Richard Stiskalek
d32eb5c134
Data loading shortcut ( #7 )
...
* add load_processed
* update TODO
2022-11-06 10:26:24 +00:00
rstiskalek
364f3b2137
rm blank
2022-11-06 10:06:48 +00:00
rstiskalek
859e3f4eb2
change density to mass/mpc^3
2022-11-06 10:06:40 +00:00
rstiskalek
5fa429ceb0
Update TODO
2022-11-06 09:11:21 +00:00
rstiskalek
91ad3166f8
Update TODO
2022-11-06 09:07:27 +00:00
rstiskalek
0baa81a4f4
centre coords at 0
2022-11-06 09:06:03 +00:00
rstiskalek
1cd3f10848
add num density
2022-11-06 09:05:51 +00:00
rstiskalek
3979650663
add boxunits transform on array
2022-11-06 06:32:28 +00:00
Richard Stiskalek
7f58b1f78c
JAX and fix conc ( #6 )
...
* change to log10 initlogRs
* add uncertainty
* add check if hessian negative
* update TODO
* update TODO
* output the error too
* save e_logRs
* add concentration calculation
* calcul concentration
* missed comma in a list
* Update TODO
* fix bug
* add box units and pretty status
* make uncertainty optional
* add BIC function
* remove BIC again
* add new overdensity calculation
* change defualt values to max dist and mass
* change to r200
* new halo find
* speed up the calculation
* add commented fucn
* update TODO
* add check whether too close to outside boundary
* Update TODO
* extract velocity as well
* calculate m200 and m500
* update nb
* update TODO
2022-11-05 21:17:05 +00:00
rstiskalek
ee84c12a55
Merge branch 'master' of https://github.com/Richard-Sti/galomatch
2022-11-01 10:11:14 +00:00
Richard Stiskalek
ba98ecc299
Mass enclosed in a sphere calculation ( #5 )
...
* rename nb
* add merge func
* rm bug..
* add static methods
* save rmin, rmax
* add properties for box units
* move radial info to the clump
* add Npart explicit
* move where rmin, rmax obtained
* add box cosmo
* add __getattr__
* add comments in units
* add enclosed spherical mass
* rm unused variables
* add clump mass setter
* add the halo index
* add enclosed overdensity
* add enclosed_overdensity
* simplify loss func
* opt result to nan
* change Rs to log10
* change back to attribs
* add H0 and h props
* add setattrs
* Remove global constants
* move Msuncgs above
* add crit density
* add dots
* add r200c and r500c
* add M200 and M500
* make lowercase
* output r200, r500, m200, m500
* update TODO
* update README
* fit NFW only up to r200
* add r178, m178
* add m178, r178
* update TODO
2022-11-01 10:10:54 +00:00
rstiskalek
865077c3c2
rename nb
2022-10-31 16:47:24 +00:00
rstiskalek
88e2132232
update README
2022-10-30 20:23:35 +00:00
rstiskalek
09ce7b4b5e
Update TODO
2022-10-30 20:21:48 +00:00
Richard Stiskalek
8a56c22813
Within halo work and NFW fit ( #4 )
...
* add listing of snapshots
* change distance to comoving
* ignore cp files
* rename nb
* add str to list
* add NFW profile shapes
* add fits imports
* Rename to Nsnap
* in clumps_read only select props
* make clumpid int
* expand doc
* add import
* edit readme
* distribute halos
* add profile & posterior
* add import
* add import
* add documentation
* add rvs and init guess
* update todo
* update nb
* add file
* return end index too
* change clump_ids format to int32
* skeleton of dump particle
* update nb
* add func to drop 0 clump indxs parts
* add import
* add halo dump
* switch to float32
* Update TODO
* update TODO
* add func that loads a split
* add halo object
* Rename to clump
* make post work with a clump
* add optimiser
* add Nsplits
* ignore submission scripts
* ignore .out
* add dumppath
* add job splitting
* add split halos script
* rename file
* renaem files
* rm file
* rename imports
* edit desc
* add pick clump
* add number of particles
* update TODO
* update todo
* add script
* add dumping
* change dumpdir structure
* change dumpdir
* add import
* Remove tqdm
* Increase the number of splits
* rm shuffle option
* Change to remove split
* add emojis
* fix part counts in splits
* change num of splits
* rm with particle cut
* keep splits
* fit only if 10 part and more
* add min distance
* rm warning about not set vels
* update TODO
* calculate rho0 too
* add results collection
* add import
* add func to combine splits
* update TODO
* add extract cols
* update nb
* update TODO
2022-10-30 20:16:56 +00:00
rstiskalek
85a6a6d58a
comment out correlation import
2022-10-21 20:00:30 +01:00
rstiskalek
ba15264eb8
Add docs
2022-10-21 19:58:59 +01:00
rstiskalek
dd34036219
rename
2022-10-21 17:06:29 +01:00
rstiskalek
cef4ad1ae8
Merge branch 'master' of https://github.com/Richard-Sti/galomatch
2022-10-20 23:37:36 +01:00
rstiskalek
a47847cb7c
more renaming
2022-10-20 23:37:33 +01:00
rstiskalek
a9e98f5a2d
Rename repo
2022-10-20 23:34:14 +01:00
Richard Stiskalek
0a73256fe3
Update README.md
2022-10-20 23:31:19 +01:00
Richard Stiskalek
942c36b142
Box units conversion ( #3 )
...
