Fix negative base in power law bias
This commit is contained in:
Deaglan Bartlett
parent
81d0e70965
commit
e55eee4b17
12 changed files with 153 additions and 195 deletions
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@ -251,6 +251,7 @@ class VelocityBORGLikelihood(borg.likelihood.BaseLikelihood):
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omega_m = self.fwd.getCosmoParams().omega_m
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for i in range(self.nsamp):
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print(f'\nSample {i}')
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muA = self.fwd_param.getModelParam('nullforward', f'mua{i}')
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alpha = self.fwd_param.getModelParam('nullforward', f'alpha{i}')
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lkl += vel2like(
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@ -270,7 +271,6 @@ class VelocityBORGLikelihood(borg.likelihood.BaseLikelihood):
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self.interp_order,
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self.bias_epsilon
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)
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# lkl = (output_density**2).sum()
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if not jnp.isfinite(lkl):
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lkl = self.bignum
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@ -364,6 +364,10 @@ def vel2like(cz_obs, v, MB_field, MB_pos, r, r_hMpc, sig_mu, sig_v, omega_m, muA
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"""
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Jitted part of dens2like
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"""
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print('Dens', MB_field.min(), MB_field.max())
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print('vel', v.min(), v.max())
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quit()
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tracer_vel = projection.interp_field(v,
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MB_pos,
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@ -378,7 +382,7 @@ def vel2like(cz_obs, v, MB_field, MB_pos, r, r_hMpc, sig_mu, sig_v, omega_m, muA
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MB_pos,
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jnp.zeros(3,)
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)
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# Convert velocities to redshifts
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zco = utils.z_cos(r, omega_m)
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cz_pred = utils.speed_of_light * zco + (1 + zco) * tracer_vr
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@ -396,8 +400,9 @@ def vel2like(cz_obs, v, MB_field, MB_pos, r, r_hMpc, sig_mu, sig_v, omega_m, muA
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interp_order,
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use_jitted=True,
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)
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los_density = jnp.power(1. + los_density + bias_epsilon, alpha)
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los_density = jax.nn.relu(1. + los_density)
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los_density = jnp.power(los_density + bias_epsilon, alpha)
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d2 = (delta_mu / sig_mu) ** 2
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best = jnp.amin(jnp.abs(d2), axis=1)
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@ -405,7 +410,7 @@ def vel2like(cz_obs, v, MB_field, MB_pos, r, r_hMpc, sig_mu, sig_v, omega_m, muA
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d2 = d2 - jnp.expand_dims(jnp.nanmin(d2, axis=1), axis=1)
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p_r = r ** 2 * jnp.exp(-0.5 * d2) * los_density
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p_r_norm = jnp.expand_dims(jnp.trapz(p_r, r, axis=1), axis=1)
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# Integrate to get likelihood
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d2 = delta_cz_sigv**2
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scale = jnp.nanmin(d2, axis=1)
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@ -414,13 +419,6 @@ def vel2like(cz_obs, v, MB_field, MB_pos, r, r_hMpc, sig_mu, sig_v, omega_m, muA
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p_cz = jnp.trapz(exp_delta_cz * p_r / p_r_norm, r, axis=1)
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lkl_ind = jnp.log(p_cz) - scale / 2 - 0.5 * jnp.log(2 * np.pi * sig_v**2)
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lkl = - lkl_ind.sum()
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# # DELETE THIS
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# p_cz = jnp.trapz(p_r / p_r_norm, r, axis=1)
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# lkl_ind = jnp.log(p_cz) - 0.5 * jnp.log(2 * np.pi * sig_v**2)
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# lkl = - lkl_ind.sum()
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# lkl = los_density.sum()
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# lkl = (MB_field**2).sum()
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return lkl
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@ -534,6 +532,7 @@ def build_gravity_model(state: borg.likelihood.MarkovState, box: borg.forward.Bo
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fwd_vel = velmodel(box, mod, af)
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elif velmodel_name == 'CICModel':
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rsmooth = float(config['model']['rsmooth'])
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print("I AM USING RSMOOTH", rsmooth)
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fwd_vel = velmodel(box, mod, rsmooth)
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else:
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fwd_vel = velmodel(box, mod)
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@ -673,10 +672,7 @@ def build_sampler(
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loop.addConditionToConditionGroup("warmup_model", partial(check_model_sampling, loop))
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print('Warmups:', begin_cosmo, begin_model)
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print(dir(loop))
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# quit()
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# return all_sampler
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return []
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@ -62,6 +62,16 @@ def borg_mock(s_hat, state, fwd_model, fwd_vel, ini_file, seed=None):
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cosmo = utils.get_cosmopar(ini_file)
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output_vel = fwd_vel.getVelocityField()
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nzero = np.sum(output_density == -1)
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ntot = np.prod(output_density.shape)
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print(f'Number of zeros: {nzero} of {ntot} - {nzero/ntot * 100} percent')
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print("\nMy velocity field", output_vel.min(), output_vel.max(), '\n')
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nnan = np.sum(np.isnan(output_vel))
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ntot = np.prod(output_vel.shape)
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print(f'Number of nans: {nnan} of {ntot} - {nnan/ntot * 100} percent')
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quit()
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# Add bulk flow
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bulk_flow = np.array(ast.literal_eval(config['model']['bulk_flow']))
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output_vel = output_vel + bulk_flow.reshape((3, 1, 1, 1))
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@ -1,9 +1,9 @@
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[system]
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console_output = borg_log
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VERBOSE_LEVEL = 2
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N0 = 8
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N1 = 8
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N2 = 8
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N0 = 128
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N1 = 128
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N2 = 128
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L0 = 500.0
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L1 = 500.0
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L2 = 500.0
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@ -49,7 +49,7 @@ nsteps = 20
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smooth_R = 4
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bias_epsilon = 1e-7
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interp_order = 1
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rsmooth = 1.
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rsmooth = 100.
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sig_v = 150.
