guilhem_lavaux/cosmotool
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579 Commits 4 Branches 17 Tags 1.2 MiB
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342 Commits

Author SHA1 Message Date
Guilhem Lavaux
f058ebed12 Fix loadGadget 2016-02-05 16:53:39 +01:00
Guilhem Lavaux
ed602dad09 Clear EOF bits before seeking otherwise we get garbage data 2016-01-29 14:55:34 +01:00
Guilhem Lavaux
f2e015b1fb Reset checkpoint on seek 2016-01-28 16:08:54 +01:00
Guilhem Lavaux
3e775180fa Added support for gadget2 snap 2016-01-26 22:59:35 +01:00
Guilhem Lavaux
69460fcb96 HDF5 fixups 2015-12-17 09:55:41 +01:00
Guilhem Lavaux
da01fc87b6 Changed cmake variables again 2015-10-29 11:06:23 +01:00
Guilhem Lavaux
a9075815d4 Bundle FindHDF5 to avoid surprizes 2015-10-29 10:50:41 +01:00
Guilhem Lavaux
bd6853d96d Adjusted all paths for HDF5 2015-10-22 13:20:33 +02:00
Guilhem Lavaux
0096b696a3 Added new alias for type safety 2015-09-29 16:38:22 +02:00
Guilhem Lavaux
56ee1156f0 Fixed typo 2015-09-29 16:34:46 +02:00
Guilhem Lavaux
82e79dda78 Include c++ complex header 2015-09-06 08:35:24 +02:00
Guilhem Lavaux
9983aa1783 Added more automatic type conversions 2015-09-05 21:43:26 +02:00
Guilhem Lavaux
21507e3013 Fixed integrator to stop at exactly the right distance 2015-07-14 12:21:20 +02:00
Guilhem Lavaux
b668f9947d fixed include ordering in h5_readFlash. Expanded limits of kdtree. Better support for NETCDF4/HDF5. 2015-06-09 20:01:56 +02:00
Guilhem Lavaux
59b1b12be8 Merge branch 'master' of bitbucket.org:glavaux/cosmotool 2015-06-07 10:44:54 +02:00
Guilhem Lavaux
209dfec2b4 New adaptor for fftw_complex to C++ complex 2015-06-07 10:44:43 +02:00
Guilhem Lavaux
b639bcedaf Fixes for SPH. Workaround for buggy gadget headers. Fixed borg generation for newer API. 2015-06-03 10:31:09 +02:00
Guilhem Lavaux
c50679c31d Merge branch 'master' of bitbucket.org:glavaux/cosmotool 2015-04-29 10:18:15 +02:00
Guilhem Lavaux
ddaac4a97a Linked to python 2015-04-28 22:15:40 +02:00
Guilhem Lavaux
db1d63b04f Removed global variables 2015-04-28 22:08:39 +02:00
Guilhem Lavaux
15a98787d2 Merge branch 'master' of bitbucket.org:glavaux/cosmotool 2015-04-28 18:24:23 +02:00
Guilhem Lavaux
87f1b98ff8 Added original E&Hu. Added HDF5 link instruction. 2015-04-28 18:23:19 +02:00
Guilhem Lavaux
4684c6ea83 Merge branch 'master' of bitbucket.org:glavaux/cosmotool 2015-04-28 17:08:00 +02:00
Guilhem Lavaux
b86b7a86b3 Boost detection fixup 2015-04-28 17:07:57 +02:00
Guilhem Lavaux
5e7437b7d4 Merge branch 'master' of bitbucket.org:glavaux/cosmotool 2015-04-08 21:02:28 +02:00
Guilhem Lavaux
9b47369d0e Fixed HDF5 hyperslab 2015-04-08 21:01:27 +02:00
Guilhem Lavaux
4b51ee0c9f Include Boost dirs 2015-04-07 15:17:14 +02:00
Guilhem Lavaux
e2ef019ab5 Allow to opt-out from yorick classes 2015-04-07 14:45:38 +02:00
Guilhem Lavaux
8f762f9732 Merge branch 'master' of bitbucket.org:glavaux/cosmotool 2015-03-28 11:18:32 +01:00
Guilhem Lavaux
03fce51182 Moved extent generator definition up 2015-03-21 18:27:09 +01:00
Guilhem Lavaux
bf0be4fb61 Added another layer for hdf5_write_array 2015-03-09 15:31:11 +01:00
Guilhem Lavaux
1180e6ac88 MPI FFTW calls 2015-03-04 22:24:37 +01:00
Guilhem Lavaux
8bef99b742 Merge branch 'master' of bitbucket.org:glavaux/cosmotool 2015-02-26 10:39:49 +01:00
