rstiskalek
b618897869
Update nb
2024-09-17 10:26:48 +01:00
rstiskalek
cced851d4a
Add names
2024-09-17 10:26:24 +01:00
rstiskalek
60ceceb24d
Add void tests
2024-09-17 10:26:04 +01:00
rstiskalek
3b4c32786c
Lagpatch example
2024-09-16 12:39:49 +01:00
Richard Stiskalek
9c1aa26428
Attempt at absolute calibration and more ( #146 )
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* Update nb
* Update defaults
* Add absolute calibration to fpath
* Add basic absolute calibration
* Switch to log density
* Feed in r directly
* Add more complex spacing option
* Update script
* Comment out abs calibration for now
* Update script
* Add MB profile
* Add script
* Update submit for all profiles
* Update
* Add option
* Add iterator over sims
* Update defaults on alpha
* Update script
* Parallelise script
* Switch to feasible init
* Switch to median init
* Add vext option
* Remove file if exists
* Add optional sample_Vext
* Add param
* rm print
* Add more iterator
* Update script
* Update nb
* Update nb
2024-09-16 12:12:32 +02:00
Richard Stiskalek
32e36afdc3
Add CLONES support ( #145 )
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* Add submit script
* Add support for gadget2
* Add OMP
* Lower resolution
* Update resolution again
* Add selection on galactic latitude
* Update name
* Update nb
* Update nb
* Add CLONES params
* Add import
* Add CLONES path
* Add CLONES reader
* Quick fix
* Add CLONES
* Update slice nb
* Update nb
* Update nb
* Tiny updates
* Update nb
* Add name
* Add CLONES support
* Add CF4 field
* Add CLONES
* Update script
* Update nb
* Update nb
2024-09-12 17:04:25 +02:00
Richard Stiskalek
2b938c112c
More flow preparation & Olympics ( #143 )
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* Add more comments
* Add flow paths
* Simplify paths
* Update default arguemnts
* Update paths
* Update param names
* Update some of scipts for reading files
* Add the Mike method option
* Update plotting
* Update fnames
* Simplify things
* Make more default options
* Add print
* Update
* Downsample CF4
* Update numpyro selection
* Add selection fitting nb
* Add coeffs
* Update script
* Add nb
* Add label
* Increase number of steps
* Update default params
* Add more labels
* Improve file name
* Update nb
* Fix little bug
* Remove import
* Update scales
* Update labels
* Add script
* Update script
* Add more
* Add more labels
* Add script
* Add submit
* Update spacing
* Update submit scrips
* Update script
* Update defaults
* Update defaults
* Update nb
* Update test
* Update imports
* Add script
* Add support for Indranil void
* Add a dipole
* Update nb
* Update submit
* Update Om0
* Add final
* Update default params
* Fix bug
* Add option to fix to LG frame
* Add Vext label
* Add Vext label
* Update script
* Rm fixed LG
* rm LG stuff
* Update script
* Update bulk flow plotting
* Update nb
* Add no field option
* Update defaults
* Update nb
* Update script
* Update nb
* Update nb
* Add names to plots
* Update nb
* Update plot
* Add more latex names
* Update default
* Update nb
* Update np
* Add plane slicing
* Add nb with slices
* Update nb
* Update script
* Upddate nb
* Update nb
2024-09-11 08:45:42 +02:00
Richard Stiskalek
3b46f17ead
Combine PV samples ( #139 )
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* Update imports
* Update submission script
* Update script
* Add simulataenous sampling of many catalogues
* Update nb
2024-07-30 17:02:48 +01:00
Richard Stiskalek
b22da9893f
Pantheon+ covariance ( #138 )
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* Add improt
* Add PP reading attempt
* Remoe odd step requirement
* Update script
* Add CF4
* Add CF4
* Fix path bug
* Update scripts
* Update nb
* Update script
2024-07-25 14:53:18 +01:00
Richard Stiskalek
8d49aa071b
More LOS ( #137 )
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* Switch to CB2
* Update for extrapolation
* Add 'nan' extrapolation
* Update nb
* Update submits
* Add Rmax to the models
* Update nb
* Add print statement
* Update script settings
* Update flow model to new method
* Update printing
* Update path
* Update so that it works
* Update nb
* Update submit
* Add Rmin for hollow bulk flows
* Update script
* Update script
* Update scripts back
* Update scripts back
* Fix normalization bug
* Update script
* pep8
2024-07-25 11:48:37 +01:00
Richard Stiskalek
68fbd594cd
Add monopole to VF ( #136 )
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* Add monopole sampling
* Add monopole
* Update script
* Bring back zmax
* Add monopole