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R_lim = none
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Nint_points = 201
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@ -1,30 +1,24 @@
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Memory still allocated at the end: 10.0405 MB
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Memory still allocated at the end: 34.75 MB
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Statistics per context (name, allocated, freed, peak)
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======================
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*none* 6.2686 0.141525 10.1813
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BORG LPT MODEL 35.397 35.3694 10.1823
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BORGForwardModel::setup 0.000183105 0 0.039917
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BorgLptModel::BorgLptModel 0.0263672 0 0.0398483
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BorgLptModel::~BorgLptModel 0 0.0315552 0
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CICModel::getVelocityField 18.8408 16.9146 10.1931
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CICModel::getVelocityFieldAlpha 56.3818 50.7437 10.2018
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/chain_forward_model.cpp]virtual void LibLSS::ChainForwardModel::forwardModel_v2(LibLSS::detail_input::ModelInput<3>) 25.0391 6.25977 10.1862
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/chain_forward_model.cpp]void LibLSS::ChainForwardModel::trigger_ag() 0.0195312 0.00390625 0.22258
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forward_model.cpp]void LibLSS::BORGForwardModel::setupDefault() 0.00976562 0 0.0134811
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/borg_lpt.cpp]std::shared_ptr<LibLSS::BORGForwardModel> build_borg_lpt(std::shared_ptr<LibLSS::MPI_Communication>, const LibLSS::BoxModel&, const LibLSS::PropertyProxy&) [with Grid = LibLSS::ClassicCloudInCell<double>; LibLSS::BoxModel = LibLSS::NBoxModel<3>] 0 0 0.00369263
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/lpt/borg_fwd_lpt_adj.cpp]void LibLSS::BorgLptModel<CIC>::clearAdjointGradient() [with CIC = LibLSS::ClassicCloudInCell<double>] 0 0.0236664 0
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/lpt/borg_fwd_lpt_adj.cpp]void LibLSS::BorgLptModel<CIC>::preallocate() [with CIC = LibLSS::ClassicCloudInCell<double>] 0.0236664 0 0.295334
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/particle_balancer/balanceinfo.hpp]void LibLSS::BalanceInfo::allocate(LibLSS::MPI_Communication*, size_t) 15.0802 15.0684 10.1823
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/primordial_as.cpp]std::shared_ptr<LibLSS::BORGForwardModel> build_primordial_as(std::shared_ptr<LibLSS::MPI_Communication>, const LibLSS::BoxModel&, const LibLSS::PropertyProxy&) 0.00180817 7.62939e-06 0.00187683
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/transfer_class.cpp]std::shared_ptr<LibLSS::BORGForwardModel> build_class(std::shared_ptr<LibLSS::MPI_Communication>, const LibLSS::BoxModel&, const LibLSS::PropertyProxy&) 0.00180817 7.62939e-06 0.00370026
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/model_io/base.hpp]void LibLSS::detail_model::ModelIO<Nd>::transfer(LibLSS::detail_model::ModelIO<Nd>&&) [with long unsigned int Nd = 3] 0 23.7539 0
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/velocity/velocity_cic.cpp]virtual void LibLSS::VelocityModel::CICModel::computeAdjointModel(LibLSS::VelocityModel::Base::arrayVelocityField_t) 0.197266 0.189941 0.27655
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/samplers/core/gridLikelihoodBase.cpp]LibLSS::GridDensityLikelihoodBase<Dims>::GridDensityLikelihoodBase(LibLSS::MPI_Communication*, const GridSizes&, const GridLengths&) [with int Dims = 3; GridSizes = std::array<long unsigned int, 3>; GridLengths = std::array<double, 3>] 0.00976562 0.00878906 0.0496826
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/tools/mpi/ghost_planes.hpp]void LibLSS::GhostPlanes<T, Nd>::setup(LibLSS::MPI_Communication*, PlaneList&&, PlaneSet&&, DimList&&, size_t) [with PlaneList = std::set<long int>&; PlaneSet = std::set<long int>&; DimList = std::array<long int, 2>&; T = std::complex<double>; long unsigned int Nd = 2; size_t = long unsigned int] 7.62939e-06 3.8147e-05 5.34058e-05
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/python/pyforward.cpp]void do_get_adjoint_model(LibLSS::BORGForwardModel*, pybind11::array) 0.00488281 0.00488281 0.227463
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/python/pyforward.cpp]void do_get_density_final(LibLSS::BORGForwardModel*, pybind11::array) 6.25977 5.00781 10.1823
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dispatch_plane_map 7.24792e-05 4.19617e-05 0.000125885
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exchanging nearby planes after projection 2.50635 2.50635 10.1926
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lpt_ic 6.25977 6.25977 10.1872
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*none* 32.25 410.232 170.482
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BORG LPT MODEL 113.12 0 348.602
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BORGForwardModel::setup 0.000183105 0 137.982
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BorgLptModel::BorgLptModel 96.75 0 137.982
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BorgLptModel::~BorgLptModel 0 129.28 0
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CICModel::getVelocityField 240.75 48.375 621.512
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CICModel::getVelocityFieldAlpha 146.25 145.125 638.762
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/chain_forward_model.cpp]virtual void LibLSS::ChainForwardModel::forwardModel_v2(LibLSS::detail_input::ModelInput<3>) 65 16.25 235.482
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forward_model.cpp]void LibLSS::BORGForwardModel::setupDefault() 32.5 0 41.232
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/borg_lpt.cpp]std::shared_ptr<LibLSS::BORGForwardModel> build_borg_lpt(std::shared_ptr<LibLSS::MPI_Communication>, const LibLSS::BoxModel&, const LibLSS::PropertyProxy&) [with Grid = LibLSS::ClassicCloudInCell<double>; LibLSS::BoxModel = LibLSS::NBoxModel<3>] 0 0 8.73196
