Richard Stiskalek
8e9645e202
Add p(z_cosmo | z_obs) ( #122 )
...
* Add import
* Add draft of the p(zcosmo)
* Add option for additional uncertainty
* Variable renaming
* Add zcosmo predict for flow calibration
* Add flow map notebook
* Update notebook
* Add posterior mean & std
* Edit docstring
2024-04-01 15:44:20 +02:00
rstiskalek
e3a645c935
Update nb
2024-03-28 12:23:52 +00:00
Richard Stiskalek
29b37172fa
Add SFI groups ( #121 )
...
* Update LOS sampling
* Bring SD back to speed
* Update nb
* Update script
* Update requirements
* Update flow chi2 calc
* Update script
* Add support for SFI groups
* Update plot
* Update script
* Update script
2024-03-26 15:11:04 +01:00
Richard Stiskalek
27c1f9249b
Observer velocity script ( #120 )
...
* Rename script
* Delete scripts
* Add script
* Edit script
* Add script
* Update nb
* Update plotting
* Update .gitignore
* Update nb
* Update nb
* Add option to keep beta fixed
2024-03-26 10:42:53 +01:00
Richard Stiskalek
4093186f9a
Add z_obs output ( #119 )
...
* Update SN model to output zobs too
* Add TF predicted zobs
* Add imoprt
* Update nb
* Calculate chi2
* Update nb
* Update script
2024-03-22 18:10:40 +01:00
Richard Stiskalek
f7285b2600
More flow ( #118 )
...
* Add GoF calculation
* Add import
* Add base flow
* Add reading of ndata
* Update nb
* Update plotting
* Update script
* Update plots
* Updaet plo
* Add script
* Update nb
* Update nb
* Update script
* Update script
* Update nb
* Remove imports
* Improve labelling
* Improve flow calibration
* Add bulk flow plots
* Update flow
* Update scrit
* Calculate more radial steps
* Update bulk
* Update script
* Update nb
2024-03-21 16:50:37 +01:00
rstiskalek
a9cb8943d6
Update script
2024-03-19 14:36:09 +00:00
Richard Stiskalek
0a859a9a06
Write particles to ASCII ( #117 )
...
* Add option to output high-resolution particles only
* Add ASCII writing of simulatios
2024-03-19 09:23:52 +01:00
Richard Stiskalek
d0266584fa
CSiBORG2 subhalo catalogue ( #116 )
...
* Add import
* Add CSiBORG2 subfind catalogue
* Add parent mass
* Update nb
2024-03-18 16:37:58 +01:00
rstiskalek
0f94457b7f
Update nb
2024-03-16 17:16:22 +00:00
rstiskalek
0d1c262df0
Merge branch 'master' of github.com:Richard-Sti/csiborgtools
2024-03-16 17:14:03 +00:00
Richard Stiskalek
fb4abebeb6
Add more flow modelling ( #115 )
...
* Add SN calibration model
* Update imports
* Scale Carrick field
* Minor updates to flow validation
* Update script
* Update flow model
* Add CSiBORG2
* Add CSiboRG2 params
* Update imports
* Add regular grid interpolator to LOS
* Add nb
* Remove old code
* Update scripts
* Minor updates
* Minor updates
* Add TF
* Minor update
* Update notebook
* Update imports
* Add scan and loss of numpyro
* Add Pantheon
* Update svript
* Updaten b
* Add model loader
* Add jackknife
* Add evidence
* Update dr
* Add BIC to the flow model
* Update srcipt
* Update nb
* Update nb
* Update scripts
2024-03-16 17:02:00 +00:00
rstiskalek
180c2559fe
Update script
2024-03-10 11:22:35 +00:00
rstiskalek
ba2baa0081
Minor updates to flow validation
2024-03-10 11:22:29 +00:00
rstiskalek
9a3e937afd
Scale Carrick field
2024-03-10 11:20:11 +00:00
rstiskalek
5cbcdf96dd
Update imports
2024-03-10 11:19:47 +00:00
rstiskalek
088b15429b
Add SN calibration model
2024-03-10 11:19:13 +00:00
rstiskalek
b503a6f003
Add new notebook
2024-03-08 14:46:38 +00:00
rstiskalek
95af8db8e7
Delete old notebooks
2024-03-08 14:46:34 +00:00
Richard Stiskalek
a65e3cb15b
Add simple distance flow model ( #114 )
...
* Add imports
* Add field LOS paths
* Add basic flow model
* Edit script
* Add nb
* Add nb
* Update nb
* Add some docs
* Add RA reading
* Add imoprts
* Updates to the flow model
* Update script
* Bring back A2
* Update imports
* Update imports
* Add Carrick to ICs
* Add Carrick boxsize
* Add Carrick and fix minor bugs
* Add Carrick box
* Update script
* Edit imports
* Add fixed flow!
