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Author SHA1 Message Date
rstiskalek
5435781e8d add the grav field 2022-11-30 13:41:35 +00:00
Richard Stiskalek
6aa3721c83
Potential (#13) 
* add basic density field

* Add TODO

* add field smoothing

* update how pos are calculated

* add transforms both ways

* add import

* add sky density

* add make skymap func

* update TODO

* update gitignore

* add potential field calculation

* delete boxsize setter

* add tidal tensor
 2022-11-27 07:53:38 +00:00
rstiskalek
ea73dfcd56 Update TODO 2022-11-25 16:46:28 +00:00
rstiskalek
2a5d6a03b6 add distance cut 2022-11-25 16:45:27 +00:00
rstiskalek
d8adf56614 edit TODO 2022-11-25 15:07:53 +00:00
Richard Stiskalek
ca45fbd5d9
add ascii writing (#12) 2022-11-25 15:06:10 +00:00
rstiskalek
469f4988fa update TODO 2022-11-25 12:45:47 +00:00
rstiskalek
4e87a96b97 fix bug(again) 2022-11-25 12:42:49 +00:00
rstiskalek
8d68f35cf9 swithc to own G 2022-11-25 12:28:46 +00:00
rstiskalek
a3c7d03ceb fix bug 2022-11-25 12:28:41 +00:00
rstiskalek
377d6ebb7e add lambda200c support 2022-11-25 12:24:06 +00:00
rstiskalek
69d1f28fcc add lambda200c calc 2022-11-25 12:23:43 +00:00
rstiskalek
e5208ed070 add note 2022-11-25 11:52:31 +00:00
rstiskalek
91bddb1d3a remove not good comments 2022-11-25 11:45:47 +00:00
rstiskalek
9fe745b0b4 add center of mass 2022-11-25 10:54:09 +00:00
Richard Stiskalek
161c27d995
Particle match & file system & phase space (#11) 
* Create file system

* add doc

* add n_sim n_snap directly to paths

* Move things to a single particle reader for consistency

* add docstring

* add srdcir, dumpdir and mmain_path

* make boxunits work with paths

* switch to using paths

* add tempdumpdir

* rm dependence on old functions

* rm comment

* rm unused import

* go back to all imports

* fix import bug

* rm dependence on old functions

* modernize code!

* fix typo

* fix typo

* update fits to new data structureing

* change docs

* add julia repo

* add setup

* add install commands

* ignore install files

* add array flattening

* update dependene

* add positions reader

* update manifest and projects

* add func

* update gitignore

* pos matching progress

* move file

* rm comment

* add velocities getter

* fix bug

* fix name bug

* fix path bug

* fix args func

* add redshift calculation to catalogues

* add shortcut to set n_sim and n_snap

* if cond bug

* add the cosine similarity

* add verbosit iterator

* add docs

* update README

* update README

* update README
 2022-11-25 10:44:08 +00:00
Richard Stiskalek
c748c87e45
New filesystem, basic neighbours calculation (#10) 
* simplify Planck catalogue

* add MCXC and base survey

* Add 2MPP classes

* move match to MCXC to Planck

* add halo catalogue

* rm comment

* rm unused imports

* Move conversion to box

* add min mass

* Run on all simulations

* rm old function

* add combined catalogue

* add halo positions

* add knn neighbors

* set to 5 sims for testing

* add docstring

* Switch to neighbours in a catalogue

* rename io to read

* fix indentation

* rename to read

* io -> read

* add import

* add RealisationMatcher

* io -> read

* add docstrings

* add search_sim_indiices

* update todo

* keep make_cat at 10 for now

* update nb
 2022-11-22 10:00:01 +00:00
rstiskalek
f5bf04c46e update nb 2022-11-20 14:11:35 +00:00
rstiskalek
6a9db75549 add pec redshift 2022-11-20 14:11:32 +00:00
rstiskalek
3352b06c1c add units 2022-11-20 14:11:25 +00:00
rstiskalek
1d9789c08e add vx 2022-11-20 14:11:19 +00:00
rstiskalek
1037aa4db9 add velocity conversion 2022-11-18 10:53:06 +00:00
rstiskalek
858a153fad add box2cosmoredshift 2022-11-18 10:44:41 +00:00
rstiskalek
06d3fede95 add max snapshot 2022-11-14 16:24:53 +00:00
rstiskalek
f33bf0c3b2 add the maximum snapshot 2022-11-14 16:22:45 +00:00
rstiskalek
76349bab3f add MPI and do for all boxes 2022-11-14 15:52:52 +00:00
Richard Stiskalek
17badf2652
X-ray data (#9) 
* add xray reading