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/particle_balancer/balanceinfo.hpp]void LibLSS::BalanceInfo::allocate(LibLSS::MPI_Communication*, size_t) 48.16 0 380.762
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/primordial_as.cpp]std::shared_ptr<LibLSS::BORGForwardModel> build_primordial_as(std::shared_ptr<LibLSS::MPI_Communication>, const LibLSS::BoxModel&, const LibLSS::PropertyProxy&) 4.36594 7.62939e-06 4.36601
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/transfer_class.cpp]std::shared_ptr<LibLSS::BORGForwardModel> build_class(std::shared_ptr<LibLSS::MPI_Communication>, const LibLSS::BoxModel&, const LibLSS::PropertyProxy&) 4.36594 7.62939e-06 8.73197
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/samplers/core/gridLikelihoodBase.cpp]LibLSS::GridDensityLikelihoodBase<Dims>::GridDensityLikelihoodBase(LibLSS::MPI_Communication*, const GridSizes&, const GridLengths&) [with int Dims = 3; GridSizes = std::array<long unsigned int, 3>; GridLengths = std::array<double, 3>] 32.5 32.25 170.482
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/tools/mpi/ghost_planes.hpp]void LibLSS::GhostPlanes<T, Nd>::setup(LibLSS::MPI_Communication*, PlaneList&&, PlaneSet&&, DimList&&, size_t) [with PlaneList = std::set<long int>&; PlaneSet = std::set<long int>&; DimList = std::array<long int, 2>&; T = std::complex<double>; long unsigned int Nd = 2; size_t = long unsigned int] 7.62939e-06 0.000495911 5.34058e-05
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/python/pyforward.cpp]void do_get_density_final(LibLSS::BORGForwardModel*, pybind11::array) 16.25 16 364.762
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dispatch_plane_map 0.000988007 0.000499725 0.00104141
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exchanging nearby planes after projection 0.5 0.5 606.387
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lpt_ic 16.25 16.25 381.012
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111
tests/fft_wisdom
111
tests/fft_wisdom
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@ -1,71 +1,44 @@
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(fftw-3.3.10 fftw_wisdom #x3c273403 #x192df114 #x4d08727c #xe98e9b9d
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(fftw_codelet_r2cf_16 2 #x10bdd #x10bdd #x0 #xa7e83312 #x11c3dce9 #x403202b1 #xba9376e9)
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(fftw_dft_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #xe2b7638c #xca3eaae0 #xe5990134 #x15b362bd)
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(fftw_codelet_n1bv_32_sse2 0 #x10bdd #x10bdd #x0 #x902cd310 #xa659999d #x6fde2637 #xb23e4fd2)
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(fftw_codelet_n1bv_16_sse2 0 #x10bdd #x10bdd #x0 #x9306ed57 #x98c44e85 #x5cdf298e #xbcec4b1f)
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(fftw_codelet_n1bv_8_sse2 0 #x10bdd #x10bdd #x0 #xa80dd5c4 #x9fd5b8d4 #x3d6788bf #x5a24b1fc)
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(fftw_dft_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x40741233 #x3efc06b3 #x0f24264f #x64099f05)
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(fftw_dft_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x4b54e3ca #x4f94ebf3 #x244f4da3 #x2412ca79)
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(fftw_codelet_n1fv_32_avx 0 #x10bdd #x10bdd #x0 #x94cb38f8 #xed5987e0 #xa3d4151a #xeb412d04)
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(fftw_dft_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x84033142 #x81339a41 #xb78a491e #x66362e05)
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(fftw_dft_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #xcaf756bf #x6e71602c #x20e86581 #x110e9e90)
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(fftw_rdft2_rank_geq2_register 0 #x10bdd #x10bdd #x0 #x3ca106a5 #xda967bc9 #xbb014751 #x74e4e6ae)
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(fftw_codelet_n1fv_32_sse2 0 #x10bdd #x10bdd #x0 #xe61c7c8d #x2cea019e #x8489a633 #x8d6543c6)
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(fftw_dft_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x2e35848a #x0ae8a985 #xadfbead1 #xe429563d)
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(fftw_codelet_r2cf_32 2 #x10bdd #x10bdd #x0 #xe5219ff5 #x7cc0cc2f #x9ce07377 #x12d27b02)
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(fftw_rdft2_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x6b14be63 #x1d99ab98 #xe3227f85 #xb1db4db0)
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(fftw_codelet_n1fv_16_sse2 0 #x10bdd #x10bdd #x0 #xf8443ec2 #xfa3955a3 #xa7e19627 #xab87bd57)
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(fftw_dft_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #xa3839252 #xea4efad1 #xaf8b0cda #xd8776397)
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(fftw_dft_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #xa7f53555 #x21d66b4e #x9964caab #xd7909594)
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(fftw_codelet_r2cf_8 2 #x10bdd #x10bdd #x0 #x27bdc5f1 #x0e0fc54e #x15095bf2 #x0e78cf6f)
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(fftw_codelet_r2cf_16 2 #x10bdd #x10bdd #x0 #xc41f6ea8 #x979a9054 #x4af7b3f3 #xcbc1bd6e)
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(fftw_codelet_n1bv_32_avx 0 #x10bdd #x10bdd #x0 #x6d197f20 #xfc9cbd23 #x91ddb367 #x208619cb)
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(fftw_codelet_r2cf_32 2 #x10bdd #x10bdd #x0 #x68269cfc #xb89b69b3 #x4eaad8fa #x9807c679)
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(fftw_dft_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x8de57ca6 #x4d942122 #xcc9f63a3 #xda26628d)
|
||||
(fftw_rdft2_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x4cae513c #xd64a8afb #x187c71d1 #xb541a5b8)
|
||||
(fftw_codelet_n1fv_32_avx 0 #x10bdd #x10bdd #x0 #xb5d7d23e #x26089494 #x55133ef3 #x8ac38174)
|
||||
(fftw_codelet_n1fv_8_sse2 0 #x10bdd #x10bdd #x0 #x7035d47e #x31f840f3 #x9383f4ab #x075b88bb)
|
||||
(fftw_rdft2_rank_geq2_register 0 #x10bdd #x10bdd #x0 #x7446ec55 #x3f800a5f #xba25afcf #xc0e9d5c1)
|
||||
(fftw_codelet_n1bv_16_sse2 0 #x10bdd #x10bdd #x0 #xd9d77a34 #x2764630e #xaa589a35 #xc9be81db)
|
||||
(fftw_dft_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #xe7f77f6a #xaf2de8b8 #xad19bc70 #x80305f29)
|
||||
(fftw_dft_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x37e6a727 #xc85b1b7c #x65d78a7d #xf0595850)
|
||||
(fftw_rdft2_rank_geq2_register 0 #x10bdd #x10bdd #x0 #x962543ac #xb000f636 #xb27fc586 #xd4a83bb7)
|
||||
(fftw_rdft2_rank_geq2_register 0 #x10bdd #x10bdd #x0 #x68900aea #xb640ce9e #xcd3b0e06 #x8170fa63)
|
||||
(fftw_dft_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x0ac209ed #x737616a2 #xc31f0ad8 #x13c3716f)
|
||||
(fftw_dft_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x21347a5d #x286e0d10 #xabf9ff02 #xccdf80a5)
|
||||
(fftw_codelet_n1bv_16_avx 0 #x10bdd #x10bdd #x0 #x36abc7b8 #x1cd3eb8f #xa4996ada #x1a06c95a)
|
||||
(fftw_rdft2_rank_geq2_register 0 #x10bdd #x10bdd #x0 #x855943e1 #x80e0a0ca #xd37ea014 #x23f0deee)
|
||||
(fftw_dft_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #xbffceb36 #x5b340e87 #xc2433c88 #x10e155b2)
|
||||
(fftw_codelet_n1fv_16_sse2 0 #x10bdd #x10bdd #x0 #x7304fb62 #xa799c05d #xa4bd6105 #x6d7bd16b)
|
||||
(fftw_codelet_n1fv_8_sse2 0 #x10bdd #x10bdd #x0 #xdbede2d6 #x5032ed11 #x297abbbf #x39122c9f)
|
||||
(fftw_codelet_r2cb_16 2 #x10bdd #x10bdd #x0 #x5bdedfde #x107be498 #x869a0bfb #x7cc04b4f)
|
||||
(fftw_rdft2_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x7ec9785e #x02957b55 #xab1017dc #xdcd04ed7)
|
||||
(fftw_dft_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x45123427 #x01281369 #xb95432bf #x1feb837a)
|
||||
(fftw_dft_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x91265544 #x90ab0f94 #x1c6548b3 #xe92ee441)
|
||||
(fftw_dft_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x99251b68 #x8a372a47 #xa305bb39 #x4df59c76)
|
||||
(fftw_rdft2_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x40ffeb6f #x4d232a35 #x49c61e65 #x4d75fa83)
|
||||
(fftw_rdft2_rank_geq2_register 0 #x10bdd #x10bdd #x0 #xe6ba1829 #x368612bb #x2bdab11c #x2fc35e23)
|
||||
(fftw_dft_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x404fdd72 #x2323d034 #xc860c577 #x4779492a)
|
||||
(fftw_rdft2_rank_geq2_register 0 #x10bdd #x10bdd #x0 #xc3c9e752 #x39b3927b #x7df101ab #x79309943)
|
||||
(fftw_rdft2_rank_geq2_register 0 #x10bdd #x10bdd #x0 #x7b0c4ef3 #x2018ef0d #xa437b495 #xaddfa382)
|
||||
(fftw_dft_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x7e4e30fa #xc1ef6b3d #xbc1076dd #xc79407b9)
|
||||
(fftw_codelet_r2cb_32 2 #x10bdd #x10bdd #x0 #x4e6e3714 #xebce55aa #x0ede5253 #x4faf4524)
|
||||
(fftw_dft_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #xd78cc60c #x6e1210c6 #x5868829d #x70ada990)
|
||||
(fftw_codelet_n1bv_8_sse2 0 #x10bdd #x10bdd #x0 #x90888d2b #x6076f166 #x437260f2 #x93ff29c3)
|
||||
(fftw_codelet_n1bv_16_avx 0 #x10bdd #x10bdd #x0 #xdf3d687a #xe46fb97f #x6ee0e7aa #x945d2abd)
|
||||
(fftw_dft_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #xdd819205 #xc9fe9ea4 #x32ec81f1 #x4bbca283)
|
||||
(fftw_codelet_n1bv_32_avx 0 #x10bdd #x10bdd #x0 #x35d0d312 #x6b498ae1 #x1ddcffdc #x4a1a1998)
|
||||
(fftw_rdft2_rank_geq2_register 0 #x10bdd #x10bdd #x0 #x2d4d9e0b #x4a34f327 #x275f3ae1 #x25641e46)
|
||||
(fftw_dft_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #xe0a3b250 #xab7e7c07 #xf0935dde #x1568a95f)
|
||||
(fftw_dft_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x9ff9c3f3 #xf143b736 #xce2dc789 #x4d442c4a)
|
||||
(fftw_rdft2_rank_geq2_register 0 #x10bdd #x10bdd #x0 #x0f7b58ed #xae4d4f79 #xe2fc8e0f #x211d3490)
|
||||
(fftw_codelet_r2cb_8 2 #x10bdd #x10bdd #x0 #x51e5f6b8 #x566aac6d #x249913ff #xf363e314)
|
||||
(fftw_dft_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #xa2573247 #x00a395db #xf017dd19 #x1df50dd6)
|
||||
(fftw_dft_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x1f2e97fe #x61895cd8 #x6073a2f5 #x6ada2663)
|
||||
(fftw_rdft2_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #xfae0bb4c #xd2ae28c3 #x4adfa199 #xc55e4e63)
|
||||
(fftw_rdft2_rank_geq2_register 0 #x10bdd #x10bdd #x0 #x8954f8e1 #x6c6f7b1c #xd3d53834 #xc9eb25c1)
|
||||
(fftw_codelet_n1fv_16_avx 0 #x10bdd #x10bdd #x0 #x60ba7657 #xefd487be #x5ac1f2cf #x8eb91f0f)
|
||||
(fftw_rdft2_rank_geq2_register 0 #x10bdd #x10bdd #x0 #x3c2e2a1a #x07c08954 #x35c337d9 #x80864862)
|
||||
(fftw_codelet_n1fv_16_avx 0 #x10bdd #x10bdd #x0 #xca718bf8 #x524674ba #x011a6dfe #xfbebca33)
|
||||
(fftw_codelet_r2cb_32 2 #x10bdd #x10bdd #x0 #x92bf92d5 #xdc456f1e #x5a32a424 #xe1f76e14)
|
||||
(fftw_rdft2_rank_geq2_register 0 #x10bdd #x10bdd #x0 #x5ee9deaf #x803496c0 #xdcaa85b6 #x11dfd168)
|
||||
(fftw_codelet_n1bv_128_avx 0 #x10bdd #x10bdd #x0 #x0dab20d0 #x841c928d #x8f95a044 #x8648861a)
|
||||
(fftw_rdft2_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x27ed4958 #x7b810169 #x868b075a #xbdfeccde)
|
||||
(fftw_rdft2_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #xf7cc2e58 #xe8598af0 #xccbe32f3 #x01416c7a)
|
||||
(fftw_rdft2_rank_geq2_register 0 #x10bdd #x10bdd #x0 #xfc62f116 #x4b25ceff #xf057784c #x1ea58257)
|
||||
(fftw_codelet_r2cf_4 2 #x10bdd #x10bdd #x0 #x1a0eadc5 #x01b966bd #xba3ec0cb #x3bbf7704)
|
||||
(fftw_rdft2_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #xbf003229 #x49df7e30 #xb57b18ee #xbdc8f696)
|
||||
(fftw_codelet_n1fv_128_avx 0 #x10bdd #x10bdd #x0 #xf1051924 #x3cb53423 #xbc2120c2 #xdee4d17c)
|
||||
(fftw_codelet_r2cbIII_2 2 #x10bdd #x10bdd #x0 #xee2cb083 #x182690ea #x841aa951 #xd87b9709)
|
||||
(fftw_rdft2_rank_geq2_register 0 #x10bdd #x10bdd #x0 #xd18676aa #xa490b2be #x8a110381 #x0674ed90)
|
||||
(fftw_rdft2_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x5863400c #x3e549e36 #x70702991 #x4cb1a8b4)
|
||||
(fftw_dft_nop_register 0 #x10bdd #x10bdd #x0 #xefadd2cf #x2599b1f7 #xf3609948 #x6f687984)
|
||||
(fftw_codelet_t2bv_4_avx 0 #x10bdd #x10bdd #x0 #x222fe56a #x400e7062 #xaa0102ab #xdac525c7)
|
||||
(fftw_rdft2_rank_geq2_register 0 #x10bdd #x10bdd #x0 #xb5717c43 #xea8d28e7 #x773b72ad #xab4f7e98)
|
||||
(fftw_dft_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x74a4b38e #x3a9542bb #x7c53e952 #xd047b5ac)
|
||||
(fftw_codelet_n1fv_128_avx 0 #x10bdd #x10bdd #x0 #x9ca2bad9 #x6195e6cd #xf7a9bd69 #x1a6adf98)
|
||||
(fftw_rdft2_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x626328cb #x27898515 #xac7524f5 #xe381e924)
|
||||
(fftw_codelet_hc2cbdftv_2_avx 0 #x10bdd #x10bdd #x0 #xbcdfd9e5 #xf7782660 #x8651ac2f #xd4223c63)
|
||||
(fftw_codelet_n2fv_32_avx 0 #x10bdd #x10bdd #x0 #x58b9641c #x9e30bdf8 #xf0f47ae8 #x7655e569)
|
||||
(fftw_codelet_n1bv_128_avx 0 #x10bdd #x10bdd #x0 #x466c1810 #xae9f2666 #xc4baf3f0 #xab78a00c)