* Update omega_m and add it
* Update nb
* Update nb
* Update nb
* Remove old print statements
* Update params
* Add thinning of chains
* Add import
* Add flow validation script
* Add submit script
* Add ksmooth
* Update nb
* Update params
* Update script
* Update string
* Move where distributions are defined
* Add density bias parameter
* Add lognorm mean
* Update scripts
* Update script
2024-03-08 10:44:19 +00:00
Richard Stiskalek
fb93f85543
Make sure dumpfolder created only on rank 0
2024-02-27 13:28:41 +00:00
Richard Stiskalek
66d9f46919
Evaluate LOS distances ( #113 )
...
* Add field_los
* fix typo
* add fix bug
* bug fixes
* Add docs
* Add more docs
2024-02-27 12:40:52 +00:00
Richard Stiskalek
fc51f75e16
Add field interpolation along LOS ( #112 )
...
* Add attemtp
* Add import
* Update LOS code
* Add better docstrings
* Update nb
2024-02-26 15:02:48 +00:00
Richard Stiskalek
f61429be43
Add SPH paths ( #111 )
...
* Add path to CSiBORG1
* Update nb
2024-02-26 12:56:58 +00:00
Richard Stiskalek
1c736aaede
Density field tests ( #110 )
...
* Add imports
* Remove file
* Add boxsize argument
* Add script
* Update script
* Edit script
* Add nbs
2024-02-26 12:36:29 +00:00
Richard Stiskalek
b88c0703f6
SPH for CSiBORG1 support ( #109 )
...
* Add edited files
* Update scripts
* Updates
* Little fix
* Little ifx
2024-02-20 12:24:58 +00:00
Richard Stiskalek
f0ab6fc9b4
Add TNG field ( #108 )
...
* Add TNG catalogue script
* Add imoprt
* Add TNG box
* Add import
* Fix little bug
* Add TNG300-1
* Add shell scripts
* Organize .gitignore
* Add scatter to file name
* Add argument scatter
* Add threshold on mass
* Update nb
* Add scatter argument
* Add scattering of radial positions
* Update nb
* Update script
2024-02-07 09:11:49 +00:00
Richard Stiskalek
9e4b34f579
Overlap fixing and more ( #107 )
...
* Update README
* Update density field reader
* Update name of SDSSxALFAFA
* Fix quick bug
* Add little fixes
* Update README
* Put back fit_init
* Add paths to initial snapshots
* Add export
* Remove some choices
* Edit README
* Add Jens' comments
* Organize imports
* Rename snapshot
* Add additional print statement
* Add paths to initial snapshots
* Add masses to the initial files
* Add normalization
* Edit README
* Update README
* Fix bug in CSiBORG1 so that does not read fof_00001
* Edit README
* Edit README
* Overwrite comments
* Add paths to init lag
* Fix Quijote path
* Add lagpatch
* Edit submits
* Update README
* Fix numpy int problem
* Update README
* Add a flag to keep the snapshots open when fitting
* Add a flag to keep snapshots open
* Comment out some path issue
* Keep snapshots open
* Access directly snasphot
* Add lagpatch for CSiBORG2
* Add treatment of x-z coordinates flipping
* Add radial velocity field loader
* Update README
* Add lagpatch to Quijote
* Fix typo
* Add setter
* Fix typo
* Update README
* Add output halo cat as ASCII
* Add import
* Add halo plot
* Update README
* Add evaluating field at radial distanfe
* Add field shell evaluation
* Add enclosed mass computation
* Add BORG2 import
* Add BORG boxsize
* Add BORG paths
* Edit run
* Add BORG2 overdensity field
* Add bulk flow clauclation
* Update README
* Add new plots
* Add nbs
* Edit paper
* Update plotting
* Fix overlap paths to contain simname
* Add normalization of positions
* Add default paths to CSiBORG1
* Add overlap path simname
* Fix little things
* Add CSiBORG2 catalogue
* Update README
* Add import
* Add TNG density field constructor
* Add TNG density
* Add draft of calculating BORG ACL
* Fix bug
* Add ACL of enclosed density
* Add nmean acl
* Add galaxy bias calculation
* Add BORG acl notebook
* Add enclosed mass calculation
* Add TNG300-1 dir
* Add TNG300 and BORG1 dir
* Update nb
2024-01-30 16:14:07 +00:00
rstiskalek
0984191dc8
Fix overload I/O system
2024-01-08 16:08:43 +00:00
rstiskalek
b49cc9ebee
Update README
2024-01-08 14:56:59 +00:00
Richard Stiskalek
1dfc11e462
Scripts for CSiBORG1 SPH calculation ( #106 )
...
* Rename files
* Delet efile
* Add new submission script
* Update README
* Add submit script
* Renaming file
* Correct typos
* Update README
* Add all nsims
2024-01-08 15:43:01 +01:00
rstiskalek
655f7a733c
Update README
2024-01-08 12:59:43 +00:00
Richard Stiskalek
1a5477805a
Update evaluate density scripts ( #105 )
...
