csiborgtools/notebooks/field_prop.ipynb
Richard Stiskalek 9e4b34f579
Overlap fixing and more (#107)
* Update README

* Update density field reader

* Update name of SDSSxALFAFA

* Fix quick bug

* Add little fixes

* Update README

* Put back fit_init

* Add paths to initial snapshots

* Add export

* Remove some choices

* Edit README

* Add Jens' comments

* Organize imports

* Rename snapshot

* Add additional print statement

* Add paths to initial snapshots

* Add masses to the initial files

* Add normalization

* Edit README

* Update README

* Fix bug in CSiBORG1 so that does not read fof_00001

* Edit README

* Edit README

* Overwrite comments

* Add paths to init lag

* Fix Quijote path

* Add lagpatch

* Edit submits

* Update README

* Fix numpy int problem

* Update README

* Add a flag to keep the snapshots open when fitting

* Add a flag to keep snapshots open

* Comment out some path issue

* Keep snapshots open

* Access directly snasphot

* Add lagpatch for CSiBORG2

* Add treatment of x-z coordinates flipping

* Add radial velocity field loader

* Update README

* Add lagpatch to Quijote

* Fix typo

* Add setter

* Fix typo

* Update README

* Add output halo cat as ASCII

* Add import

* Add halo plot

* Update README

* Add evaluating field at radial distanfe

* Add field shell evaluation

* Add enclosed mass computation

* Add BORG2 import

* Add BORG boxsize

* Add BORG paths

* Edit run

* Add BORG2 overdensity field

* Add bulk flow clauclation

* Update README

* Add new plots

* Add nbs

* Edit paper

* Update plotting

* Fix overlap paths to contain simname

* Add normalization of positions

* Add default paths to CSiBORG1

* Add overlap path simname

* Fix little things

* Add CSiBORG2 catalogue

* Update README

* Add import

* Add TNG density field constructor

* Add TNG density

* Add draft of calculating BORG ACL

* Fix bug

* Add ACL of enclosed density

* Add nmean acl

* Add galaxy bias calculation

* Add BORG acl notebook

* Add enclosed mass calculation

* Add TNG300-1 dir

* Add TNG300 and BORG1 dir

* Update nb
2024-01-30 16:14:07 +00:00

4.8 KiB

In [1]:
import matplotlib.pyplot as plt
import numpy
import scienceplots
from h5py import File

import plt_utils


%load_ext autoreload
%autoreload 2
In [12]:
with File("/mnt/extraspace/rstiskalek/csiborg_postprocessing/ACL/BORG2_0.25.hdf5", 'r') as f:
    voxel_acl = f['voxel_acl'][...].flatten()
    voxel_dist = f['voxel_dist'][...].flatten()
In [28]:
bins = numpy.linspace(0, 100, 10)


plt.figure()

mask = voxel_dist < 20
plt.hist(voxel_acl[mask], bins="auto", histtype='step', density=1, label=r"$0 < R / (\mathrm{Mpc} / h)  < 20$")

mask = (voxel_dist > 20) & (voxel_dist < 40)
plt.hist(voxel_acl[mask], bins="auto", histtype='step', density=1, label=r"$20 < R / (\mathrm{Mpc} / h)  < 40$")

mask = (voxel_dist > 40) & (voxel_dist < 60)
plt.hist(voxel_acl[mask], bins="auto", histtype='step', density=1, label=r"$40 < R / (\mathrm{Mpc} / h)  < 60$")

# plt.scatter(voxel_dist.flatten(), voxel_acl.flatten(), s=0.1)
plt.legend()
plt.title("ACL of individual voxels")
plt.xlabel(r"$\mathrm{ACL}$")
plt.ylabel(r"Normalized bin counts")

plt.tight_layout()
plt.savefig("../plots/BORG_Stephen_ACL.png", dpi=450)
plt.show()
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In [ ]: