Commit graph

4 commits

Author SHA1 Message Date
Richard Stiskalek
e972f8e3f2
Add pynbody and other support (#92)
* Simplify box units

* Move old scripts

* Add printing

* Update readers

* Disable boundscheck

* Add new ordering

* Clean up imports

* Enforce dtype and add mass to quijote

* Simplify print statements

* Fix little typos

* Fix key bug

* Bug fixing

* Delete boring comments

* Improve ultimate clumps for PHEW

* Delete boring comments

* Add basic reading

* Remove 0th index HID

* Add flipping of X and Z

* Updates to halo catalogues

* Add ordered caching

* Fix flipping

* Add new flags

* Fix PHEW empty clumps

* Stop over-wrriting

* Little improvements to angular neighbours

* Add catalogue masking

* Change if-else statements

* Cache only filtered data

* Add PHEW cats

* Add comments

* Sort imports

* Get Quijote workign

* Docs

* Add HMF calculation

* Move to old

* Fix angular

* Add great circle distance

* Update imports

* Update impotrts

* Update docs

* Remove unused import

* Fix a quick bug

* Update compatibility

* Rename files

* Renaming

* Improve compatiblity

* Rename snapsht

* Fix snapshot bug

* Update interface

* Finish updating interface

* Update all paths

* Add old scripts

* Add basic halo

* Update imports

* Improve snapshot processing

* Update ordering

* Fix how CM positions accessed

* Add merger paths

* Add imports

* Add merger reading

* Add making a merger tree

* Add a basic merger tree reader

* Add imports

* Add main branch walking + comments + debuggin

* Get tree running

* Add working merger tree walking along main branch

* Add units conversion for merger data

* Add hid_to_array_index

* Update merger tree

* Add mergertree mass to PHEWcat

* Edit comments

* Add this to track changes...

* Fix a little bug

* Add mergertree mass

* Add cache clearing

* Improve summing substructure code

* Littbe bug

* Little updates to the merger tree reader

* Update .giignore

* Add box selection

* Add optional deletingf of a group

* add to keep track of changes

* Update changes

* Remove

* Add manual tracker

* Fix bug

* Add m200c_to_r200c

* Add manual halo tracking

* Remove skipped snapshots

* update cosmo params to match csiborg

* remove old comments

* Add SDSSxALFALFA

* Fix bugs

* Rename

* Edit paths

* Updates

* Add comments

* Add comment

* Add hour conversion

* Add imports

* Add new observation class

* Add selection

* Add imports

* Fix small bug

* Add field copying for safety

* Add matching to survey without masking

* Add P(k) calculation

* Add nb

* Edit comment

* Move files

* Remove merger import

* Edit setup.yp

* Fix typo

* Edit import warnigns

* update nb

* Update README

* Update README

* Update README

* Add skeleton

* Add skeleton
2023-12-07 14:23:32 +00:00
Richard Stiskalek
35ccfb5c67
New matches (#69)
* Remove old file

* Add velocity plotting

* add smooth scale

* Fix bug

* Improve paths

* Edit plotting

* Add smoothed density

* Update boundaries

* Add basics

* Further docs

* Remove blank

* Better catalog broadcasting

* Update high res size

* Update plotting routines

* Update routine

* Update plotting

* Fix field saving name

* Add better colormap for environemnt
2023-06-17 19:52:26 +01:00
Richard Stiskalek
ccbbbd24b4
Add better diagnostics & plotting (#67)
* Add caching functions

* Add limts

* Add new mass runs

* Update .gitignore

* Edit which CDFs are loaded

* Stop saving cross hindxs

* Change dist to half precision

* New nearest path

* Add neighbour counting

* Add neighbour kwargs

* Update work in progress

* Add new counting

* Add how dist is built

* Collect dist to 1 file

* Update reading routine

* Delete Quijote files

* Remove file

* Back to float32

* Fix bugs

* Rename utils

* Remove neighbuor kwargs

* Rename file

* Fix bug

* Rename plt utils

* Change where nghb kwargs from

* line length

* Remove old notebooks

* Move survey

* Add white space

* Update TODO

* Update CDF calculation

* Update temporarily plotting

* Merge branch 'add_diagnostics' of github.com:Richard-Sti/csiborgtools into add_diagnostics

* Start adding documentation to plotting

* Remove comments

* Better code documentation

* Some work on tidal tensor

* Better plotting

* Add comment

* Remove nb

* Remove comment

* Add documentation

* Update plotting

* Update submission

* Update KL vs KS plots

* Update the plotting routine

* Update plotting

* Update plotting routines
2023-06-16 14:33:27 +01:00
Richard Stiskalek
2185846e90
CDF for nearest neighbour (#63)
* Updat ebounds

* fix mistake

* add plot script

* fix which sims

* Add Poisson

* Just docs

* Hide things to __main__

* Rename paths

* Move old script

* Remove radpos

* Paths renaming

* Paths renaming

* Remove trunk stuff

* Add import

* Add nearest neighbour search

* Add Quijote fiducial indices

* Add final snapshot matching

* Add fiducial observer selection

* add boxsizes

* Add reading functions

* Little stuff

* Bring back the fiducial observer

* Add arguments

* Add quijote paths

* Add notes

* Get this running

* Add yaml

* Remove Poisson stuff

* Get the 2PCF script running

* Add not finished htings

* Remove comment

* Verbosity only on 0th rank!

* Update plotting style

* Add nearest neighbour CDF

* Save radial distance too

* Add centres

* Add basic plotting
2023-05-21 22:46:28 +01:00