Commit graph

16 commits

Author SHA1 Message Date
rstiskalek
36f4177f6b Add some blank spaces 2023-08-08 11:48:31 +01:00
rstiskalek
7ef36c7ac0 Add mass to name 2023-08-08 11:46:56 +01:00
Richard Stiskalek
c7b600d0ad
Periodic neighbours (#84)
* Edit the HMF plot

* Add periodic dist 2 points

* Add boxsize to RVSSphere

* Add periodic distance

* Adding periodic distance

* Add imports

* Change arguments

* Update bounds

* Lower min number of particles

* Change kwargs

* Add paths overlap quijote

* Add some comments
2023-08-08 12:19:40 +02:00
Richard Stiskalek
344ff8e091
Fixing overlaps and halo definitions. (#80)
* Add imports

* Refactor code

* Rename fof velocities

* Clean up and add Quijote

* Edit docstrings

* Update submission script

* Fix bug

* Start loading fitted properties

* Edit docstrings

* Update fitting for new `halo`

* Update CM definition and R200c

* Tune the minimum number of particles

* Enforce crossing threshold & tune hypers

* Fix periodiity when calculating angmom

* Doc strings

* Relax checkip

* Minor edit

* Fix old kwarg bug

* Fix CSiBORG bounds

* Catch warnings!

* Add `mass_kind` and new boundaries
2023-07-31 16:13:21 +02:00
Richard Stiskalek
fb4b4edf19
Quijote snapshots support (#77)
* Renaming

* Edit docs

* Delete old function

* Add a blank space

* Rename particle reader

* Add comments

* Rename

* Rename

* edit get_snapshots

* More renaming

* Remove old correction

* Add import

* Add basics of the Quijote reader

* Add a blank space

* Fix paths

* Rename function

* Fix HID and path

* Add more FoF reading

* Move definition

* Adding arguments

* Renaming

* Add kwargs for backward comp

* FoF Quijote return only hids

* Add sorting of quijote

* Add path to CSiBORG ICs snapshot

* Add support for Quijote

* initmatch paths for quijote

* Add kwargs

* Fix blank lines

* Rename kwarg

* Remove unused import

* Remove hardcoded numbers

* Update for Quijote

* Do not store velocities in QUijote ICs

* Box units mass Quijote

* Fix typo

* Ensure particles are not right at the edge

* Add structfit paths for QUuijote

* Basic CSiBORG units

* Add more quijote halo reading

* Add Quijote fitting

* Docs changes

* Docs changes
2023-07-27 18:41:00 +02:00
Richard Stiskalek
eb8d070fff
CSiBORG FoF switch (#75)
* Add moving FoF membership files

* add FoF membership path

* Add notes where its PHEW

* Add FoF catalogue path

* Correct typo

* Add more functionalities

* Make work with halo IDs from FoF

* Edit print statement

* Fix copy bug

* copy

* Add FoF catalogue reading

* Clean up script

* Fix typo

* Little edits

* Fix naming convention

* Rename key

* Remove loading substructure particles

* Rename CSiBORG Cat

* Rename clumps cat

* Rename cat

* Remove misplaced import

* Switch to halos

* rm import

* structfit of only halos

* Add FoF halo reading

* Add a short comment

* Fix __getitem__ to work with int

* Fix problems

* Improve __getitem__

* Add more conversion

* Fix indexing

* Fix __getitem__ assertion

* Fix numbers

* Rename

* Fix verbosity flags

* Add full Quijote HMF option

* Add plot of Quijote only

* Add quijote full paths

* Fix the fit_init script

* Renam arg

* Update .gitignore

* add default argument name

* Change default verbosity flag

* Modernise script structure

* Fix dictionary

* Fix reading to include m200c

* Modernise script

* Add args
2023-07-24 14:10:21 +02:00
Richard Stiskalek
2185846e90
CDF for nearest neighbour (#63)
* Updat ebounds

* fix mistake

* add plot script

* fix which sims

* Add Poisson

* Just docs

* Hide things to __main__

* Rename paths

* Move old script

* Remove radpos

* Paths renaming

* Paths renaming

* Remove trunk stuff

* Add import

* Add nearest neighbour search

* Add Quijote fiducial indices

* Add final snapshot matching

* Add fiducial observer selection

* add boxsizes

* Add reading functions

* Little stuff

* Bring back the fiducial observer

* Add arguments

* Add quijote paths

* Add notes

* Get this running

* Add yaml

* Remove Poisson stuff

* Get the 2PCF script running

* Add not finished htings

* Remove comment

* Verbosity only on 0th rank!

