Richard Stiskalek
ce55a2b47e
Add marginalization over boxes ( #131 )
...
* Parallelize over simulations
* Update docs
* Update dependency
* Update imports
* Add adtitional dependencies
* Update .gitignore
* Update ERADME
* Simplify numpyro GOF
* Speed up GOF
* Deepcopy samples
* Update scripts
* Add GPU acceleration
* Select boxes
* Update script
* Optionally sample beta
* Fix old code
* Simplify code
* Start saving log posterior
* Start popping log_likeliood
* Add imports
* Add converting samples
* Fix sctipt name
* Add evidence with harmonic
* Remove comment
* Update imports
* Update imports so that pylians not required
* Stop requiring Pylians to be installed
* Update submission scripts for loops
* Update nb
* Update nb
* Add Manticore boxes
* Add verbosity flag
* Add bulk flow
* Update script
* Update nb
* Update normalization
* Update submit
* Update nb
2024-06-26 10:43:26 +01:00
Richard Stiskalek
ffaf92cd4b
Add Manticore ( #130 )
...
* Add CB2X paths
* Update imports
* Add CB2 params
* Add CB2x fields
* Add CB2X field
* Add parallelized
* Add **kwargs
* Update nb
* Minor updates
2024-06-21 19:21:06 +01:00
Richard Stiskalek
d3b4bfd29c
Remove overly verbose code ( #129 )
...
* Remove not necessary comments
* Simplify
* Remove unnecessary comments
* Remove verbose comments
* Remove unnecessary verbosity
* Update params
* Remove verbose
* Simplify verbosity
* Simploify comments
* Remove more silly verbosity
2024-06-21 13:35:45 +01:00
Richard Stiskalek
779f2e76ac
Calculate upglade redshifts ( #128 )
...
* Update redshift reading
* Add helio to CMB redshift
* Update imports
* Update nb
* Run for Quijote
* Add script
* Update
* Update .gitignore
* Update imports
* Add Peery estimator
* Add bulk flow scripts
* Update typs
* Add comment
* Add blank space
* Update submission script
* Update description
* Add barriers
* Update nb
* Update nb
* Rename script
* Move to old
* Update imports
* Add nb
* Update script
* Fix catalogue key
* Update script
* Update submit
* Update comment
* Update .gitignore
* Update nb
* Update for stationary obsrevers
* Update submission
* Add nb
* Add better verbose control
* Update nb
* Update submit
* Update nb
* Add SN errors
* Add draft of the script
* Update verbosity flags
* Add submission script
* Debug script
* Quickfix
* Remove comment
* Update nb
* Update submission
* Update nb
* Processed UPGLADE
2024-06-20 14:33:00 +01:00
rstiskalek
c447d2e7b0
Add nbs
2024-05-09 16:29:34 +01:00
rstiskalek
b7d8d3da4d
Add nb
2024-05-09 16:29:22 +01:00
rstiskalek
13a10ccedd
pep8
2024-04-23 12:03:47 +01:00
Richard Stiskalek
c4557cf35b
Matching of observations ( #127 )
...
* Rename file
* Add indents
* Update imports
* Add counting
* Docs
* Add nb
* Rename nb
* Update nb
* Add PV processing
* Update nb
* Add Pantheon+groups
* Update submission scripts
* Add Pantheon+zSN
* Update nb
* Edit param
* Matchin SFI
* Update nb
* Fix path bug
* Add list of clusters
* Update imports
* Update imports
* Add cartesian & mass of clusters
* Add observation to halo matching
* Add nb
* Add inverse CDF
* Add import
* Update nb
* Add comments
2024-04-23 12:02:09 +01:00
Richard Stiskalek
3876985f26
Extend enclosed density to all CB2 ( #126 )
...
* Add borg2 flag
* add borg2_all
* Undo a comment?