* Edit docs
* Updated interpolated field paths
* Update field sampling script
* Add comments about flipping fields
* Fix little typo
* Edit docs
* Edit hard-coded values
* Fix paths issue
* Add docs
* Switch uncorrected dist to corrected
* Improve error message
* Convert numpy int to Python int
* Add flip of x and z
* Update README
* Edit README
* Fix bug in velocity field calculation
* Fix simple bug
* Add checked axes flipping
* Fix field units
* Update README
2024-01-08 13:56:22 +01:00
Richard Stiskalek
f61f69dfab
Read merger branch ( #104 )
...
* Add support to read merger tree main branch
* Add imports
* Add trees path
* Edit processing
2024-01-04 17:56:49 +01:00
Richard Stiskalek
78443e30b5
Fix reading varysmall ( #103 )
...
* Fix paths
* Add new chains options
* Remove old imports
2023-12-22 21:46:41 +01:00
Richard Stiskalek
b4a29aea85
Add correlation module to field ( #102 )
...
* Remove file
* Add boostrap corr as a module
2023-12-22 11:21:52 +01:00
rstiskalek
d04ae6b327
Remove olf file
2023-12-21 18:35:46 +00:00
rstiskalek
119d09e26e
Update file
2023-12-21 18:35:07 +00:00
Richard Stiskalek
a08109b997
Add snapshots optionally directly to catalogue ( #101 )
...
* Add isinstance check
* Add snapshot to cat
* Rename mass_kind to mass_key
* Remove import
* Fix compatiblility
* Remove old export
* Rename import
* Fix calling
* Remove paths dependence
* Update match script
* Add check if halo has no particles
2023-12-20 16:28:26 +01:00
Richard Stiskalek
7d5141cf7f
Add comments
2023-12-20 15:19:51 +01:00
Richard Stiskalek
279022d036
Preparing RAMSES for SPH. ( #100 )
...
* Remove unused import
* Draft of preparing for SPH
* Edit script
2023-12-20 11:40:47 +01:00
Richard Stiskalek
b8863a903e
Sorting of CSiBORG2 initial snapshot ( #99 )
...
* Attempt at the sorting script
* Fix bug in CSiBORG2 sorting
* and check sstatement
* Simplify paths
* Improve paths too
* Update .gitignroe
* Just rewrite commands..
2023-12-20 11:00:26 +01:00
Richard Stiskalek
7dfc7514d2
Fix catalogues and add CSiBORG 2 catalogue support ( #98 )
...
* Add box selection to snapshot
* Edit imports
* Rename catalogue
* Add beautified catalogues
* Fix paths issue
* Create params to avoid circular import
* Add CSiBORG2 catalogue support
* Remove print statement
* Edit docs
2023-12-19 13:08:09 +01:00
Richard Stiskalek
eb1797e8a9
Clean density calculation ( #97 )
...
* Get rid of utils
* Clean up imports
* Move some utils here
* Rename file
* Add simname to boxsize
* Add imports
* Delete old files
* Update README
* Update imports
* Add a new draft of the density calculator
* Update fields
* Draft of new density field calculatiosn
* Add snapshot
* Add boxsizes
* Little updates
* Bring back utils
* Edit docstrings
* Edits imports
* Add progress on snapshots
* edit improts
* add basic snapshot catalogue
* Add support for CSiBORG2 snapshot reader
* add paths to fofcat for csiborg2
* Add more imports
* Add more boxsize
* Add more imports
* Add field readers
* Simplify field paths
* Fix typo
* Add observer vp
* Clean up density field calculation
* Add a short note
* Edit args
* Remove old comments
* Edit docs
* Remove blank line
* Stop flipping RAMSES
* Remove comment
* Edit desc
* Remove normalization
* Remove old dist array
* Remove non-volume weighting
* Remove non-volume weight
* Add ignore of flake8 notebooks
* Fix path typo
* Fix units
* Edit paths docs
* Update nb
2023-12-18 18:09:08 +01:00
Richard Stiskalek
eeff8f0ab9
Remove files that are not meant to be tracked..
2023-12-14 00:41:28 +00:00
Richard Stiskalek
41c22e2166
Improve observer peculiar velocity ( #96 )
...
* Fix peculiar velocity cacl
* Move files
* Remove import
2023-12-14 00:40:07 +00:00
rstiskalek
832d943fe7
Update not
2023-12-13 20:48:55 +00:00
rstiskalek
723ea0a38b
Update README
2023-12-13 20:43:28 +00:00
rstiskalek
2be20f763b
Add matching to no selection
2023-12-13 20:42:58 +00:00
Richard Stiskalek
506d7a7c70
Fix paths ( #95 )
...
* Fix args
* Fix paths
* Get rid of quijote backup
2023-12-13 18:03:27 +00:00