* Update plotting style

* Add nearest neighbour CDF

* Save radial distance too

* Add centres

* Add basic plotting
2023-05-21 22:46:28 +01:00
Richard Stiskalek
255bec9710
Quijote kNN adding (#62)
* Fix small bug

* Add fiducial observers

* Rename 1D knn

* Add new bounds system

* rm whitespace

* Add boudns

* Add simname to paths

* Add fiducial obserevrs

* apply bounds only if not none

* Add TODO

* add simnames

* update script

* Fix distance bug

* update yaml

* Update file reading

* Update gitignore

* Add plots

* add check if empty list

* add func to obtaining cross

* Update nb

* Remove blank lines

* update ignroes

* loop over a few ics

* update gitignore

* add comments
2023-05-15 23:30:10 +01:00
Richard Stiskalek
1d847cbd06
Add Quijote (#61)
* Rename paths object

* Remove redshift calculation

* Explicit keywrod arg

* Rename box units

* Basic renaming

* Little docs

* Rename paths

* add imports

* Sort imports

* Add Quijote cat

* Split boxes

* add Quijote path

* Add origin argument

* Update nbs
2023-05-13 17:37:34 +01:00
rstiskalek
26ef1661a4 Add verbosity flag 2023-05-09 17:43:18 +01:00
Richard Stiskalek
b710b8e89c
Add new ICs (#59)
* edit IC paths

* Remove import

* Edit path

* Change naming

* Add __main__

* Script to match everything

* Edit docs

* Remove test statement

* Move import

* Update nb
2023-05-09 16:18:01 +01:00
Richard Stiskalek
51b670d30b
Updates to the overlap reader. (#54)
* Flag for loading clumps_cat

* Optionally load clumps catalogues

* Update single pair reading

* Edit reading many pairs
2023-05-07 16:34:55 +01:00
Richard Stiskalek
56e39a8b1d
Overlapper improvements (#53)
* Store indices as f32

* Fix init sorting

* Organise imports

* Rename pathing

* Add particle loading

* Improve particle reading

* Add h5py reader

* edit particle path

* Update particles loading

* update particles loading

* Fix particle dumping

* Add init fitting

* Fix bug due to insufficient precision

* Add commnet

* Add comment

* Add clumps catalogue to halo cat

* Add comment

* Make sure PIDS never forced to float32

* fix pid reading

* fix pid reading

* Update matching to work with new arrays

* Stop using cubical sub boxes, turn off nshift if no smoothing

* Improve caching

* Move function definitions

* Simplify calculation

* Add import

* Small updates to the halo

* Simplify calculation

* Simplify looping calculation

* fix tonew

* Add initial data

* Add skip condition

* Add unit conversion

* Add loading background in batches

* Rename mmain index

* Switch overlaps to h5

* Add finite lagpatch check

* fix column name

* Add verbosity flags

* Save halo IDs instead.

* Switch back to npz

* Delte nbs

* Reduce size of the box

* Load correct bckg of halos being matched

* Remove verbosity

* verbosity edits

* Change lower thresholds
2023-05-06 16:52:48 +01:00
Richard Stiskalek
f48eb6dcb0
Dump radial profile information (#48)
* add radial position path

* pep8

* Add basic fit profile dumping

* pep8

* pep8

* pep8

* pep8

* pep8

* pep8

* Update TODO

* Fix parts is None bug

* Update nb
2023-04-27 00:18:30 +01:00
Richard Stiskalek
04119a5314
Update initial matching & overlaps (#47)
* pep8

* fix convention

* Update script

* enforce optimisation boundaries to be finite

* Update TODO

* Remove sky matching

* FIx a small bug

* fix bug

* Remove import

* Add halo fitted quantities

* Update nbs

* update README

* Add load_initial comments

* Rename nbs

* Delete nb

* Update imports

* Rename function

* Update matcher

* Add overlap paths

* Update the matching script

* Update verbosity

* Add verbosity flags

* Simplify make_bckg_delta

* bug fix

* fix bug
2023-04-21 01:35:06 +02:00
Richard Stiskalek
fdb0df8d4c
Add mmain and other major updates (#44)
* Move paths to a separate file

* Add mmain reader

* Add a verbosity flag

* Fix imports

* Fix bug

* Rename files

* Return ultimate parents

* Add script to generate mmain

* Remove mmain path

* edit path

* Add mmain path

* Change function name

* Rename function

* Turn off verbose

* Fix list requirement

* Edit init match paths

* Fix init pathing

* Edit paths docs

* Edit dumpdir name

* Rename path

* Fix split paths

* Remove unused import

* Add comment

* Update readme

* remove read mmain

* Rename haloatalogue

* Fix minor bugs

* Update nbs

* Add create directory option

* Move split jobs

* Move spliot jobs

* Remove splitting

* Add import

* Edit script

* Deeper split folder

* Fix paths bug

* Rename catalogue

* Rename Catalogue

* Add new clumpread

* Edit paths

* add knn paths

* Update commenting

* Update imports

* Add more conversions

* Update temp file

* Add a note

* Add catalogue

* Cooment

* Update TODO

* Update script

* add nb

* Update

* pep8

* edit paths & pep8

* Fix knn auto paths

* add paths docs

* Add auto and cross knn paths

* Add new paths

* Simplify tpcf reading

* pep8 patch

* update readme

* Update progress

* pep8

* pep8

* pep8

* pep8

* pep8

* pep8

* pep8

* pep8

* pep8

* pep8

* pep8

* pep8

* pep8

* pep8

* pep8

* Pep 8 and restructure

* add lambda spin

* add clump and halo

* add checks

* Edit halo profile fit

* Update gitignore

* backup script
2023-04-18 11:02:36 +02:00
Renamed from scripts/singlematch.py (Browse further)