|
||||
(fftw_rdft2_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x0b420fb7 #x88eec800 #x18e6f77b #xee6f47cc)
|
||||
(fftw_codelet_n1bv_128_avx 0 #x10bdd #x10bdd #x0 #xfaefc863 #x3a3ba8fc #x031c855a #x015b826a)
|
||||
(fftw_rdft2_rank_geq2_register 0 #x10bdd #x10bdd #x0 #x2b1f5925 #xf71b5dfe #xe9835918 #xebd9e013)
|
||||
(fftw_rdft2_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #xbd602caa #x29e01361 #xedd1a545 #x43ec5754)
|
||||
(fftw_codelet_r2cfII_4 2 #x10bdd #x10bdd #x0 #xefbb9b83 #x7a1273f7 #x44738c83 #x09e09d33)
|
||||
(fftw_codelet_hc2cfdftv_4_avx 0 #x10bdd #x10bdd #x0 #x181d5f02 #xe52fa6f8 #x2c40517b #x5c7e639e)
|
||||
(fftw_rdft2_rank_geq2_register 0 #x10bdd #x10bdd #x0 #xac037af4 #x0cfa848c #x57252557 #xda3837a4)
|
||||
(fftw_dft_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #xa0f80596 #x3d1d8059 #xce975432 #x8f20aeca)
|
||||
(fftw_codelet_r2cb_2 2 #x10bdd #x10bdd #x0 #x99718546 #x87fcd081 #x11825ef6 #x9398cd27)
|
||||
(fftw_dft_nop_register 0 #x10bdd #x10bdd #x0 #x54cdef15 #xc5bb0b98 #x2bd11131 #x922134d4)
|
||||
(fftw_rdft_rank0_register 3 #x10bdd #x10bdd #x0 #xec8516b0 #xa88a37cc #x2870b0c6 #xe1bc2e8e)
|
||||
(fftw_dft_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x007adcc2 #x9232f02f #x8145da1e #x6f71eb23)
|
||||
(fftw_codelet_n2bv_16_avx 0 #x10bdd #x10bdd #x0 #x2bbbefa0 #xe1658c41 #x1edcd3e8 #xfc8538a3)
|
||||
(fftw_rdft2_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x70aef0dd #xa106222c #x1a3885f9 #x770e380d)
|
||||
(fftw_dft_buffered_register 1 #x10bdd #x10bdd #x0 #x5a8b97d2 #x7beb56fa #xd471ea51 #x958af4a2)
|
||||
(fftw_codelet_n1fv_128_avx 0 #x10bdd #x10bdd #x0 #x4e3cf147 #x8f793c68 #x70b49925 #x52917fe0)
|
||||
(fftw_dft_buffered_register 1 #x10bdd #x10bdd #x0 #x221ab00c #x079c5d40 #x5de8abb4 #xaf85805a)
|
||||
(fftw_dft_r2hc_register 0 #x10bdd #x10bdd #x0 #x6b45fee6 #xba1b589d #x3066e6b5 #x33be97f3)
|
||||
(fftw_rdft2_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x201d20d9 #x0d2e56ec #xc45b8566 #xa8cd33c7)
|
||||
(fftw_dft_r2hc_register 0 #x10bdd #x10bdd #x0 #xf9968ceb #xd3b2d43e #x0346b437 #xd743c3e1)
|
||||
(fftw_rdft2_thr_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #x4052c515 #x478d7f95 #x5afa91a6 #x4aa8e677)
|
||||
(fftw_dft_vrank_geq1_register 0 #x10bdd #x10bdd #x0 #xeb6d2e88 #x6227e668 #xd7d170d2 #x1daa4985)
|
||||
)
|
||||
|
|
|
|||
|
|
@ -37,6 +37,12 @@ mylike.updateCosmology(cosmo)
|
|||
s_hat = np.fft.rfftn(np.random.randn(*box_in.N)) / box_in.Ntot ** (0.5)
|
||||
mylike.generateMockData(s_hat, state)
|
||||
|
||||
scale = 1.0
|
||||
L = mylike.logLikelihoodComplex(scale * s_hat, None)
|
||||
print(L)
|
||||
|
||||
quit()
|
||||
|
||||
if test_scaling:
|
||||
all_scale = np.linspace(0.5, 1.5, 100)
|
||||
all_lkl = np.empty(all_scale.shape)
|
||||
|
|
@ -52,6 +58,7 @@ if test_scaling:
|
|||
ax.axvline(x=1, color='k')
|
||||
ax.set_xlabel(r'$\hat{s}$ scaling')
|
||||
ax.set_ylabel(r'$\mathcal{L}$')
|
||||
ax.set_xlim(all_scale.min(), all_scale.max())
|
||||
fig.tight_layout()
|
||||
fig.savefig('../figs/scaling_test.png')
|
||||
fig.clf()
|
||||
|
|
|
|||
|
|
@ -4,84 +4,62 @@ Cumulative timing spent in different context
|
|||
--------------------------------------------
|
||||
Context, Total time (seconds)
|
||||
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/chain_forward_model.cpp]virtual void LibLSS::ChainForwardModel::forwardModel_v2(LibLSS::detail_input::ModelInput<3>) 1282 34.5484
|
||||
BORG LPT MODEL 1282 33.0864
|
||||
BORG forward model 1282 32.9949
|
||||
CICModel::getVelocityField 1283 9.73471
|
||||
CICModel::getVelocityFieldAlpha 3849 7.41442
|
||||
FFTW_Manager::create_r2c_plan 5142 2.65586
|
||||
FFTW_Manager::create_c2r_plan 5141 2.57818
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forward_model.cpp]void LibLSS::ForwardModel::setCosmoParams(const LibLSS::CosmologicalParameters&) 34 2.20232
|
||||
lpt_ic 1282 1.63669
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/borg_lpt.cpp]void LibLSS::BorgLptModel<CIC>::updateCosmo() [with CIC = LibLSS::ClassicCloudInCell<double>] 5 1.02187
|
||||
lightcone computation 1 0.998
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/cosmo.cpp]void LibLSS::Cosmology::precompute_d_plus() 1 0.917015
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/hermitic.hpp]virtual void LibLSS::ForwardHermiticOperation::getDensityFinal(LibLSS::detail_output::ModelOutput<3>) 1282 0.595479
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/tools/hermiticity_fixup.cpp]void LibLSS::Hermiticity_fixer<T, Nd>::forward(CArrayRef&) [with T = double; long unsigned int Nd = 3; CArrayRef = boost::multi_array_ref<std::complex<double>, 3>] 1282 0.535228
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/tools/hermiticity_fixup.cpp]typename std::enable_if<(Dim != 1), void>::type fix_plane(Mgr&, Ghosts&&, CArray&&, size_t*) [with long unsigned int rank = 0; Mgr = LibLSS::FFTW_Manager<double, 3>; Ghosts = LibLSS::Hermiticity_fixer<double, 3>::forward(CArrayRef&)::<lambda(ssize_t)>; CArray = boost::detail::multi_array::multi_array_view<std::complex<double>, 2>; long unsigned int Dim = 2; typename std::enable_if<(Dim != 1), void>::type = void; size_t = long unsigned int] 2564 0.500125
|
||||
FFTW_Manager::execute_c2r 8985 0.339934
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/python/pyforward.cpp]void do_get_density_final(LibLSS::BORGForwardModel*, pybind11::array) 1282 0.232009
|
||||
FFTW_Manager::execute_r2c 5142 0.17592
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/lpt/borg_fwd_lpt.cpp]void LibLSS::BorgLptModel<CIC>::getDensityFinal(LibLSS::detail_output::ModelOutput<3>) [with CIC = LibLSS::ClassicCloudInCell<double>] 1282 0.171371
|
||||
Classic CIC projection 6415 0.161445
|
||||
FFTW_Manager::destroy_plan 10282 0.160099
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/model_io.cpp]LibLSS::detail_output::ModelOutputBase<Nd, Super>::~ModelOutputBase() [with long unsigned int Nd = 3; Super = LibLSS::detail_model::ModelIO<3>] 16683 0.148489
|
||||
exchanging nearby planes after projection 5133 0.132258
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/model_io.cpp]void LibLSS::detail_output::ModelOutputBase<Nd, Super>::transfer(LibLSS::detail_output::ModelOutputBase<Nd, Super>&&) [with long unsigned int Nd = 3; Super = LibLSS::detail_model::ModelIO<3>] 14113 0.109589
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/particle_balancer/balanceinfo.hpp]void LibLSS::BalanceInfo::allocate(LibLSS::MPI_Communication*, size_t) 2565 0.0855438
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/transfer_class.cpp]virtual void LibLSS::ForwardClass::updateCosmo() 5 0.0786533
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/python/pyforward.cpp]void transfer_in(std::shared_ptr<LibLSS::FFTW_Manager<double, 3> >&, T&, U&, bool) [with T = boost::multi_array_ref<std::complex<double>, 3>; U = pybind11::detail::unchecked_reference<std::complex<double>, 3>] 1282 0.0780552
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/class_cosmo.cpp]LibLSS::ClassCosmo::ClassCosmo(const LibLSS::CosmologicalParameters&, unsigned int, double, std::string, unsigned int, const std::map<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >&) 1 0.0778988
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/cosmo.cpp]void LibLSS::Cosmology::precompute_com2a() 1 0.0569591
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/chain_forward_model.cpp]virtual void LibLSS::ChainForwardModel::getDensityFinal(LibLSS::detail_output::ModelOutput<3>) 1282 0.0554107
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/model_io/base.hpp]void LibLSS::detail_model::ModelIO<Nd>::transfer(LibLSS::detail_model::ModelIO<Nd>&&) [with long unsigned int Nd = 3] 37208 0.0357777
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/velocity/velocity_cic.cpp]virtual void LibLSS::VelocityModel::CICModel::computeAdjointModel(LibLSS::VelocityModel::Base::arrayVelocityField_t) 1 0.028122
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/chain_forward_model.cpp]virtual void LibLSS::ChainForwardModel::adjointModel_v2(LibLSS::detail_input::ModelInputAdjoint<3>) 1 0.0271402
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/chain_forward_model.cpp]void LibLSS::ChainForwardModel::trigger_ag() 1 0.0271251
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/lpt/borg_fwd_lpt_adj.cpp]void LibLSS::BorgLptModel<CIC>::getAdjointModelOutput(LibLSS::detail_output::ModelOutputAdjoint<3>) [with CIC = LibLSS::ClassicCloudInCell<double>] 1 0.0259611
|
||||
BORG adjoint model (particles) 1 0.0259384
|
||||
LPT-IC adjoint 1 0.0258888
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/transfer_class.cpp]virtual void LibLSS::ForwardClass::forwardModel_v2(LibLSS::detail_input::ModelInput<3>) 1282 0.0198379
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/primordial_as.cpp]virtual void LibLSS::ForwardPrimordial_As::forwardModel_v2(LibLSS::detail_input::ModelInput<3>) 1282 0.0194489
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/model_io.cpp]void LibLSS::detail_output::ModelOutputBase<Nd, Super>::close() [with long unsigned int Nd = 3; Super = LibLSS::detail_model::ModelIO<3>] 16683 0.0139736
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/model_io.cpp]void LibLSS::detail_output::ModelOutputBase<Nd, Super>::setRequestedIO(LibLSS::PreferredIO) [with long unsigned int Nd = 3; Super = LibLSS::detail_model::ModelIO<3>] 6415 0.00580403
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/model_io.cpp]void LibLSS::detail_input::ModelInputBase<Nd, Super>::setRequestedIO(LibLSS::PreferredIO) [with long unsigned int Nd = 3; Super = LibLSS::detail_model::ModelIO<3>] 5132 0.00454889
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/tools/hermiticity_fixup.cpp]LibLSS::Hermiticity_fixer<T, Nd>::Hermiticity_fixer(Mgr_p) [with T = double; long unsigned int Nd = 3; Mgr_p = std::shared_ptr<LibLSS::FFTW_Manager<double, 3> >] 1 0.0034003
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/tools/mpi/ghost_planes.hpp]void LibLSS::GhostPlanes<T, Nd>::setup(LibLSS::MPI_Communication*, PlaneList&&, PlaneSet&&, DimList&&, size_t) [with PlaneList = std::set<long int>&; PlaneSet = std::set<long int>&; DimList = std::array<long int, 2>&; T = std::complex<double>; long unsigned int Nd = 2; size_t = long unsigned int] 1 0.00338329
|
||||
dispatch_plane_map 1 0.00333988
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/borg_lpt.cpp]std::shared_ptr<LibLSS::BORGForwardModel> build_borg_lpt(std::shared_ptr<LibLSS::MPI_Communication>, const LibLSS::BoxModel&, const LibLSS::PropertyProxy&) [with Grid = LibLSS::ClassicCloudInCell<double>; LibLSS::BoxModel = LibLSS::NBoxModel<3>] 1 0.00264381
|
||||
BorgLptModel::BorgLptModel 1 0.00258427
|
||||
Classic CIC adjoint-interpolation 18 0.00243702
|
||||
ghost synchronize 1282 0.00235298
|
||||
particle distribution 2565 0.00232546
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/model_io.cpp]void LibLSS::detail_input::ModelInputBase<Nd, Super>::needDestroyInput() [with long unsigned int Nd = 3; Super = LibLSS::detail_model::ModelIO<3>] 1282 0.00174796
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/class_cosmo.cpp]void LibLSS::ClassCosmo::retrieve_Tk(double) 2 0.00143746
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/class_cosmo.cpp]void LibLSS::ClassCosmo::reinterpolate(const array_ref_1d&, const array_ref_1d&, LibLSS::internal_auto_interp::auto_interpolator<double>&) 6 0.00127092
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/adapt_generic_bias.cpp]void {anonymous}::bias_registrator() 1 0.00125063
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forward_model.cpp]void LibLSS::BORGForwardModel::setupDefault() 1 0.0010723
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/samplers/core/gridLikelihoodBase.cpp]LibLSS::GridDensityLikelihoodBase<Dims>::GridDensityLikelihoodBase(LibLSS::MPI_Communication*, const GridSizes&, const GridLengths&) [with int Dims = 3; GridSizes = std::array<long unsigned int, 3>; GridLengths = std::array<double, 3>] 1 0.000721845
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/primordial_as.cpp]virtual void LibLSS::ForwardPrimordial_As::updateCosmo() 10 0.000559358
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/hermitic.hpp]virtual void LibLSS::ForwardHermiticOperation::getAdjointModelOutput(LibLSS::detail_output::ModelOutputAdjoint<3>) 1 0.000524894
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/tools/hermiticity_fixup.cpp]typename std::enable_if<(Dim != 1), void>::type adjoint_fix_plane(Mgr&, CArray&&, size_t*) [with long unsigned int rank = 0; Mgr = LibLSS::FFTW_Manager<double, 3>; CArray = boost::detail::multi_array::multi_array_view<std::complex<double>, 2>; long unsigned int Dim = 2; typename std::enable_if<(Dim != 1), void>::type = void; size_t = long unsigned int] 2 0.000443373
