Richard Stiskalek
153f1c0002
Overlap reader thresholds ( #31 )
...
* Improve data
* Add comment
* Update how KNN is called
* Bring back indices
* New function output
* return catx["index"]
* Remove unnecessary arguments
* Remove useless arguments
* Rename output
* thin up catalogues
* Add thresholding
* Update README
2023-03-15 20:55:50 +00:00
Richard Stiskalek
6e290ccfb4
Add support for inverting the reader ( #30 )
2023-03-09 21:54:13 +00:00
Richard Stiskalek
f2cef73977
Final overlap definition update.. ( #29 )
...
* Delete whitespace
* Update overlap definition
* Add documentation
* add overlap args
* Make the background array store only high density region
* Add nsims to args
* Remove conc as done inside the func
* Simplify the overlap calculation
* Rename variable
* Just some docs
* Docs
* Correct overlap definition
* Undo debug comment
* Remove old debug code
* Add prob of no match and exp couunterpart mass
* docs
* Update the overlap definition
2023-03-09 14:55:38 +00:00
Richard Stiskalek
1c859dbdac
Overlap reader ( #28 )
...
* Edit output path
* remove matching of many sims
* Add a class skeleton
* Add a setter for only nsim
* Deletei mport
* Simplify cross and delete combined halo catalogue
* Simplify reading in catalogues
* Add distance calculation
* Add mass ratio
* Clean up the submission script
* Add the summer overlap
* Docs
* Add array copying
* Add import
* Add resampling mean
2023-02-08 12:05:32 +00:00
Richard Stiskalek
8dea3da4de
Speed up overlap ( #27 )
...
* Edit improt
* Simplify patch size calculation
* Add patch size percentiles
* Add various percentiles
* Remove comment
* Update TODO
* Change to 95th percentile
* Add import
* Add KNN properties
* Add new matching initial condition
* Add import
* Remove import
* Add fast neighbours option
* Further edits to fast neighbours
* add imports
* add new overlap calculation and non-zero things
* Remove print
* Clean up code
* Fix small bug
* Remove comment
* Add run single cross match
* change values
* Edit hyperparams
* Add comment
* Add the argument parser
* Add new lagpatch calc
* New lagpatch calc
* Delete old patch definitions
* Make clump dumping once again optional
* Add lagpatch to the catalogue
* Edit print statement
* Fix small bug
* Remove init radius
* Change to lagpatch key
* Fix a small bug
* Fix little bug
2023-02-05 11:46:19 +00:00
Richard Stiskalek
beb811e84c
Switch initial radius definition ( #26 )
...
* Add search for neighbours at z = 0
* Add initial snapshot KNN
* Add initi search either z =0 or z = 70
* Add import
* Add clumps_pos2cell
* Add function argument
* Add import
* Add spherical overlap and speed up make_delta
* Add clump limits calculation
* Sped up make_delta
* Add patch size conversion
* Add patch sizes
* Add patch size calculation
* Force catalogues to be in float32
* Optimised script
* Option to remove points with no overlap
* Add spherical aproximate overlap
* Fix subboxing bug
* Remove print diagnostics
* Add Lagrangian patch size
* Add patch size documentation
* Move when clumpsx converted to int
* Edit docs
* Remove spherical overlap
* New Langrangian patch calculation
2023-01-31 15:09:35 +00:00
rstiskalek
912a38acfb
Merge branch 'master' of github.com:Richard-Sti/csiborgtools
2023-01-17 11:47:37 +00:00
Richard Stiskalek
3bdadc4750
Change file naming convention ( #25 )
2023-01-17 11:47:11 +00:00
rstiskalek
88a109157d
Change file naming convention
2023-01-17 11:46:07 +00:00
Richard Stiskalek
830b1b8daf
Fix weights definition ( #24 )
...
* Fix running script
* Increase outside boundary size
* Add new weight scheme
* Edit docs
2023-01-16 16:14:38 +00:00
Richard Stiskalek
279580e041
Fix overlap weights ( #23 )
...
* Remove overlapper change cells
* Remove Pylians MASL and replace with custom
* Add concatenate clumps
* Add weighted overlap
2023-01-14 14:34:37 +00:00
Richard Stiskalek
f0720243a2
Updates to the submission script ( #22 )
2023-01-01 21:43:52 +00:00
Richard Stiskalek
2e99b901ac
Environmental properties ( #20 )
...
