Commit graph

48 commits

Author SHA1 Message Date
rstiskalek
184eed99be Rename nb 2024-10-07 21:32:14 +01:00
Richard Stiskalek
76a7609f7f
Direct distance sampling (#155)
* Update nb

* Update dependency

* Pass marg arg

* Add mu sampling

* Update imprts

* Move cosmography to a ceparate module

* Add mock void

* Check Vext likelihoo

* Add void mock

* Add void mocks
2024-10-07 22:16:35 +02:00
rstiskalek
d6336be952 Update nbs 2024-10-02 18:07:30 +01:00
rstiskalek
088e521440 Update labels 2024-10-02 18:05:02 +01:00
rstiskalek
0ed1161a96 Update plot 2024-09-26 16:03:47 +01:00
Richard Stiskalek
f7d16a9cd0
More ABSMAG (#152)
* Add draft of code

* Update defaults

* Update nb

* Update nb

* Update script

* Update script

* Update script

* Indicate that not implemented
2024-09-25 15:30:06 +02:00
Richard Stiskalek
c881f8eb39
Void boost along axis. (#151)
* Add Vmag along model ax

* Fix typo

* Updat evoid plots

* Add label

* Update script

* Update defaults
2024-09-23 12:33:48 +02:00
rstiskalek
6974deca91 Add nb 2024-09-23 10:24:07 +01:00
rstiskalek
8b92d632aa Update name 2024-09-23 10:23:33 +01:00
Richard Stiskalek
0bec52dd36
Add void interpolation (#150)
* Update imports

* Remove multiple ICs for void

* Update submit

* Add void support

* All the void support

* Little update

* Update nb

* Update script
2024-09-21 18:12:15 +02:00
Richard Stiskalek
4fa0e04f6e
Add more MANTICORE (#148)
* Add path to fields

* Add new Manticore field support

* Downsample Manticore to 20 snapshots

* Add manticore snapshot

* Remove downsampling

* Add Manticore

* Add names of manti

* Add manti

* Simplify

* Update script

* Update CF4 ICs

* Updaet LOS settings

* Update nb

* Update imports

* Reorganise funcs

* Update script

* Add basic void model
2024-09-21 14:48:23 +02:00
rstiskalek
1fc9ca9306 Update name 2024-09-18 23:42:38 +01:00
rstiskalek
0a58e7c158 Update nb 2024-09-18 23:42:17 +01:00
rstiskalek
3ca8fb732f Update plotting 2024-09-18 14:20:39 +01:00
rstiskalek
b3a0ca7ff6 Update nb 2024-09-17 21:01:15 +01:00
rstiskalek
ce4fee262e Update nb 2024-09-17 13:11:53 +01:00
rstiskalek
09b7e2258b Update nb 2024-09-17 13:11:31 +01:00
rstiskalek
929ddacb5b Update nb 2024-09-17 10:53:42 +01:00
rstiskalek
b618897869 Update nb 2024-09-17 10:26:48 +01:00
rstiskalek
cced851d4a Add names 2024-09-17 10:26:24 +01:00
rstiskalek
60ceceb24d Add void tests 2024-09-17 10:26:04 +01:00
Richard Stiskalek
9c1aa26428
Attempt at absolute calibration and more (#146)
* Update nb

* Update defaults

* Add absolute calibration to fpath

* Add basic absolute calibration

* Switch to log density

* Feed in r directly

* Add more complex spacing option

* Update script

* Comment out abs calibration for now

* Update script

* Add MB profile

* Add script

* Update submit for all profiles

* Update

* Add option

* Add iterator over sims

* Update defaults on alpha

* Update script

* Parallelise script

* Switch to feasible init

* Switch to median init

* Add vext option

* Remove file if exists

* Add optional sample_Vext

* Add param

* rm print

* Add more iterator

* Update script

* Update nb

* Update nb
2024-09-16 12:12:32 +02:00
Richard Stiskalek
32e36afdc3
Add CLONES support (#145)
* Add submit script

* Add support for gadget2

* Add OMP

* Lower resolution

* Update resolution again

* Add selection on galactic latitude

* Update name

* Update nb

* Update nb

* Add CLONES params

* Add import

* Add CLONES path

* Add CLONES reader

* Quick fix

* Add CLONES

* Update slice nb

* Update nb

* Update nb

* Tiny updates

* Update nb

* Add name

* Add CLONES support

* Add CF4 field

* Add CLONES

* Update script

* Update nb

* Update nb
2024-09-12 17:04:25 +02:00
Richard Stiskalek
2b938c112c
More flow preparation & Olympics (#143)
* Add more comments