|
||||
Classic CIC interpolation 3 0.000410194
|
||||
BorgLptModel::~BorgLptModel 1 0.00018844
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/python/pyforward.cpp]void do_get_adjoint_model(LibLSS::BORGForwardModel*, pybind11::array) 1 0.000186842
|
||||
BORGForwardModel::setup 8 0.000177922
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/lpt/borg_fwd_lpt_adj.cpp]void LibLSS::BorgLptModel<CIC>::adjointModelParticles(LibLSS::BORGForwardModelTypes::PhaseArrayRef&, LibLSS::BORGForwardModelTypes::PhaseArrayRef&) [with CIC = LibLSS::ClassicCloudInCell<double>; LibLSS::BORGForwardModelTypes::PhaseArrayRef = boost::multi_array_ref<double, 2>] 1 0.00013868
|
||||
BORG adjoint model 1 0.000106633
|
||||
Classic CIC adjoint-projection 1 8.2392e-05
|
||||
exchanging nearby planes before taking adjoint gradient 6 8.2354e-05
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/lpt/borg_fwd_lpt_adj.cpp]void LibLSS::BorgLptModel<CIC>::preallocate() [with CIC = LibLSS::ClassicCloudInCell<double>] 2 7.5163e-05
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/primordial_as.cpp]std::shared_ptr<LibLSS::BORGForwardModel> build_primordial_as(std::shared_ptr<LibLSS::MPI_Communication>, const LibLSS::BoxModel&, const LibLSS::PropertyProxy&) 1 7.2877e-05
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/transfer_class.cpp]std::shared_ptr<LibLSS::BORGForwardModel> build_class(std::shared_ptr<LibLSS::MPI_Communication>, const LibLSS::BoxModel&, const LibLSS::PropertyProxy&) 1 7.2711e-05
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/chain_forward_model.cpp]virtual void LibLSS::ChainForwardModel::getAdjointModelOutput(LibLSS::detail_output::ModelOutputAdjoint<3>) 1 6.745e-05
|
||||
Initializing peer system 14 6.3955e-05
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/primordial_as.cpp]void LibLSS::ForwardPrimordial_As::updatePower() 5 4.8762e-05
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/python/pyforward.cpp]void transfer_in(std::shared_ptr<LibLSS::FFTW_Manager<double, 3> >&, T&, U&, bool) [with T = boost::multi_array_ref<double, 3>; U = pybind11::detail::unchecked_reference<double, 3>] 1 3.5512e-05
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/transfer_class.cpp]virtual void LibLSS::ForwardClass::setModelParams(const LibLSS::ModelDictionnary&) 1 2e-05
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/transfer_class.cpp]virtual void LibLSS::ForwardClass::adjointModel_v2(LibLSS::detail_input::ModelInputAdjoint<3>) 1 1.5583e-05
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/primordial_as.cpp]virtual void LibLSS::ForwardPrimordial_As::adjointModel_v2(LibLSS::detail_input::ModelInputAdjoint<3>) 1 1.3838e-05
|
||||
gather_peer_by_plane 1 1.0897e-05
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/lpt/borg_fwd_lpt_adj.cpp]void LibLSS::BorgLptModel<CIC>::clearAdjointGradient() [with CIC = LibLSS::ClassicCloudInCell<double>] 1 3.816e-06
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forward_model.cpp]virtual void LibLSS::ForwardModel::setModelParams(const LibLSS::ModelDictionnary&) 1 2.816e-06
|
||||
distribute_particles_ag 2 1.678e-06
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forward_model.cpp]void LibLSS::ForwardModel::setCosmoParams(const LibLSS::CosmologicalParameters&) 34 2.57512
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/borg_lpt.cpp]std::shared_ptr<LibLSS::BORGForwardModel> build_borg_lpt(std::shared_ptr<LibLSS::MPI_Communication>, const LibLSS::BoxModel&, const LibLSS::PropertyProxy&) [with Grid = LibLSS::ClassicCloudInCell<double>; LibLSS::BoxModel = LibLSS::NBoxModel<3>] 1 2.08847
|
||||
BorgLptModel::BorgLptModel 1 2.08788
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forward_model.cpp]void LibLSS::BORGForwardModel::setupDefault() 1 2.07805
|
||||
FFTW_Manager::create_r2c_plan 7 1.13805
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/borg_lpt.cpp]void LibLSS::BorgLptModel<CIC>::updateCosmo() [with CIC = LibLSS::ClassicCloudInCell<double>] 5 1.03688
|
||||
lightcone computation 1 1.01288
|
||||
FFTW_Manager::create_c2r_plan 6 0.994615
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/cosmo.cpp]void LibLSS::Cosmology::precompute_d_plus() 1 0.917438
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/primordial_as.cpp]std::shared_ptr<LibLSS::BORGForwardModel> build_primordial_as(std::shared_ptr<LibLSS::MPI_Communication>, const LibLSS::BoxModel&, const LibLSS::PropertyProxy&) 1 0.385783
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/transfer_class.cpp]std::shared_ptr<LibLSS::BORGForwardModel> build_class(std::shared_ptr<LibLSS::MPI_Communication>, const LibLSS::BoxModel&, const LibLSS::PropertyProxy&) 1 0.38134
|
||||
CICModel::getVelocityField 1 0.381026
|
||||
Classic CIC projection 5 0.346875
|
||||
CICModel::getVelocityFieldAlpha 3 0.289289
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/transfer_class.cpp]virtual void LibLSS::ForwardClass::updateCosmo() 5 0.237377
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/class_cosmo.cpp]LibLSS::ClassCosmo::ClassCosmo(const LibLSS::CosmologicalParameters&, unsigned int, double, std::string, unsigned int, const std::map<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >&) 1 0.227272
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/chain_forward_model.cpp]virtual void LibLSS::ChainForwardModel::forwardModel_v2(LibLSS::detail_input::ModelInput<3>) 1 0.110549
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/cosmo.cpp]void LibLSS::Cosmology::precompute_com2a() 1 0.0689217
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/lpt/borg_fwd_lpt.cpp]void LibLSS::BorgLptModel<CIC>::getDensityFinal(LibLSS::detail_output::ModelOutput<3>) [with CIC = LibLSS::ClassicCloudInCell<double>] 1 0.0646358
|
||||
BORG LPT MODEL 1 0.0386933
|
||||
BORG forward model 1 0.0373443
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/primordial_as.cpp]virtual void LibLSS::ForwardPrimordial_As::updateCosmo() 10 0.0132038
|
||||
lpt_ic 1 0.0129245
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/primordial_as.cpp]void LibLSS::ForwardPrimordial_As::updatePower() 5 0.0126693
|
||||
FFTW_Manager::execute_c2r 7 0.00893392
|
||||
FFTW_Manager::execute_r2c 4 0.00713005