* rm get_positions
* Add comment
* add halfwidth func
* Update docs
* Add imprt
* Evaluate multiple fields simulatenously
* add halfwidth selection
* Change order of grav field and tensor field
* Add gravitational field norm
* Add eigenvalue calculation
* Sorted eigenvalues
* add init script
* add progress
* Add surveys
* Add more survey flexibility
* Minor changes
* add survey names
* rm name
* Fix list bug
* Fig bugs when running the script
* add phi to dtype
* fix dump bug
* Add comment
* Add smoothing options
* Add further comment
* Update TODO
2022-12-31 17:46:05 +00:00
rstiskalek
65059f3798
Update TODO
2022-12-27 17:33:07 +00:00
Richard Stiskalek
3dc559fec1
Overlap calculation ( #19 )
...
* Rm comment
* Add new fixed particle overlap
* Fix overlap calculation
* Update docs
* Add new overlapper support in matcher
* add filter optin
* Add the real space filter.
* Change filtering to real space only
* Update TODO
* add high-resolution switch
* add cross script
* Remove comment
* Add smoothing option
2022-12-27 18:32:12 +01:00
rstiskalek
1edb566792
Update TODO
2022-12-20 12:11:18 +00:00
Richard Stiskalek
18f09767f4
Overlap calculation ( #18 )
...
* Move cosine similarity out
* Basic overlap calculation
* add overlap import
* Add clump0 dict path
* Update README
* fix path bug
* Save as dict instead
* Change format to array of arrays
* Update paths
* Take fewer ICs for now
* Change to structured array
* Add overlap calculation
* Start saving IDs
* Add a blank space
* Update TODO
2022-12-19 11:58:22 +01:00
Richard Stiskalek
13a9d11afe
Particle init CM separation ( #17 )
...
* Rename
* rename module
* add new_ic_ids
* Add to_new support
* rm unnecessary comment
* Remove JUlia!
* add new package attempt
* add dump script
* simplify positions getter
* Remove unused code
* change dumpdirs
* update project
* Add sorting
* fix indexing bug
* add comment
* Add particle dumping
* Delete blank line
* Delete Julia things
* Update README
* add working script
* fix assignment bug
* fix bug
* save temp to temp folder
* fix indexing bug & path
* do not always crreate folder
* Rename file
* add initcm reader
* add x0, y0, z0 transforms
* add initcm to halo cat
* docs update
* add initial KNN
* add attempt at init match
* add initial fiducial radius
* rm blank space
* Add further KNN Init pos support
* Add init radius support
* Remove message about the bug
* Get rid of an error msg
* purge mention of knn_init
* Add init CM distance calc
2022-12-16 11:18:16 +01:00
Richard Stiskalek
c3c686fa60
Power spectrum stuff ( #16 )
...
* add autok1d
* update TODO
* add basic cross pk
* del blank line
* fix small bugs
* fix loop bug
* rm nbs
* edit docstring
* Update TODO
* get rid of verbose flag
* take all ICs
* attempt better memory
* simplify ASCII dump
* rm verbose statement to get rid of bugs!
* close fortran files
* add MAS options
* add boxsize setter
* Move comment up
* paths chagne
* Update TODO
* Update TODO
* Forgotten units in Xpk
* Attempt at fixing the distance bug
* Update TODO
* Update TODO
* Remove comment
* add summary reader
* Update gitignore
2022-12-12 14:42:44 +00:00
Richard Stiskalek
1bb4255874
SDSS galaxies and catalogs rework ( #15 )
...
* add SDSS skeleton
* rm nb
* update gitignore
* add docs
* add survey volume
* add masking
* add SDSS mask
* add SDSS comments
* add reference
* rm
* move planck to fits clusters
* Rm comment
* update masking routines
* rm masks
* Update docs
* rm data
* make MCXC fits surv
* change MCXC name
* Move to extrasapce
* Update paths
2022-12-05 11:36:41 +00:00
Richard Stiskalek
91beb4df50
Angular momentum ( #14 )
...
* add ang mom
* Update TODO
* add ascii dump script
* add comment
* Updating TODO
* add angmom
* add garbage collector
2022-11-30 16:12:39 +00:00
rstiskalek
92699bfb0a
update TODO
2022-11-30 13:42:00 +00:00
rstiskalek
5435781e8d
add the grav field
2022-11-30 13:41:35 +00:00
Richard Stiskalek
6aa3721c83
Potential ( #13 )
...
* add basic density field
* Add TODO
* add field smoothing
* update how pos are calculated
* add transforms both ways
* add import
* add sky density
* add make skymap func
* update TODO
* update gitignore
* add potential field calculation
* delete boxsize setter
* add tidal tensor
2022-11-27 07:53:38 +00:00
rstiskalek
ea73dfcd56
Update TODO
2022-11-25 16:46:28 +00:00
rstiskalek
2a5d6a03b6
add distance cut
2022-11-25 16:45:27 +00:00
rstiskalek
d8adf56614
edit TODO
2022-11-25 15:07:53 +00:00
Richard Stiskalek
ca45fbd5d9
add ascii writing ( #12 )
2022-11-25 15:06:10 +00:00
rstiskalek
469f4988fa
update TODO
2022-11-25 12:45:47 +00:00
rstiskalek
4e87a96b97
fix bug(again)
2022-11-25 12:42:49 +00:00
rstiskalek
8d68f35cf9
swithc to own G
2022-11-25 12:28:46 +00:00
rstiskalek
a3c7d03ceb
fix bug
2022-11-25 12:28:41 +00:00
rstiskalek
377d6ebb7e
add lambda200c support
2022-11-25 12:24:06 +00:00
rstiskalek
69d1f28fcc
add lambda200c calc
2022-11-25 12:23:43 +00:00
rstiskalek
e5208ed070
add note
2022-11-25 11:52:31 +00:00
rstiskalek
91bddb1d3a
remove not good comments
2022-11-25 11:45:47 +00:00
rstiskalek
9fe745b0b4
add center of mass
2022-11-25 10:54:09 +00:00
Richard Stiskalek
161c27d995
Particle match & file system & phase space ( #11 )
...
* Create file system
* add doc
* add n_sim n_snap directly to paths
* Move things to a single particle reader for consistency
* add docstring
* add srdcir, dumpdir and mmain_path
* make boxunits work with paths
* switch to using paths
* add tempdumpdir
* rm dependence on old functions
* rm comment
* rm unused import
* go back to all imports
* fix import bug
* rm dependence on old functions
* modernize code!
* fix typo
* fix typo
* update fits to new data structureing
* change docs
* add julia repo
* add setup
* add install commands
* ignore install files
* add array flattening
* update dependene
* add positions reader
* update manifest and projects
* add func
* update gitignore
* pos matching progress
* move file
* rm comment
* add velocities getter
* fix bug
* fix name bug
* fix path bug
* fix args func
* add redshift calculation to catalogues
* add shortcut to set n_sim and n_snap
* if cond bug
* add the cosine similarity
* add verbosit iterator
* add docs
* update README
* update README
* update README
2022-11-25 10:44:08 +00:00
Richard Stiskalek
c748c87e45
New filesystem, basic neighbours calculation ( #10 )
...
* simplify Planck catalogue
* add MCXC and base survey
* Add 2MPP classes
* move match to MCXC to Planck
* add halo catalogue
* rm comment
* rm unused imports
* Move conversion to box
* add min mass
* Run on all simulations
* rm old function
* add combined catalogue
* add halo positions
* add knn neighbors
* set to 5 sims for testing
* add docstring
* Switch to neighbours in a catalogue
* rename io to read
* fix indentation
* rename to read
* io -> read
* add import
* add RealisationMatcher
* io -> read
* add docstrings
* add search_sim_indiices
* update todo
* keep make_cat at 10 for now
* update nb
2022-11-22 10:00:01 +00:00
rstiskalek
f5bf04c46e
update nb
2022-11-20 14:11:35 +00:00
rstiskalek
6a9db75549
add pec redshift
2022-11-20 14:11:32 +00:00
rstiskalek
3352b06c1c
add units
2022-11-20 14:11:25 +00:00
rstiskalek
1d9789c08e
add vx
2022-11-20 14:11:19 +00:00
rstiskalek
1037aa4db9
add velocity conversion
2022-11-18 10:53:06 +00:00
rstiskalek
858a153fad
add box2cosmoredshift
2022-11-18 10:44:41 +00:00
rstiskalek
06d3fede95
add max snapshot
2022-11-14 16:24:53 +00:00
rstiskalek
f33bf0c3b2
add the maximum snapshot
2022-11-14 16:22:45 +00:00
rstiskalek
76349bab3f
add MPI and do for all boxes
2022-11-14 15:52:52 +00:00
Richard Stiskalek
17badf2652
X-ray data ( #9 )
...
* add xray reading
* add import
* add more comments
* add data
* add nb
* add MCXC shortcut
* add match indxs to Planck of MCXC
* add import
* update TODO
* update readme
* add famous clusters
* add 2mpp_groups
* shorten paths
* add 2M++ groups
* add import
* Update TODO
2022-11-10 07:40:44 +00:00
rstiskalek
f69def9878
Merge branch 'master' of https://github.com/Richard-Sti/galomatch
2022-11-06 21:02:57 +00:00