Guilhem Lavaux
c8ac088c74 Use full E constant again 2015-02-26 10:39:45 +01:00
Guilhem Lavaux
ae4187809e Merged 2015-02-26 10:38:39 +01:00
Guilhem Lavaux
0b40de23d0 Added some support for double precision gadget snapshot 2015-02-26 10:36:52 +01:00
Guilhem Lavaux
9629b24487 Fixed bug in CosmoPower/ Eisenstein & Hu 2015-02-24 17:41:30 +01:00
Guilhem Lavaux
b7392204ad Added possibility to do partial normalization 2015-02-24 14:48:08 +01:00
Guilhem Lavaux
535f25d710 Moved s_tilde 2015-02-24 14:45:09 +01:00
Guilhem Lavaux
c39f89d030 Preinit Hu-Wiggles constants. Fixed sound horizon. 2015-02-20 16:43:35 +01:00
Guilhem Lavaux
1fe8f58105 Removed spurious prints. Do better CosmoTool exception translation 2015-02-20 10:24:37 +01:00
Guilhem Lavaux
22aa572370 Added support for enum type in HDF5 2015-02-16 10:59:33 +01:00
Guilhem Lavaux
188af485c9 Do not auto-resize if it is not what we want 2015-02-15 19:40:14 +01:00
Guilhem Lavaux
48bdd03947 Merge branch 'master' of bitbucket.org:glavaux/cosmotool 2015-02-13 15:45:31 +01:00
Guilhem Lavaux
2164198f82 Support for static array in HDF5 2015-02-13 15:45:17 +01:00
Guilhem Lavaux
1ab31e6c19 hdf5_read_array now supports array witout resize. 2015-02-12 08:50:07 +01:00
Guilhem Lavaux
c853abe354 Simplified template substitution. Also more general. 2015-02-11 21:38:43 +01:00
Guilhem Lavaux
a26de4a2fa Fixed compilation error in HDF5 2015-02-11 21:27:27 +01:00
Guilhem Lavaux
ebaf13e336 HDF5 work 2015-02-11 21:23:44 +01:00
Guilhem Lavaux
1dbe46a358 Added missing FFTW call 2015-02-11 18:23:28 +01:00
Guilhem Lavaux
8af3dc4359 Made fourier library more flexible. Compatible with boost::multi_array now. 2015-02-11 15:10:09 +01:00
Guilhem Lavaux
8198cef3c5 Fixed openmp usage 2015-02-10 14:20:09 +01:00
Guilhem Lavaux
286d094dbb Merge branch 'master' of bitbucket.org:glavaux/cosmotool 2015-02-10 13:48:57 +01:00
Guilhem Lavaux
924c74eb24 Addded missing openmp file 2015-02-10 13:48:53 +01:00
Guilhem Lavaux
68bdc4fb31 Fixed compilation option for CosmoTool. Show a message to indicate which variant is used to build the python modules 2015-02-10 13:43:05 +01:00
Guilhem Lavaux
beb651c79a Fixed yorick_nc3, and necdf4 building (C++4). Fixed borg reading routines 2015-02-06 14:04:51 +01:00
Guilhem Lavaux
48900328d4 Removed spurious cout 2015-01-31 18:11:35 +01:00
Guilhem Lavaux
44756de2a9 Fixed support for automatic type saving in HDF5 2015-01-31 15:47:44 +01:00
Guilhem Lavaux
84e841814a Merge branch 'master' of bitbucket.org:glavaux/cosmotool 2015-01-31 15:11:51 +01:00
Guilhem Lavaux
2e2224982b Added managed of generic structures directly by the HDF5 array core 2015-01-31 15:11:44 +01:00
Guilhem Lavaux
29f991f0d4 OctTree is now a full template 2015-01-26 18:20:56 +01:00
Guilhem Lavaux
730185ff89 Changed tab 2015-01-26 18:16:43 +01:00
Guilhem Lavaux
37c677fd1f Fixed types for loading large simulations 2014-11-28 08:55:07 +01:00
Guilhem Lavaux
917a45b494 Added new timing helper in python 2014-07-28 09:33:08 +02:00
Guilhem Lavaux
8809d6c255 Upgraded gadget load to support variable masses. Adjusted simple3DFilter for that too. 2014-07-07 17:35:56 +02:00
Guilhem Lavaux
fc44597829 Added support for types and masses 2014-07-05 22:05:04 +02:00
Guilhem Lavaux