* ADd borg2
* Update notebook
* Update nb
* Add external halo catalogue
* Add MDPL2
* Add BORG2 density profile plot
* Add more params
* Add comments
2024-04-10 11:34:07 +02:00
rstiskalek
7330e535f7
Update notebook
2024-04-08 23:14:43 +01:00
rstiskalek
096f2055c9
Add MDPL2 HMF
2024-04-08 10:39:41 +01:00
Richard Stiskalek
ee222cd010
Fix overlap runs ( #125 )
...
* Update nb
* Update script
* Update script
* Rename
* Update script
* Update script
* Remove warning
* Ignore minors when extracting MAH
* Fix paths bug
* Move notebooks
* Move files
* Rename and delete things
* Rename file
* Move file
* Rename things
* Remove old print statement
* Add basic MAH plot
* Add random MAH path
* Output snapshot numbers
* Add MAH random extraction
* Fix redshift bug
* Edit script
* Add extracting random MAH
* Little updates
* Add CB2 redshift
* Add some caching
* Add diagnostic plots
* Add caching
* Minor updates
* Update nb
* Update notebook
* Update script
* Add Sorce randoms
* Add CB2 varysmall
* Update nb
* Update nb
* Update nb
* Use catalogue HMF
* Move definition of radec2galactic
* Update nb
* Update import
* Update import
* Add galatic coords to catalogues
* Update nb
2024-04-08 11:23:21 +02:00
rstiskalek
c71f5a8513
Upgrade nb
2024-04-03 13:44:55 +01:00
Richard Stiskalek
380c2f8df0
Stacking p(zcosmo | ... ) ( #124 )
...
* Update nb
* Add import
* Add posterior stacking
2024-04-02 11:45:18 +02:00
rstiskalek
24cab8555a
Update nb
2024-04-02 09:28:57 +01:00
Richard Stiskalek
da43031877
Tests on mock PV catalogues ( #123 )
...
* Rename nb
* Add nb
* Update scrtip
* Update script
* Add reading of CB2 mocks
* CB2 mocks support
* Add mock generator
* Add mock support
* Add CB2 mock support
* Update nb for mocks
* Update script
* Update nb
* Update nbs
2024-04-02 00:19:14 +02:00
rstiskalek
7259993524
Rename file
2024-04-01 14:49:24 +01:00
Richard Stiskalek
0842f12741
Add script
2024-04-01 15:48:23 +02:00
Richard Stiskalek
8e9645e202
Add p(z_cosmo | z_obs) ( #122 )
...
* Add import
* Add draft of the p(zcosmo)
* Add option for additional uncertainty
* Variable renaming
* Add zcosmo predict for flow calibration
* Add flow map notebook
* Update notebook
* Add posterior mean & std
* Edit docstring
2024-04-01 15:44:20 +02:00
rstiskalek
e3a645c935
Update nb
2024-03-28 12:23:52 +00:00
Richard Stiskalek
29b37172fa
Add SFI groups ( #121 )
...
* Update LOS sampling
* Bring SD back to speed
* Update nb
* Update script
* Update requirements
* Update flow chi2 calc
* Update script
* Add support for SFI groups
* Update plot
* Update script
* Update script
2024-03-26 15:11:04 +01:00
Richard Stiskalek
27c1f9249b
Observer velocity script ( #120 )
...
* Rename script
* Delete scripts
* Add script
* Edit script
* Add script
* Update nb
* Update plotting
* Update .gitignore
* Update nb
* Update nb
* Add option to keep beta fixed
2024-03-26 10:42:53 +01:00
Richard Stiskalek
4093186f9a
Add z_obs output ( #119 )
...
* Update SN model to output zobs too
* Add TF predicted zobs
* Add imoprt
* Update nb
* Calculate chi2
* Update nb
* Update script
2024-03-22 18:10:40 +01:00
Richard Stiskalek
f7285b2600
More flow ( #118 )
...