* add import

* add more comments

* add data

* add nb

* add MCXC shortcut

* add match indxs to Planck of MCXC

* add import

* update TODO

* update readme

* add famous clusters

* add 2mpp_groups

* shorten paths

* add 2M++ groups

* add import

* Update TODO
 2022-11-10 07:40:44 +00:00
rstiskalek
f69def9878 Merge branch 'master' of https://github.com/Richard-Sti/galomatch 2022-11-06 21:02:57 +00:00
Richard Stiskalek
f0821c54bf
Clean up old functions (#8) 
* update nbs

* rm unused functions

* simplify loading

* optionally return counts as well

* update TODO

* update TODO
 2022-11-06 21:02:24 +00:00
rstiskalek
a3ccc029cd update TODO 2022-11-06 21:01:43 +00:00
rstiskalek
760ba06689 update TODO 2022-11-06 20:59:39 +00:00
rstiskalek
d4f89fc343 optionally return counts as well 2022-11-06 20:58:57 +00:00
rstiskalek
d69012424e simplify loading 2022-11-06 20:55:49 +00:00
rstiskalek
e4ec1c4daa rm unused functions 2022-11-06 20:55:34 +00:00
rstiskalek
9291414572 update nbs 2022-11-06 20:53:58 +00:00
rstiskalek
a0f187d660 update TODO 2022-11-06 10:28:32 +00:00
Richard Stiskalek
d32eb5c134
Data loading shortcut (#7) 
* add load_processed

* update TODO
 2022-11-06 10:26:24 +00:00
rstiskalek
364f3b2137 rm blank 2022-11-06 10:06:48 +00:00
rstiskalek
859e3f4eb2 change density to mass/mpc^3 2022-11-06 10:06:40 +00:00
rstiskalek
5fa429ceb0 Update TODO 2022-11-06 09:11:21 +00:00
rstiskalek
91ad3166f8 Update TODO 2022-11-06 09:07:27 +00:00
rstiskalek
0baa81a4f4 centre coords at 0 2022-11-06 09:06:03 +00:00
rstiskalek
1cd3f10848 add num density 2022-11-06 09:05:51 +00:00
rstiskalek
3979650663 add boxunits transform on array 2022-11-06 06:32:28 +00:00
Richard Stiskalek
7f58b1f78c
JAX and fix conc (#6) 
* change to log10 initlogRs

* add uncertainty

* add check if hessian negative

* update TODO

* update TODO

* output the error too

* save e_logRs

* add concentration calculation

* calcul concentration

* missed comma in a list

* Update TODO

* fix bug

* add box units and pretty status

* make uncertainty optional

* add BIC function

* remove BIC again

* add new overdensity calculation

* change defualt values to max dist and mass

* change to r200

* new halo find

* speed up the calculation

* add commented fucn

* update TODO

* add check whether too close to outside boundary

* Update TODO

* extract velocity as well

* calculate m200 and m500

* update nb

* update TODO
 2022-11-05 21:17:05 +00:00
rstiskalek
ee84c12a55 Merge branch 'master' of https://github.com/Richard-Sti/galomatch 2022-11-01 10:11:14 +00:00
Richard Stiskalek
ba98ecc299
Mass enclosed in a sphere calculation (#5) 
* rename nb

* add merge func

* rm bug..

* add static methods

* save rmin, rmax

* add properties for box units

* move radial info to the clump

* add Npart explicit

* move where rmin, rmax obtained

* add box cosmo

* add __getattr__

* add comments in units

* add enclosed spherical mass

* rm unused variables

* add clump mass setter

* add the halo index

* add enclosed overdensity

* add enclosed_overdensity

* simplify loss func

* opt result to nan

* change Rs to log10

* change back to attribs

* add H0 and h props

* add setattrs

* Remove global constants

* move Msuncgs above

* add crit density

* add dots

* add r200c and r500c

* add M200 and M500

* make lowercase

* output r200, r500, m200, m500

* update TODO

* update README

* fit NFW only up to r200

* add r178, m178

* add m178, r178

* update TODO
 2022-11-01 10:10:54 +00:00
rstiskalek
865077c3c2 rename nb 2022-10-31 16:47:24 +00:00
rstiskalek
88e2132232 update README 2022-10-30 20:23:35 +00:00
rstiskalek
09ce7b4b5e Update TODO 2022-10-30 20:21:48 +00:00