d23f79cbaf Templatized SPHSmooth. Reduced memory consumption of simple3DFilter 2014-06-14 17:18:28 +02:00
Guilhem Lavaux
cef0fb3786 Added a lean CIC filter 2014-06-12 17:16:59 +02:00
Guilhem Lavaux
302ed9a912 Fixed CIC errors. Added support for CosmoPower in _cosmotool.pyx 2014-06-03 09:51:26 +02:00
Guilhem Lavaux
5d3b56bfcb Tons of fixes in python binder. Loadgadget slightly more verbose 2014-05-31 08:43:22 +02:00
Guilhem Lavaux
f4187185a7 Hardened SimuData. Support writeGadget 2014-05-30 19:00:25 +02:00
Guilhem Lavaux
6d19fe666f Merged 2014-05-30 17:12:48 +02:00
Guilhem Lavaux
f0a951e38d Memory saving opportunities for lage KDTrees 2014-05-30 17:11:49 +02:00
Guilhem Lavaux
bf4977721f Added support for ramses in _cosmotool. Fixlet in gadget 2014-05-30 11:39:13 +02:00
Guilhem Lavaux
ab1a181bb6 First Python support 2014-05-25 11:11:44 +02:00
Guilhem Lavaux
bc655f1362 Merge branch 'master' of bitbucket.org:glavaux/cosmotool 2014-05-25 10:43:17 +02:00
Guilhem Lavaux
b584ff54a7 Added python 2014-05-25 10:43:06 +02:00
Guilhem Lavaux
7f27897b83 Updated copyright headers 2014-05-22 09:38:59 +02:00
Guilhem Lavaux
29c9536ff1 White space fix 2014-05-22 09:33:52 +02:00
Guilhem Lavaux
b89dbe0987 Finished packaging omptl 2014-05-22 09:27:53 +02:00
Guilhem Lavaux
950cfb3eb1 Fixed compilation issues 2014-05-21 21:57:37 +02:00
Guilhem Lavaux
47255ea25a HDF5 boost multi array transparent support 2014-05-20 16:16:46 +02:00
Guilhem Lavaux
11dd968f36 Compile CIC. Imported tool to convert gadget snapshot to density field 2014-05-20 11:19:45 +02:00
Guilhem Lavaux
c6668cbd0a Fixes to sphSmooth 2014-05-20 10:58:07 +02:00
Guilhem Lavaux
cc769b2b1d Added state definition in SPHSmooth. Fixed cmake LINK_FLAGS problem 2014-05-05 12:07:55 +02:00
Guilhem Lavaux
e3ff41e30a Added new calls specific to EuclidianTransform 2014-04-02 17:56:09 +02:00
Guilhem Lavaux
bba009ef42 Export correctly the const-ness of saveArray 2014-04-02 16:53:14 +02:00
Guilhem Lavaux
9ae42a2442 Fixed unit_vel in Ramses. Added a new type alias in FourierMap 2014-04-02 09:52:06 +02:00
Guilhem Lavaux
a2373d8919 Fixed types 2014-03-03 19:06:31 +01:00
Guilhem Lavaux
126e1461b9 Attempts to fix the conjugation in the dot-product 2014-03-03 18:27:38 +01:00
Guilhem Lavaux
c724700246 Fixed calls to get_K_p 2014-02-27 16:03:42 +01:00
Guilhem Lavaux
aed2920be7 Fixed interface get_Kvec_p 2014-02-27 15:59:25 +01:00
Guilhem Lavaux
fc2a0c9ddd Merged 2014-02-27 15:31:05 +01:00
Guilhem Lavaux
86dc4bd249 Fixed default arguments in healpix_transform. Fixed fftw detection in CMake 2014-02-27 15:30:21 +01:00
Guilhem Lavaux
bd310df1e3 Fixed incorrectly ordered parameters in prototype 2014-02-20 17:45:35 +01:00
Guilhem Lavaux
4737ee06a7 Removed 'critical' section as it may cause problem in calling function. The thread safety is left for the caller 2013-08-21 14:50:38 -04:00
Guilhem Lavaux
083cad3c77 Fix for NetCDF-4 ordering. Added new constructor to Fourier/Healpix to support weighted rings. 2013-07-17 12:11:55 +02:00
Guilhem Lavaux
cfae6184d5 Fixed initialization of realMap 2013-05-02 15:17:19 -04:00
Guilhem Lavaux
e2280a899f Moved plan creation into its subroutine 2013-05-02 15:04:25 -04:00
Guilhem Lavaux
0a412e0ec3 Merge branch 'master' of ssh://bitbucket.org/glavaux/cosmotool 2013-04-08 16:26:39 -04:00