* Add GoF calculation
* Add import
* Add base flow
* Add reading of ndata
* Update nb
* Update plotting
* Update script
* Update plots
* Updaet plo
* Add script
* Update nb
* Update nb
* Update script
* Update script
* Update nb
* Remove imports
* Improve labelling
* Improve flow calibration
* Add bulk flow plots
* Update flow
* Update scrit
* Calculate more radial steps
* Update bulk
* Update script
* Update nb
2024-03-21 16:50:37 +01:00
rstiskalek
a9cb8943d6
Update script
2024-03-19 14:36:09 +00:00
Richard Stiskalek
0a859a9a06
Write particles to ASCII ( #117 )
...
* Add option to output high-resolution particles only
* Add ASCII writing of simulatios
2024-03-19 09:23:52 +01:00
Richard Stiskalek
d0266584fa
CSiBORG2 subhalo catalogue ( #116 )
...
* Add import
* Add CSiBORG2 subfind catalogue
* Add parent mass
* Update nb
2024-03-18 16:37:58 +01:00
rstiskalek
0f94457b7f
Update nb
2024-03-16 17:16:22 +00:00
rstiskalek
0d1c262df0
Merge branch 'master' of github.com:Richard-Sti/csiborgtools
2024-03-16 17:14:03 +00:00
Richard Stiskalek
fb4abebeb6
Add more flow modelling ( #115 )
...
* Add SN calibration model
* Update imports
* Scale Carrick field
* Minor updates to flow validation
* Update script
* Update flow model
* Add CSiBORG2
* Add CSiboRG2 params
* Update imports
* Add regular grid interpolator to LOS
* Add nb
* Remove old code
* Update scripts
* Minor updates
* Minor updates
* Add TF
* Minor update
* Update notebook
* Update imports
* Add scan and loss of numpyro
* Add Pantheon
* Update svript
* Updaten b
* Add model loader
* Add jackknife
* Add evidence
* Update dr
* Add BIC to the flow model
* Update srcipt
* Update nb
* Update nb
* Update scripts
2024-03-16 17:02:00 +00:00
rstiskalek
180c2559fe
Update script
2024-03-10 11:22:35 +00:00
rstiskalek
ba2baa0081
Minor updates to flow validation
2024-03-10 11:22:29 +00:00
rstiskalek
9a3e937afd
Scale Carrick field
2024-03-10 11:20:11 +00:00
rstiskalek
5cbcdf96dd
Update imports
2024-03-10 11:19:47 +00:00
rstiskalek
088b15429b
Add SN calibration model
2024-03-10 11:19:13 +00:00
rstiskalek
b503a6f003
Add new notebook
2024-03-08 14:46:38 +00:00
rstiskalek
95af8db8e7
Delete old notebooks
2024-03-08 14:46:34 +00:00
Richard Stiskalek
a65e3cb15b
Add simple distance flow model ( #114 )
...
* Add imports
* Add field LOS paths
* Add basic flow model
* Edit script
* Add nb
* Add nb
* Update nb
* Add some docs
* Add RA reading
* Add imoprts
* Updates to the flow model
* Update script
* Bring back A2
* Update imports
* Update imports
* Add Carrick to ICs
* Add Carrick boxsize
* Add Carrick and fix minor bugs
* Add Carrick box
* Update script
* Edit imports
* Add fixed flow!
* Update omega_m and add it
* Update nb
* Update nb
* Update nb
* Remove old print statements
* Update params
* Add thinning of chains
* Add import
* Add flow validation script
* Add submit script
* Add ksmooth
* Update nb
* Update params
* Update script
* Update string
* Move where distributions are defined
* Add density bias parameter
* Add lognorm mean
* Update scripts
* Update script
2024-03-08 10:44:19 +00:00
Richard Stiskalek
fb93f85543
Make sure dumpfolder created only on rank 0
2024-02-27 13:28:41 +00:00
Richard Stiskalek
66d9f46919
Evaluate LOS distances ( #113 )
...
* Add field_los
* fix typo
* add fix bug
* bug fixes
* Add docs
* Add more docs
2024-02-27 12:40:52 +00:00
Richard Stiskalek
fc51f75e16
Add field interpolation along LOS ( #112 )
...
