Richard Stiskalek
5500fbd2b9
Matching paper plots ( #91 )
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* Fix calculations of expected mass
* Add paper plots
* Edits to pltos
* Add overlap summary
* Add imports
* Add import
* Add binned stat
* Add fit
* Add more plots
* Add basic env
* Add histogram mode
* Edit expected mass
* Improve expected plots
* Clean up plot
* Improve separation plot
* Update plots
* Edit expected calculation
* Update plotting
* Update plots
* Update plots
* Update plots
* Add conc fraction
* Add halo maker sorting
* Renaming
* Add import
* Add NaN treatment
* add import
* Move cosine smi
* Update plots
* Move similarity
* Fix little bugs
* Shorten documentation
* Update plots
2023-10-17 12:11:15 +01:00
Richard Stiskalek
0af925e26a
Minor code improvements ( #87 )
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* Shorten docs
* Renames
2023-08-31 09:57:53 +01:00
Richard Stiskalek
acb8d9571c
Update units to be consistent. ( #78 )
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* Fix Quijote units
* Updates to units
* Fix how things are loaded
* Updating definitions & conventions
* Clear up how fiducial observers in quijote work
* Refactorize array manip
* Move function definition
* More code refactoring
* Remove unused argument
* Remove `convert_from_box`
* Make a note
* Converting particle units
* Add notes about units
* Remove box constants
* Add rho_crit0
* Fix spherical overdensity mass units
* Refactor more code
* Edit catalogue kwargs
* Edit the docstring
* Edit bounds
* Add new checks for empty array
* Remove unused import
* Remove old code
* Remove old function
* Update real 2 redshift
* Clear up the RSP conv
* Add comments
* Add some units
2023-07-28 21:07:28 +02:00
Richard Stiskalek
fb4b4edf19
Quijote snapshots support ( #77 )
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* Renaming
* Edit docs
* Delete old function
* Add a blank space
* Rename particle reader
* Add comments
* Rename
* Rename
* edit get_snapshots
* More renaming
* Remove old correction
* Add import
* Add basics of the Quijote reader
* Add a blank space
* Fix paths
* Rename function
* Fix HID and path
* Add more FoF reading
* Move definition
* Adding arguments
* Renaming
* Add kwargs for backward comp
* FoF Quijote return only hids
* Add sorting of quijote
* Add path to CSiBORG ICs snapshot
* Add support for Quijote
* initmatch paths for quijote
* Add kwargs
* Fix blank lines
* Rename kwarg
* Remove unused import
* Remove hardcoded numbers
* Update for Quijote
* Do not store velocities in QUijote ICs
* Box units mass Quijote
* Fix typo
* Ensure particles are not right at the edge
* Add structfit paths for QUuijote
* Basic CSiBORG units
* Add more quijote halo reading
* Add Quijote fitting
* Docs changes
* Docs changes
2023-07-27 18:41:00 +02:00
Richard Stiskalek
e08c741fc8
Improving halo fits ( #76 )
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* Add periodic distances
* Little corrections
* Fix little bug
* Modernise the script
* Small updates
* Remove clump
* Add new halo routines
* Fix weights
* Modernise the script
* Add check ups on convergence
* More convergence check ups
* Edit bounds
* Add default argument
* Update fit heuristic and NaNs
* Change maxiter
* Switch NFW minimization to log-sapce
* Remove print statement
* Turn convert_from_box abstract property required for all boxes.