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/samplers/core/gridLikelihoodBase.cpp]LibLSS::GridDensityLikelihoodBase<Dims>::GridDensityLikelihoodBase(LibLSS::MPI_Communication*, const GridSizes&, const GridLengths&) [with int Dims = 3; GridSizes = std::array<long unsigned int, 3>; GridLengths = std::array<double, 3>] 1 0.00538298
|
||||
FFTW_Manager::destroy_plan 12 0.00456276
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/tools/hermiticity_fixup.cpp]LibLSS::Hermiticity_fixer<T, Nd>::Hermiticity_fixer(Mgr_p) [with T = double; long unsigned int Nd = 3; Mgr_p = std::shared_ptr<LibLSS::FFTW_Manager<double, 3> >] 1 0.00376522
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/tools/mpi/ghost_planes.hpp]void LibLSS::GhostPlanes<T, Nd>::setup(LibLSS::MPI_Communication*, PlaneList&&, PlaneSet&&, DimList&&, size_t) [with PlaneList = std::set<long int>&; PlaneSet = std::set<long int>&; DimList = std::array<long int, 2>&; T = std::complex<double>; long unsigned int Nd = 2; size_t = long unsigned int] 1 0.0037254
|
||||
dispatch_plane_map 1 0.00349579
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/particle_balancer/balanceinfo.hpp]void LibLSS::BalanceInfo::allocate(LibLSS::MPI_Communication*, size_t) 2 0.00317642
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/hermitic.hpp]virtual void LibLSS::ForwardHermiticOperation::getDensityFinal(LibLSS::detail_output::ModelOutput<3>) 1 0.00280722
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/python/pyforward.cpp]void transfer_in(std::shared_ptr<LibLSS::FFTW_Manager<double, 3> >&, T&, U&, bool) [with T = boost::multi_array_ref<std::complex<double>, 3>; U = pybind11::detail::unchecked_reference<std::complex<double>, 3>] 1 0.00212912
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/python/pyforward.cpp]void do_get_density_final(LibLSS::BORGForwardModel*, pybind11::array) 1 0.00185894
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/class_cosmo.cpp]void LibLSS::ClassCosmo::retrieve_Tk(double) 2 0.00141643
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/adapt_generic_bias.cpp]void {anonymous}::bias_registrator() 1 0.00135291
|
||||
BorgLptModel::~BorgLptModel 1 0.00134733
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/class_cosmo.cpp]void LibLSS::ClassCosmo::reinterpolate(const array_ref_1d&, const array_ref_1d&, LibLSS::internal_auto_interp::auto_interpolator<double>&) 6 0.00125166
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/tools/hermiticity_fixup.cpp]void LibLSS::Hermiticity_fixer<T, Nd>::forward(CArrayRef&) [with T = double; long unsigned int Nd = 3; CArrayRef = boost::multi_array_ref<std::complex<double>, 3>] 1 0.000808169
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/tools/hermiticity_fixup.cpp]typename std::enable_if<(Dim != 1), void>::type fix_plane(Mgr&, Ghosts&&, CArray&&, size_t*) [with long unsigned int rank = 0; Mgr = LibLSS::FFTW_Manager<double, 3>; Ghosts = LibLSS::Hermiticity_fixer<double, 3>::forward(CArrayRef&)::<lambda(ssize_t)>; CArray = boost::detail::multi_array::multi_array_view<std::complex<double>, 2>; long unsigned int Dim = 2; typename std::enable_if<(Dim != 1), void>::type = void; size_t = long unsigned int] 2 0.000755922
|
||||
[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/chain_forward_model.cpp]virtual void LibLSS::ChainForwardModel::getDensityFinal(LibLSS::detail_output::ModelOutput<3>) 1 0.000752412
|
||||
exchanging nearby planes after projection 4 0.000681672
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/model_io.cpp]LibLSS::detail_output::ModelOutputBase<Nd, Super>::~ModelOutputBase() [with long unsigned int Nd = 3; Super = LibLSS::detail_model::ModelIO<3>] 17 0.00031809
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BORGForwardModel::setup 8 0.000195441
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gather_peer_by_plane 1 0.000147003
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/model_io.cpp]void LibLSS::detail_output::ModelOutputBase<Nd, Super>::transfer(LibLSS::detail_output::ModelOutputBase<Nd, Super>&&) [with long unsigned int Nd = 3; Super = LibLSS::detail_model::ModelIO<3>] 11 0.000116935
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Initializing peer system 14 7.2966e-05
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/model_io/base.hpp]void LibLSS::detail_model::ModelIO<Nd>::transfer(LibLSS::detail_model::ModelIO<Nd>&&) [with long unsigned int Nd = 3] 29 2.9749e-05
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/model_io.cpp]void LibLSS::detail_output::ModelOutputBase<Nd, Super>::close() [with long unsigned int Nd = 3; Super = LibLSS::detail_model::ModelIO<3>] 17 2.0688e-05
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/transfer_class.cpp]virtual void LibLSS::ForwardClass::setModelParams(const LibLSS::ModelDictionnary&) 1 1.9715e-05
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/transfer_class.cpp]virtual void LibLSS::ForwardClass::forwardModel_v2(LibLSS::detail_input::ModelInput<3>) 1 1.7707e-05
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forwards/primordial_as.cpp]virtual void LibLSS::ForwardPrimordial_As::forwardModel_v2(LibLSS::detail_input::ModelInput<3>) 1 1.6895e-05
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ghost synchronize 1 1.2845e-05
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particle distribution 2 8.438e-06
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/model_io.cpp]void LibLSS::detail_output::ModelOutputBase<Nd, Super>::setRequestedIO(LibLSS::PreferredIO) [with long unsigned int Nd = 3; Super = LibLSS::detail_model::ModelIO<3>] 5 6.215e-06
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/model_io.cpp]void LibLSS::detail_input::ModelInputBase<Nd, Super>::setRequestedIO(LibLSS::PreferredIO) [with long unsigned int Nd = 3; Super = LibLSS::detail_model::ModelIO<3>] 4 5.24e-06
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/forward_model.cpp]virtual void LibLSS::ForwardModel::setModelParams(const LibLSS::ModelDictionnary&) 1 2.907e-06
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[/build/jenkins/miniconda3/envs/builder/conda-bld/aquila_borg_1717878335917/work/libLSS/physics/model_io.cpp]void LibLSS::detail_input::ModelInputBase<Nd, Super>::needDestroyInput() [with long unsigned int Nd = 3; Super = LibLSS::detail_model::ModelIO<3>] 1 2.668e-06
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