* Add attemtp
* Add import
* Update LOS code
* Add better docstrings
* Update nb
2024-02-26 15:02:48 +00:00
Richard Stiskalek
f61429be43
Add SPH paths ( #111 )
...
* Add path to CSiBORG1
* Update nb
2024-02-26 12:56:58 +00:00
Richard Stiskalek
1c736aaede
Density field tests ( #110 )
...
* Add imports
* Remove file
* Add boxsize argument
* Add script
* Update script
* Edit script
* Add nbs
2024-02-26 12:36:29 +00:00
Richard Stiskalek
b88c0703f6
SPH for CSiBORG1 support ( #109 )
...
* Add edited files
* Update scripts
* Updates
* Little fix
* Little ifx
2024-02-20 12:24:58 +00:00
Richard Stiskalek
f0ab6fc9b4
Add TNG field ( #108 )
...
* Add TNG catalogue script
* Add imoprt
* Add TNG box
* Add import
* Fix little bug
* Add TNG300-1
* Add shell scripts
* Organize .gitignore
* Add scatter to file name
* Add argument scatter
* Add threshold on mass
* Update nb
* Add scatter argument
* Add scattering of radial positions
* Update nb
* Update script
2024-02-07 09:11:49 +00:00
Richard Stiskalek
9e4b34f579
Overlap fixing and more ( #107 )
...
* Update README
* Update density field reader
* Update name of SDSSxALFAFA
* Fix quick bug
* Add little fixes
* Update README
* Put back fit_init
* Add paths to initial snapshots
* Add export
* Remove some choices
* Edit README
* Add Jens' comments
* Organize imports
* Rename snapshot
* Add additional print statement
* Add paths to initial snapshots
* Add masses to the initial files
* Add normalization
* Edit README
* Update README
* Fix bug in CSiBORG1 so that does not read fof_00001
* Edit README
* Edit README
* Overwrite comments
* Add paths to init lag
* Fix Quijote path
* Add lagpatch
* Edit submits
* Update README
* Fix numpy int problem
* Update README
* Add a flag to keep the snapshots open when fitting
* Add a flag to keep snapshots open
* Comment out some path issue
* Keep snapshots open
* Access directly snasphot
* Add lagpatch for CSiBORG2
* Add treatment of x-z coordinates flipping
* Add radial velocity field loader
* Update README
* Add lagpatch to Quijote
* Fix typo
* Add setter
* Fix typo
* Update README
* Add output halo cat as ASCII
* Add import
* Add halo plot
* Update README
* Add evaluating field at radial distanfe
* Add field shell evaluation
* Add enclosed mass computation
* Add BORG2 import
* Add BORG boxsize
* Add BORG paths
* Edit run
* Add BORG2 overdensity field
* Add bulk flow clauclation
* Update README
* Add new plots
* Add nbs
* Edit paper
* Update plotting
* Fix overlap paths to contain simname
* Add normalization of positions
* Add default paths to CSiBORG1
* Add overlap path simname
* Fix little things
* Add CSiBORG2 catalogue
* Update README
* Add import
* Add TNG density field constructor
* Add TNG density
* Add draft of calculating BORG ACL
* Fix bug
* Add ACL of enclosed density
* Add nmean acl
* Add galaxy bias calculation
* Add BORG acl notebook
* Add enclosed mass calculation
* Add TNG300-1 dir
* Add TNG300 and BORG1 dir
* Update nb
2024-01-30 16:14:07 +00:00
rstiskalek
0984191dc8
Fix overload I/O system
2024-01-08 16:08:43 +00:00
rstiskalek
b49cc9ebee
Update README
2024-01-08 14:56:59 +00:00
Richard Stiskalek
1dfc11e462
Scripts for CSiBORG1 SPH calculation ( #106 )
...
* Rename files
* Delet efile
* Add new submission script
* Update README
* Add submit script
* Renaming file
* Correct typos
* Update README
* Add all nsims
2024-01-08 15:43:01 +01:00
rstiskalek
655f7a733c
Update README
2024-01-08 12:59:43 +00:00
