14 commits

Author	SHA1	Message	Date
rstiskalek	d4f89fc343	optionally return counts as well	2022-11-06 20:58:57 +00:00
rstiskalek	e4ec1c4daa	rm unused functions	2022-11-06 20:55:34 +00:00
rstiskalek	364f3b2137	rm blank	2022-11-06 10:06:48 +00:00
rstiskalek	859e3f4eb2	change density to mass/mpc^3	2022-11-06 10:06:40 +00:00
rstiskalek	0baa81a4f4	centre coords at 0	2022-11-06 09:06:03 +00:00
rstiskalek	1cd3f10848	add num density	2022-11-06 09:05:51 +00:00
rstiskalek	3979650663	add boxunits transform on array	2022-11-06 06:32:28 +00:00
Richard Stiskalek	7f58b1f78c	JAX and fix conc (#6) ... * change to log10 initlogRs * add uncertainty * add check if hessian negative * update TODO * update TODO * output the error too * save e_logRs * add concentration calculation * calcul concentration * missed comma in a list * Update TODO * fix bug * add box units and pretty status * make uncertainty optional * add BIC function * remove BIC again * add new overdensity calculation * change defualt values to max dist and mass * change to r200 * new halo find * speed up the calculation * add commented fucn * update TODO * add check whether too close to outside boundary * Update TODO * extract velocity as well * calculate m200 and m500 * update nb * update TODO	2022-11-05 21:17:05 +00:00
Richard Stiskalek	ba98ecc299	Mass enclosed in a sphere calculation (#5) ... * rename nb * add merge func * rm bug.. * add static methods * save rmin, rmax * add properties for box units * move radial info to the clump * add Npart explicit * move where rmin, rmax obtained * add box cosmo * add __getattr__ * add comments in units * add enclosed spherical mass * rm unused variables * add clump mass setter * add the halo index * add enclosed overdensity * add enclosed_overdensity * simplify loss func * opt result to nan * change Rs to log10 * change back to attribs * add H0 and h props * add setattrs * Remove global constants * move Msuncgs above * add crit density * add dots * add r200c and r500c * add M200 and M500 * make lowercase * output r200, r500, m200, m500 * update TODO * update README * fit NFW only up to r200 * add r178, m178 * add m178, r178 * update TODO	2022-11-01 10:10:54 +00:00
Richard Stiskalek	8a56c22813	Within halo work and NFW fit (#4) ... * add listing of snapshots * change distance to comoving * ignore cp files * rename nb * add str to list * add NFW profile shapes * add fits imports * Rename to Nsnap * in clumps_read only select props * make clumpid int * expand doc * add import * edit readme * distribute halos * add profile & posterior * add import * add import * add documentation * add rvs and init guess * update todo * update nb * add file * return end index too * change clump_ids format to int32 * skeleton of dump particle * update nb * add func to drop 0 clump indxs parts * add import * add halo dump * switch to float32 * Update TODO * update TODO * add func that loads a split * add halo object * Rename to clump * make post work with a clump * add optimiser * add Nsplits * ignore submission scripts * ignore .out * add dumppath * add job splitting * add split halos script * rename file * renaem files * rm file * rename imports * edit desc * add pick clump * add number of particles * update TODO * update todo * add script * add dumping * change dumpdir structure * change dumpdir * add import * Remove tqdm * Increase the number of splits * rm shuffle option * Change to remove split * add emojis * fix part counts in splits * change num of splits * rm with particle cut * keep splits * fit only if 10 part and more * add min distance * rm warning about not set vels * update TODO * calculate rho0 too * add results collection * add import * add func to combine splits * update TODO * add extract cols * update nb * update TODO	2022-10-30 20:16:56 +00:00
rstiskalek	85a6a6d58a	comment out correlation import	2022-10-21 20:00:30 +01:00
rstiskalek	ba15264eb8	Add docs	2022-10-21 19:58:59 +01:00
rstiskalek	dd34036219	rename	2022-10-21 17:06:29 +01:00
rstiskalek	a9e98f5a2d	Rename repo	2022-10-20 23:34:14 +01:00