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Added support for gadget2 snap

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This commit is contained in:
Guilhem Lavaux 2016-01-26 22:59:35 +01:00
parent c9a5d2ad3b
commit 3e775180fa
3 changed files with 68 additions and 14 deletions
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10
src/fortran.cpp
View File

@ -71,6 +71,16 @@ UnformattedRead::~UnformattedRead()
delete f;
}
int64_t UnformattedRead::position() const
{
return f->tellg();
}
void UnformattedRead::seek(int64_t pos)
{
f->seekg(pos, istream::beg);
}
// Todo implement primitive description
void UnformattedRead::setOrdering(Ordering o)
{

7
src/fortran.hpp
View File

@ -95,6 +95,11 @@ namespace CosmoTool
void skip(int64_t off)
throw (InvalidUnformattedAccess);
int64_t position() const;
void seek(int64_t pos);
void readOrderedBuffer(void *buffer, int size)
throw (InvalidUnformattedAccess);
protected:
bool swapOrdering;
CheckpointSize cSize;
@ -102,8 +107,6 @@ namespace CosmoTool
uint64_t checkPointAccum;
std::ifstream *f;
void readOrderedBuffer(void *buffer, int size)
throw (InvalidUnformattedAccess);
};
class UnformattedWrite: public FortranTypes

65
src/loadGadget.cpp
View File

@ -105,6 +105,11 @@ SimuData *CosmoTool::loadGadgetMulti(const char *fname, int id,
boost::function0<float> readToSingle;
long float_size;
if (GadgetFormat > 2) {
cerr << "Unknown gadget format" << endl;
return 0;
}
if (id >= 0) {
int k = snprintf(0, 0, "%s.%d", fname, id)+1;
char *out_fname = new char[k];
@ -124,6 +129,29 @@ SimuData *CosmoTool::loadGadgetMulti(const char *fname, int id,
}
typedef std::map<std::string, int64_t> BlockMap;
BlockMap blockTable;
if (GadgetFormat == 2) {
int64_t startBlock = 0;
char block[5];
int32_t blocksize;
try {
while (true) {
f->beginCheckpoint();
f->readOrderedBuffer(block, 4);
block[4] = 0;
blocksize = f->readInt32();
f->endCheckpoint();
blockTable[block] = f->position();
f->skip(blocksize);
}
} catch (EndOfFileException&) {}
f->seek(startBlock);
}
data = new SimuData;
if (data == 0) {
delete f;
@ -131,19 +159,26 @@ SimuData *CosmoTool::loadGadgetMulti(const char *fname, int id,
}
ssize_t NumPart = 0, NumPartTotal = 0;
#define ENSURE(name) { \
if (GadgetFormat == 2) { \
BlockMap::iterator iter = blockTable.find(name); \
if (iter == blockTable.end()) { \
std::cerr << "GADGET2: Cannot find block named '" << name << "'" << endl; \
if (data) delete data; \
delete f; \
return 0; \
} \
f->seek(iter->second); \
} \
}
try
{
ENSURE("HEAD");
loadGadgetHeader(f, h, data, id);
if (GadgetFormat == 1)
velmul = sqrt(h.time);
else if (GadgetFormat == 2)
velmul = 1/(h.time);
else {
cerr << "unknown gadget format" << endl;
abort();
}
velmul = sqrt(h.time);
if (h.flag_doubleprecision) {
//cout << "Gadget format with double precision" << endl;
@ -167,10 +202,11 @@ SimuData *CosmoTool::loadGadgetMulti(const char *fname, int id,
return 0;
}
if (loadflags & NEED_TYPE)
{
int p = 0;
data->type = new int[data->NumPart];
for (int k = 0; k < 6; k++)
for (int n = 0; n < h.npart[k]; n++,p++)
@ -189,6 +225,7 @@ SimuData *CosmoTool::loadGadgetMulti(const char *fname, int id,
try
{
ENSURE("POS ");
f->beginCheckpoint();
if (f->getBlockSize() != NumPart*float_size*3) {
// Check that single would work
@ -239,6 +276,7 @@ SimuData *CosmoTool::loadGadgetMulti(const char *fname, int id,
try
{
ENSURE("VEL ");
f->beginCheckpoint();
for(int k = 0, p = 0; k < 6; k++) {
for(int n = 0; n < h.npart[k]; n++) {
@ -271,6 +309,7 @@ SimuData *CosmoTool::loadGadgetMulti(const char *fname, int id,
if (loadflags & NEED_GADGET_ID) {
try
{
ENSURE("ID ");
f->beginCheckpoint();
data->Id = new long[data->NumPart];
if (data->Id == 0)
@ -314,8 +353,10 @@ SimuData *CosmoTool::loadGadgetMulti(const char *fname, int id,
try
{
long l = 0;
if (do_load)
if (do_load) {
ENSURE("MASS");
f->beginCheckpoint();
}
data->Mass = new float[NumPart];
for (int k = 0; k < 6; k++)
{
@ -360,6 +401,7 @@ SimuData *CosmoTool::loadGadgetMulti(const char *fname, int id,
return data;
}
#undef ENSURE
void CosmoTool::writeGadget(const std::string& fname, SimuData *data, int GadgetFormat)
@ -419,8 +461,7 @@ void CosmoTool::writeGadget(const std::string& fname, SimuData *data, int Gadget
f->endCheckpoint();
float velmul = 1.0;
if (GadgetFormat == 1)
velmul = sqrt(data->time);
velmul = sqrt(data->time);
f->beginCheckpoint();
for(int n = 0; n < data->NumPart; n++) {