135 commits

Author	SHA1	Message	Date
P.M. Sutter	fa0d46c55a	moved all of sample_info printing to launchGenerate	2013-11-30 22:19:58 -06:00
P.M. Sutter	4cdcb2f48b	fixed bug in overlap launcher	2013-11-24 16:00:15 -06:00
P.M. Sutter	cde70952c4	added logarithmic binning for profiles	2013-11-18 08:00:19 -06:00
P.M. Sutter	377fb8eed8	added new option to automatically generate stacks with a given number of voids	2013-11-04 17:10:25 -06:00
P.M. Sutter	1335f3688e	sample_info.txt file now includes # tracer, volume info	2013-10-14 06:49:49 -05:00
P.M. Sutter	5ea91f12f5	temporary commit to check adjacencies in voids	2013-10-10 13:00:05 -05:00
P.M. Sutter	0fb3a39b1c	fixed wrongly-placed closefile	2013-10-08 20:57:58 -05:00
P.M. Sutter	2c5f6fcafb	fixed up automatic plotting scripts	2013-09-06 14:58:24 -05:00
P.M. Sutter	5c4be39a99	parameters added to scripts to handle real-space analysis	2013-09-06 14:56:46 -05:00
P.M. Sutter	7ba3b2a98d	prunevoids now can handle coordinate changes to cosmoving space in observations	2013-08-23 13:13:55 -05:00
P.M. Sutter	cd2bef15b3	stackVoidsZero now (partially) understands periodic boundaries	2013-07-12 03:15:13 -05:00
P.M. Sutter	fd2c5742b2	Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification	2013-06-29 05:27:06 -05:00
P.M. Sutter	0baf14fc48	voidoverlap now matched top-level -> any-level	2013-06-29 05:25:59 -05:00
P.M. Sutter	9700f0d495	prepration script now pays attention to halo/subhalo distinction, and only takes halos	2013-06-29 05:20:15 -05:00
P.M. Sutter	4c97bcb798	halos and hod now only take parent halos	2013-06-19 06:47:56 -05:00
Guilhem Lavaux	789e871a13	Updated launchers to follow the new location of jozov2	2013-06-11 11:58:29 +02:00
P.M. Sutter	9786812b2c	better separation of plotting colors	2013-06-02 20:50:18 -05:00
P.M. Sutter	ef5384c54b	prep script now estimates number of halos to get correct minimum threshold void size	2013-06-02 20:47:10 -05:00
P.M. Sutter	3e25f0c276	added dataset name which will be appended to sample nicknames; added descriptive nicknames to masked samples	2013-05-25 02:09:11 -05:00
P.M. Sutter	30655fedaf	fixed some bugs in halo handling	2013-05-07 13:43:45 -05:00
P.M. Sutter	195f19806a	halo files now have regularized names	2013-05-07 03:56:38 -05:00
P.M. Sutter	ae7b69f3ca	joggling in generateMock now disabled by default	2013-05-07 03:40:58 -05:00
P.M. Sutter	9a2588ddf6	Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification	2013-05-06 03:47:50 -05:00
P.M. Sutter	7a602ee8c4	updates to launchers	2013-05-06 03:47:42 -05:00
P.M. Sutter	1980fdd5d1	added joggling of input particles	2013-05-03 14:44:40 -04:00
P.M. Sutter	8be96d88f9	updated script defaults	2013-04-29 21:46:19 -05:00
P.M. Sutter	9c26996591	passing ellipticity file to voidOverlap	2013-04-28 14:20:19 -05:00
P.M. Sutter	0cc5529b08	checking for periodicity now pushed to function	2013-04-25 18:13:24 -05:00
P.M. Sutter	c088a87809	allow multiple stacks/slices for AP analysis within a redshift bin	2013-04-25 11:05:12 -05:00
P.M. Sutter	c81fd8913b	now outputs mass into particle and halo files	2013-04-25 09:35:32 -05:00
P.M. Sutter	7c6463ff8d	whoops, typed the variable name wrong	2013-04-23 07:42:23 -05:00
P.M. Sutter	76197f1196	prepareCatalogs now checks to see if subsampling is desired before actually subsampling...	2013-04-23 07:40:15 -05:00
P.M. Sutter	f17e2dbdc8	plotting now defaults to the untrimmed catalog	2013-04-11 09:53:36 -05:00
P.M. Sutter	dbc4c87c3e	removed a few extraneous checks in launchers	2013-04-11 09:53:01 -05:00
P.M. Sutter	765b39ac63	more informative pipeline defaults.py file to describe how to handle particle files; option to do relative or absolute subsampling	2013-04-11 09:50:04 -05:00
P.M. Sutter	2c2426f662	prepareCatalogs now first loads a parameter file full of defaults	2013-04-06 21:39:08 -05:00
P.M. Sutter	3b7b1dd4d2	void overlap analysis now uses untrimmed catalog by default	2013-04-01 13:04:40 -05:00
P.M. Sutter	2e832dd415	void overlap now gets barycenters from center_ file rather than barycenter_ file	2013-03-31 22:04:27 -05:00
P.M. Sutter	151c605335	pruneVoids now cleans out non-leaf voids; adjusted stackVoidsZero launcher to accept custom stacks	2013-03-30 15:24:45 -05:00
P.M. Sutter	94a4261bb9	switched to shorter 'parm' argument, more informative naming of subsamples	2013-03-28 21:31:16 -05:00
P.M. Sutter	afb562d419	once again, fixed bug in periodic boundary detection...	2013-03-24 16:06:01 -05:00
P.M. Sutter	8043742123	added script to compare stacks and radial profiles of matched voids	2013-03-23 11:50:17 -05:00
P.M. Sutter	f699ed372f	added nico's cross-correlation script to a new directory, analysis/	2013-03-22 11:46:20 -05:00
P.M. Sutter	02f756e8a5	integrated nico's cross-correlation backend and enabled plotting of the void distribution	2013-03-22 08:51:45 -05:00
P.M. Sutter	60965e1fa4	multiple levels of subsampling now correctly handled	2013-03-21 21:54:56 -05:00
P.M. Sutter	b1dc0abc0c	can now do sdf subsampling (optionally) within prepareCatalogs	2013-03-21 21:51:29 -05:00
P.M. Sutter	25a6ead259	can now do subsampling of sdf in prepareCatalogs	2013-03-20 07:21:02 -05:00
P.M. Sutter	7c172d5642	Merge branch 'master' of bitbucket.org:cosmicvoids/void_identification	2013-03-20 07:19:34 -05:00
P.M. Sutter	7c16c9477f	more correct handling of multiple subsample levels	2013-03-20 07:19:25 -05:00
Guilhem Lavaux	444cd8dad4	Added explanatory exception instead of a cryptic error for sample.dataFormat	2013-03-19 20:35:42 +01:00