* Add flow paths

* Simplify paths

* Update default arguemnts

* Update paths

* Update param names

* Update some of scipts for reading files

* Add the Mike method option

* Update plotting

* Update fnames

* Simplify things

* Make more default options

* Add print

* Update

* Downsample CF4

* Update numpyro selection

* Add selection fitting nb

* Add coeffs

* Update script

* Add nb

* Add label

* Increase number of steps

* Update default params

* Add more labels

* Improve file name

* Update nb

* Fix little bug

* Remove import

* Update scales

* Update labels

* Add script

* Update script

* Add more

* Add more labels

* Add script

* Add submit

* Update spacing

* Update submit scrips

* Update script

* Update defaults

* Update defaults

* Update nb

* Update test

* Update imports

* Add script

* Add support for Indranil void

* Add a dipole

* Update nb

* Update submit

* Update Om0

* Add final

* Update default params

* Fix bug

* Add option to fix to LG frame

* Add Vext label

* Add Vext label

* Update script

* Rm fixed LG

* rm LG stuff

* Update script

* Update bulk flow plotting

* Update nb

* Add no field option

* Update defaults

* Update nb

* Update script

* Update nb

* Update nb

* Add names to plots

* Update nb

* Update plot

* Add more latex names

* Update default

* Update nb

* Update np

* Add plane slicing

* Add nb with slices

* Update nb

* Update script

* Upddate nb

* Update nb
2024-09-11 08:45:42 +02:00
Richard Stiskalek
3b46f17ead
Combine PV samples (#139)
* Update imports

* Update submission script

* Update script

* Add simulataenous sampling of many catalogues

* Update nb
2024-07-30 17:02:48 +01:00
Richard Stiskalek
b22da9893f
Pantheon+ covariance (#138)
* Add improt

* Add PP reading attempt

* Remoe odd step requirement

* Update script

* Add CF4

* Add CF4

* Fix path bug

* Update scripts

* Update nb

* Update script
2024-07-25 14:53:18 +01:00
Richard Stiskalek
8d49aa071b
More LOS (#137)
* Switch to CB2

* Update for extrapolation

* Add 'nan' extrapolation

* Update nb

* Update submits

* Add Rmax to the models

* Update nb

* Add print statement

* Update script settings

* Update flow model to new method

* Update printing

* Update path

* Update so that it works

* Update nb

* Update submit

* Add Rmin for hollow bulk flows

* Update script

* Update script

* Update scripts back

* Update scripts back

* Fix normalization bug

* Update script

* pep8
2024-07-25 11:48:37 +01:00
Richard Stiskalek
68fbd594cd
Add monopole to VF (#136)
* Add monopole sampling

* Add monopole

* Update script

* Bring back zmax

* Add monopole

* Add condition in case division by 0

* Add monopole to field

* Update nb

* Update script

* Update scripts

* Simplify docs
2024-07-13 21:52:42 +01:00
Richard Stiskalek
43ebf660ee
Update prior in VF (#135)
* Update priors

* Update submit

* Update README

* Relax width of calibration priors

* Relax width of calibration priors

* Update smooth scales

* Update settings

* Update README

* Update submit

* Add names

* Update nb

* Fix bug

* Update script

* Move files

* Small bug fix

* Add script

* Add script

* Add script

* Add more power

* Update script

* Quick fix

* Rm blank line

* Update nb

* Update nb

* Update nb
2024-07-12 15:46:45 +01:00
rstiskalek
9c9c6a78e5 Update nb 2024-07-05 11:28:06 +01:00
rstiskalek
3343863e42 Update nb 2024-07-03 09:51:00 +01:00
rstiskalek
9b8fc5c573 Update params 2024-07-03 09:50:33 +01:00
rstiskalek
cec54ec629 Update params 2024-07-03 09:50:21 +01:00
rstiskalek
4e25091c23 Update bulkflow calculation 2024-07-03 09:50:02 +01:00
Richard Stiskalek
c6f49790bf
Plots of VF (#134)
* Add VF plots

* Update nb

* Add CMB velocity note

* rm nb

* Add option to return alllikelihood

* Add simulation weights

* Update nb

* Add bulkflow

* Update nb

* Add values of beta

* Update imports

* Update imports

* Add paths to Carrick and Lilow fiels

* Add Carrick and Lilow fields

* Add support for more fields

* Update bulkflow comp

* Update nb

* Update script
2024-07-01 11:48:50 +01:00
rstiskalek
19630cbc60 Update nb 2024-06-28 12:44:37 +01:00
Richard Stiskalek
84a1609d77
Add Lilow2024 velocity fields (#133)
* Add Lilow data

* Fix Lilow NaNs

* Update nb

* Update nb
2024-06-28 11:55:42 +01:00
Richard Stiskalek
301ff61e89
Add CF4 mean & std (#132)
* Add observer velocity

* Add radec to supergalactic

* Update script

* Add CF4 params

* Add paths to CF4

* Add CF4 but not sth wrong

* Update nb

* Remove errors

* Update nb

* Update scripts
2024-06-27 15:02:33 +01:00
rstiskalek
76e8f71556 Update nb 2024-06-26 10:46:33 +01:00
Richard Stiskalek
ce55a2b47e
Add marginalization over boxes (#131)
* Parallelize over simulations

* Update docs

* Update dependency

* Update imports

* Add adtitional dependencies

* Update .gitignore

* Update ERADME

* Simplify numpyro GOF

* Speed up GOF

* Deepcopy samples

* Update scripts

* Add GPU acceleration

* Select boxes

* Update script

* Optionally sample beta

* Fix old code

* Simplify code

* Start saving log posterior

* Start popping log_likeliood

* Add imports

* Add converting samples

* Fix sctipt name

* Add evidence with harmonic

* Remove comment

* Update imports

* Update imports so that pylians not required

* Stop requiring Pylians to be installed

* Update submission scripts for loops

* Update nb

* Update nb

* Add Manticore boxes

* Add verbosity flag

* Add bulk flow

* Update script

* Update nb

* Update normalization

* Update submit

* Update nb
2024-06-26 10:43:26 +01:00
Richard Stiskalek
ffaf92cd4b
Add Manticore (#130)
* Add CB2X paths

* Update imports

* Add CB2 params

* Add CB2x fields

* Add CB2X field

* Add parallelized

* Add **kwargs

* Update nb

* Minor updates
2024-06-21 19:21:06 +01:00
Richard Stiskalek
779f2e76ac
Calculate upglade redshifts (#128)
* Update redshift reading

* Add helio to CMB redshift

* Update imports

* Update nb

* Run for Quijote

* Add script

* Update

* Update .gitignore

* Update imports

* Add Peery estimator

* Add bulk flow scripts

* Update typs

* Add comment

* Add blank space

* Update submission script

* Update description

* Add barriers

* Update nb

* Update nb

* Rename script

* Move to old

* Update imports

* Add nb

* Update script

* Fix catalogue key

* Update script

* Update submit

* Update comment

* Update .gitignore

* Update nb

* Update for stationary obsrevers

* Update submission

* Add nb

* Add better verbose control

* Update nb

* Update submit

* Update nb

* Add SN errors

* Add draft of the script

* Update verbosity flags

* Add submission script

* Debug script

* Quickfix

* Remove comment

* Update nb

* Update submission

* Update nb

* Processed UPGLADE
2024-06-20 14:33:00 +01:00
rstiskalek
b7d8d3da4d Add nb 2024-05-09 16:29:22 +01:00
rstiskalek
13a10ccedd pep8 2024-04-23 12:03:47 +01:00
Richard Stiskalek
c4557cf35b
Matching of observations (#127)
* Rename file

* Add indents

* Update imports

* Add counting

* Docs

* Add nb

* Rename nb

* Update nb

* Add PV processing

* Update nb

* Add Pantheon+groups

* Update submission scripts

* Add Pantheon+zSN

* Update nb

* Edit param

* Matchin SFI

* Update nb

* Fix path bug

* Add list of clusters

* Update imports

* Update imports

* Add cartesian & mass of clusters

* Add observation to halo matching

* Add nb

* Add inverse CDF

* Add import

* Update nb

* Add comments
2024-04-23 12:02:09 +01:00
Richard Stiskalek
3876985f26
Extend enclosed density to all CB2 (#126)
* Add borg2 flag

* add borg2_all

* Undo a comment?

* ADd borg2

* Update notebook

* Update nb

* Add external halo catalogue

* Add MDPL2

* Add BORG2 density profile plot

* Add more params

* Add comments
2024-04-10 11:34:07 +02:00
rstiskalek
7330e535f7 Update notebook 2024-04-08 23:14:43 +01:00
Richard Stiskalek
ee222cd010
Fix overlap runs (#125)
* Update nb

* Update script

* Update script

* Rename

* Update script

* Update script

* Remove warning

* Ignore minors when extracting MAH

* Fix paths bug

* Move notebooks

* Move files

* Rename and delete things

* Rename file

* Move file

* Rename things

* Remove old print statement

* Add basic MAH plot

* Add random MAH path

* Output snapshot numbers

* Add MAH random extraction

* Fix redshift bug

* Edit script

* Add extracting random MAH

* Little updates

* Add CB2 redshift

* Add some caching

* Add diagnostic plots

* Add caching

* Minor updates

* Update nb

* Update notebook

* Update script

* Add Sorce randoms

* Add CB2 varysmall

* Update nb

* Update nb

* Update nb

* Use catalogue HMF

* Move definition of radec2galactic

* Update nb

* Update import

* Update import

* Add galatic coords to catalogues

* Update nb
2024-04-08 11:23:21 +02:00