* linting
* fix long line
* rename nb
* rename import
* add group catalog
* move imports out of functions
* add array_to_structured
* add references
* fix subsampling
* fix coord bug
* add 2M++ dists
* save nb
* fix comment
* add snapshot path
* add snapshot path
* add read_info
* Move transforms
* add import radec
* expand docs
* Move flipcols
* update nb
* add flip_cols
* create file
* add blank line
* Move units transfs
* add blank line
* add units import
* rm imports
* add import
* add box_units
* add comments
2022-10-20 23:28:44 +01:00
rstiskalek
c7665b8136
linting
2022-10-20 08:15:34 +01:00
rstiskalek
26c9946977
comments
2022-10-20 08:13:26 +01:00
rstiskalek
b7b4353487
ignore settings
2022-10-20 08:13:09 +01:00
Richard Stiskalek
c7801dc100
Update README.md
2022-10-20 07:28:07 +01:00
Richard Stiskalek
53a0629d90
Basic matching ( #2 )
...
* add recarray manipulations
* add cart to radec
* add behav so x can be a list
* add import
* create empty files
* ignore plots file
* add planck data
* add read_mmain file
* add cols_to_structured import
* use cols_to_structured
* add cols_to_structued
* add read_mmain import
* add reading planck
* add mass conversion
* add brute force separation calculation
* update nb
* rename & int dtype
* add func to get csiborg ids
* add list to nd array conversion
* add utils
* rename file
* add 2M++
* add read 2mpp
* add 2mpp shortcut
* add randoms generator
* Change range of RA [0, 360]
* fix ang wrapping
* add code for sphere 2pcf
* rm wrapping
* optionally load only a few borgs
* update nb
2022-10-18 19:41:20 +01:00
rstiskalek
d2c1f3294a
zero centre by default
2022-10-12 12:06:03 +01:00
rstiskalek
b3c7d687b7
add columns flip
2022-10-12 11:47:11 +01:00
rstiskalek
e97609da05
add .gitattrib
2022-10-11 16:43:18 +01:00
Richard Stiskalek
7b3f6a3114
Merge pull request #1 from Richard-Sti/basics
...
Basic IO
2022-10-11 16:35:54 +01:00
rstiskalek
4d24895d2f
update nb
2022-10-11 16:35:21 +01:00
rstiskalek
1e169d1424
add little h conversion
2022-10-11 16:32:23 +01:00
rstiskalek
7dada67492
add licencee
2022-10-11 16:24:51 +01:00
rstiskalek
c24842baf1
add mass and position conversions
2022-10-11 16:22:53 +01:00
rstiskalek
0876716719
add readclumps func
2022-10-11 16:00:04 +01:00
rstiskalek
07a7e41078
rename int dtype
2022-10-11 15:47:07 +01:00
rstiskalek
6183b9d6b9
add read clump ids
2022-10-11 15:32:03 +01:00
rstiskalek
edb9ee430c
ignore checkpoints
2022-10-11 13:47:26 +01:00
rstiskalek
f8756059d0
fix mass dtypev2
2022-10-11 13:46:57 +01:00
rstiskalek
c0947c8a4a
fix mass dtype
2022-10-11 13:34:59 +01:00
rstiskalek
075536b839
add nparts_to_start_ind func
2022-10-10 18:08:49 +01:00
rstiskalek
b119d21acf
add read particle file
2022-10-10 17:42:11 +01:00
rstiskalek
016be32634
add imports
2022-10-10 17:41:41 +01:00
rstiskalek
8290e56ceb
ignore *.pyc
2022-10-10 17:41:29 +01:00
rstiskalek
5043915fdc
start cleaning readsim
2022-10-02 11:18:30 +01:00
rstiskalek
54221a8ff5
first commit
2022-10-02 11:12:45 +01:00
Richard Stiskalek
ca5c465cf5
Create README.md
2022-09-29 14:45:59 +01:00
rstiskalek
b9b1ae6963
init commit
2022-09-29 14:41:02 +01:00
