

* Add support functions

* Update nb

* Improve plots, move back to scripts

* Update plots

* pep8

* Add max overlap plot

* Add blank line

* Upload changes

* Update changes

* Add weighted stats

* Remove

* Add import

* Add Max's matching

* Edit submission

* Add paths to Max's matching

* Fix matching

* Edit submission

* Edit plot

* Add max overlap separation plot

* Add periodic distance

* Update overlap summaries

* Add nsim0 for Max matvhing

* Add Max's agreement plot

* Add Quijote for Max method

* Update ploitting

* Update name
2023-08-18 19:20:47 +01:00
rstiskalek
7ef36c7ac0 Add mass to name 2023-08-08 11:46:56 +01:00
Richard Stiskalek
344ff8e091
Fixing overlaps and halo definitions. (#80)
* Add imports

* Refactor code

* Rename fof velocities

* Clean up and add Quijote

* Edit docstrings

* Update submission script

* Fix bug

* Start loading fitted properties

* Edit docstrings

* Update fitting for new `halo`

* Update CM definition and R200c

* Tune the minimum number of particles

* Enforce crossing threshold & tune hypers

* Fix periodiity when calculating angmom

* Doc strings

* Relax checkip

* Minor edit

* Fix old kwarg bug

* Fix CSiBORG bounds

* Catch warnings!

* Add `mass_kind` and new boundaries
2023-07-31 16:13:21 +02:00
Richard Stiskalek
27e1c181a2
Moving environment to RS (#70)
* Drag several fields at once

* add env in RSP

* Add docstrings

* Make __main__

* Fix bug

* Fix plotting little bug
2023-06-18 11:42:21 +01:00
Richard Stiskalek
2185846e90
CDF for nearest neighbour (#63)
* Updat ebounds

* fix mistake

* add plot script

* fix which sims

* Add Poisson

* Just docs

* Hide things to __main__

* Rename paths

* Move old script

* Remove radpos

* Paths renaming

* Paths renaming

* Remove trunk stuff

* Add import

* Add nearest neighbour search

* Add Quijote fiducial indices

* Add final snapshot matching

* Add fiducial observer selection

* add boxsizes

* Add reading functions

* Little stuff

* Bring back the fiducial observer

* Add arguments

* Add quijote paths

* Add notes

* Get this running

* Add yaml

* Remove Poisson stuff

* Get the 2PCF script running

* Add not finished htings

* Remove comment

* Verbosity only on 0th rank!

* Update plotting style

* Add nearest neighbour CDF

* Save radial distance too

* Add centres

* Add basic plotting
2023-05-21 22:46:28 +01:00
Richard Stiskalek
1d847cbd06
Add Quijote (#61)
* Rename paths object

* Remove redshift calculation

* Explicit keywrod arg

* Rename box units

* Basic renaming

* Little docs

* Rename paths

* add imports

* Sort imports

* Add Quijote cat

* Split boxes

* add Quijote path

* Add origin argument

* Update nbs
2023-05-13 17:37:34 +01:00
Richard Stiskalek
b710b8e89c
Add new ICs (#59)
* edit IC paths

* Remove import

* Edit path

* Change naming

* Add __main__

* Script to match everything

* Edit docs

* Remove test statement

* Move import

* Update nb
2023-05-09 16:18:01 +01:00