* Move files
* Simplify script
* Improve the argument parser
* Remove optinal argument
* Improve argument parser
* Add a minimum concentration limit
2023-07-25 16:12:58 +02:00
Richard Stiskalek
eb8d070fff
CSiBORG FoF switch ( #75 )
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* Add moving FoF membership files
* add FoF membership path
* Add notes where its PHEW
* Add FoF catalogue path
* Correct typo
* Add more functionalities
* Make work with halo IDs from FoF
* Edit print statement
* Fix copy bug
* copy
* Add FoF catalogue reading
* Clean up script
* Fix typo
* Little edits
* Fix naming convention
* Rename key
* Remove loading substructure particles
* Rename CSiBORG Cat
* Rename clumps cat
* Rename cat
* Remove misplaced import
* Switch to halos
* rm import
* structfit of only halos
* Add FoF halo reading
* Add a short comment
* Fix __getitem__ to work with int
* Fix problems
* Improve __getitem__
* Add more conversion
* Fix indexing
* Fix __getitem__ assertion
* Fix numbers
* Rename
* Fix verbosity flags
* Add full Quijote HMF option
* Add plot of Quijote only
* Add quijote full paths
* Fix the fit_init script
* Renam arg
* Update .gitignore
* add default argument name
* Change default verbosity flag
* Modernise script structure
* Fix dictionary
* Fix reading to include m200c
* Modernise script
* Add args
2023-07-24 14:10:21 +02:00
Richard Stiskalek
2185846e90
CDF for nearest neighbour ( #63 )
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* Updat ebounds
* fix mistake
* add plot script
* fix which sims
* Add Poisson
* Just docs
* Hide things to __main__
* Rename paths
* Move old script
* Remove radpos
* Paths renaming
* Paths renaming
* Remove trunk stuff
* Add import
* Add nearest neighbour search
* Add Quijote fiducial indices
* Add final snapshot matching
* Add fiducial observer selection
* add boxsizes
* Add reading functions
* Little stuff
* Bring back the fiducial observer
* Add arguments
* Add quijote paths
* Add notes
* Get this running
* Add yaml
* Remove Poisson stuff
* Get the 2PCF script running
* Add not finished htings
* Remove comment
* Verbosity only on 0th rank!
* Update plotting style
* Add nearest neighbour CDF
* Save radial distance too
* Add centres
* Add basic plotting
2023-05-21 22:46:28 +01:00
Richard Stiskalek
1d847cbd06
Add Quijote ( #61 )
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* Rename paths object
* Remove redshift calculation
* Explicit keywrod arg
* Rename box units
* Basic renaming
* Little docs
* Rename paths
* add imports
* Sort imports
* Add Quijote cat
* Split boxes
* add Quijote path
* Add origin argument
* Update nbs
2023-05-13 17:37:34 +01:00
Richard Stiskalek
b710b8e89c
Add new ICs ( #59 )
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* edit IC paths
* Remove import
* Edit path
* Change naming
* Add __main__
* Script to match everything
* Edit docs
* Remove test statement
* Move import
* Update nb
2023-05-09 16:18:01 +01:00
Richard Stiskalek
56e39a8b1d
Overlapper improvements ( #53 )
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* Store indices as f32
* Fix init sorting
* Organise imports
* Rename pathing
* Add particle loading
* Improve particle reading
* Add h5py reader
* edit particle path
* Update particles loading
* update particles loading
* Fix particle dumping
* Add init fitting
* Fix bug due to insufficient precision
* Add commnet
* Add comment
* Add clumps catalogue to halo cat
* Add comment
* Make sure PIDS never forced to float32
* fix pid reading
* fix pid reading
* Update matching to work with new arrays
* Stop using cubical sub boxes, turn off nshift if no smoothing
* Improve caching
* Move function definitions
* Simplify calculation
* Add import
* Small updates to the halo
* Simplify calculation
* Simplify looping calculation
* fix tonew
* Add initial data
* Add skip condition
* Add unit conversion
* Add loading background in batches
* Rename mmain index
* Switch overlaps to h5
* Add finite lagpatch check
* fix column name
* Add verbosity flags
* Save halo IDs instead.
* Switch back to npz
* Delte nbs
* Reduce size of the box
* Load correct bckg of halos being matched
* Remove verbosity
* verbosity edits
* Change lower thresholds
2023-05-06 16:52:48 +01:00
