6 commits

Author	SHA1	Message	Date
Richard Stiskalek	161c27d995	Particle match & file system & phase space (#11) ... * Create file system * add doc * add n_sim n_snap directly to paths * Move things to a single particle reader for consistency * add docstring * add srdcir, dumpdir and mmain_path * make boxunits work with paths * switch to using paths * add tempdumpdir * rm dependence on old functions * rm comment * rm unused import * go back to all imports * fix import bug * rm dependence on old functions * modernize code! * fix typo * fix typo * update fits to new data structureing * change docs * add julia repo * add setup * add install commands * ignore install files * add array flattening * update dependene * add positions reader * update manifest and projects * add func * update gitignore * pos matching progress * move file * rm comment * add velocities getter * fix bug * fix name bug * fix path bug * fix args func * add redshift calculation to catalogues * add shortcut to set n_sim and n_snap * if cond bug * add the cosine similarity * add verbosit iterator * add docs * update README * update README * update README	2022-11-25 10:44:08 +00:00
Richard Stiskalek	c748c87e45	New filesystem, basic neighbours calculation (#10) ... * simplify Planck catalogue * add MCXC and base survey * Add 2MPP classes * move match to MCXC to Planck * add halo catalogue * rm comment * rm unused imports * Move conversion to box * add min mass * Run on all simulations * rm old function * add combined catalogue * add halo positions * add knn neighbors * set to 5 sims for testing * add docstring * Switch to neighbours in a catalogue * rename io to read * fix indentation * rename to read * io -> read * add import * add RealisationMatcher * io -> read * add docstrings * add search_sim_indiices * update todo * keep make_cat at 10 for now * update nb	2022-11-22 10:00:01 +00:00
rstiskalek	06d3fede95	add max snapshot	2022-11-14 16:24:53 +00:00
rstiskalek	76349bab3f	add MPI and do for all boxes	2022-11-14 15:52:52 +00:00
Richard Stiskalek	7f58b1f78c	JAX and fix conc (#6) ... * change to log10 initlogRs * add uncertainty * add check if hessian negative * update TODO * update TODO * output the error too * save e_logRs * add concentration calculation * calcul concentration * missed comma in a list * Update TODO * fix bug * add box units and pretty status * make uncertainty optional * add BIC function * remove BIC again * add new overdensity calculation * change defualt values to max dist and mass * change to r200 * new halo find * speed up the calculation * add commented fucn * update TODO * add check whether too close to outside boundary * Update TODO * extract velocity as well * calculate m200 and m500 * update nb * update TODO	2022-11-05 21:17:05 +00:00
Richard Stiskalek	8a56c22813	Within halo work and NFW fit (#4) ... * add listing of snapshots * change distance to comoving * ignore cp files * rename nb * add str to list * add NFW profile shapes * add fits imports * Rename to Nsnap * in clumps_read only select props * make clumpid int * expand doc * add import * edit readme * distribute halos * add profile & posterior * add import * add import * add documentation * add rvs and init guess * update todo * update nb * add file * return end index too * change clump_ids format to int32 * skeleton of dump particle * update nb * add func to drop 0 clump indxs parts * add import * add halo dump * switch to float32 * Update TODO * update TODO * add func that loads a split * add halo object * Rename to clump * make post work with a clump * add optimiser * add Nsplits * ignore submission scripts * ignore .out * add dumppath * add job splitting * add split halos script * rename file * renaem files * rm file * rename imports * edit desc * add pick clump * add number of particles * update TODO * update todo * add script * add dumping * change dumpdir structure * change dumpdir * add import * Remove tqdm * Increase the number of splits * rm shuffle option * Change to remove split * add emojis * fix part counts in splits * change num of splits * rm with particle cut * keep splits * fit only if 10 part and more * add min distance * rm warning about not set vels * update TODO * calculate rho0 too * add results collection * add import * add func to combine splits * update TODO * add extract cols * update nb * update TODO	2022-10-30 20:16:56 +00:00