* Add condition in case division by 0
* Add monopole to field
* Update nb
* Update script
* Update scripts
* Simplify docs
2024-07-13 21:52:42 +01:00
Richard Stiskalek
43ebf660ee
Update prior in VF ( #135 )
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* Update priors
* Update submit
* Update README
* Relax width of calibration priors
* Relax width of calibration priors
* Update smooth scales
* Update settings
* Update README
* Update submit
* Add names
* Update nb
* Fix bug
* Update script
* Move files
* Small bug fix
* Add script
* Add script
* Add script
* Add more power
* Update script
* Quick fix
* Rm blank line
* Update nb
* Update nb
* Update nb
2024-07-12 15:46:45 +01:00
rstiskalek
9c9c6a78e5
Update nb
2024-07-05 11:28:06 +01:00
rstiskalek
3343863e42
Update nb
2024-07-03 09:51:00 +01:00
rstiskalek
9b8fc5c573
Update params
2024-07-03 09:50:33 +01:00
rstiskalek
cec54ec629
Update params
2024-07-03 09:50:21 +01:00
rstiskalek
4e25091c23
Update bulkflow calculation
2024-07-03 09:50:02 +01:00
Richard Stiskalek
c6f49790bf
Plots of VF ( #134 )
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* Add VF plots
* Update nb
* Add CMB velocity note
* rm nb
* Add option to return alllikelihood
* Add simulation weights
* Update nb
* Add bulkflow
* Update nb
* Add values of beta
* Update imports
* Update imports
* Add paths to Carrick and Lilow fiels
* Add Carrick and Lilow fields
* Add support for more fields
* Update bulkflow comp
* Update nb
* Update script
2024-07-01 11:48:50 +01:00
rstiskalek
19630cbc60
Update nb
2024-06-28 12:44:37 +01:00
Richard Stiskalek
84a1609d77
Add Lilow2024 velocity fields ( #133 )
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* Add Lilow data
* Fix Lilow NaNs
* Update nb
* Update nb
2024-06-28 11:55:42 +01:00
Richard Stiskalek
301ff61e89
Add CF4 mean & std ( #132 )
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* Add observer velocity
* Add radec to supergalactic
* Update script
* Add CF4 params
* Add paths to CF4
* Add CF4 but not sth wrong
* Update nb
* Remove errors
* Update nb
* Update scripts
2024-06-27 15:02:33 +01:00
rstiskalek
76e8f71556
Update nb
2024-06-26 10:46:33 +01:00
Richard Stiskalek
ce55a2b47e
Add marginalization over boxes ( #131 )
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* Parallelize over simulations
* Update docs
* Update dependency
* Update imports
* Add adtitional dependencies
* Update .gitignore
* Update ERADME
* Simplify numpyro GOF
* Speed up GOF
* Deepcopy samples
* Update scripts
* Add GPU acceleration
* Select boxes
* Update script
* Optionally sample beta
* Fix old code
* Simplify code
* Start saving log posterior
* Start popping log_likeliood
* Add imports
* Add converting samples
* Fix sctipt name
* Add evidence with harmonic
* Remove comment
* Update imports
* Update imports so that pylians not required
* Stop requiring Pylians to be installed
* Update submission scripts for loops
* Update nb
* Update nb
* Add Manticore boxes
* Add verbosity flag
* Add bulk flow
* Update script
* Update nb
* Update normalization
* Update submit
* Update nb
2024-06-26 10:43:26 +01:00
Richard Stiskalek
ffaf92cd4b
Add Manticore ( #130 )
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* Add CB2X paths
* Update imports
* Add CB2 params
* Add CB2x fields
* Add CB2X field
* Add parallelized
* Add **kwargs
* Update nb
* Minor updates
2024-06-21 19:21:06 +01:00
Richard Stiskalek
779f2e76ac
Calculate upglade redshifts ( #128 )
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* Update redshift reading
* Add helio to CMB redshift
* Update imports
* Update nb
* Run for Quijote
* Add script
* Update
* Update .gitignore
* Update imports
* Add Peery estimator
* Add bulk flow scripts
* Update typs
* Add comment
* Add blank space
* Update submission script
* Update description
* Add barriers
* Update nb
* Update nb
* Rename script
* Move to old
* Update imports
* Add nb
* Update script
* Fix catalogue key
* Update script
* Update submit
* Update comment
* Update .gitignore
* Update nb
* Update for stationary obsrevers
* Update submission
* Add nb
* Add better verbose control
* Update nb
* Update submit
* Update nb
* Add SN errors
* Add draft of the script
* Update verbosity flags
* Add submission script
* Debug script
* Quickfix
* Remove comment
* Update nb
* Update submission
* Update nb
* Processed UPGLADE
2024-06-20 14:33:00 +01:00
rstiskalek
c447d2e7b0
Add nbs
2024-05-09 16:29:34 +01:00
rstiskalek
b7d8d3da4d
Add nb
2024-05-09 16:29:22 +01:00
rstiskalek
13a10ccedd
pep8
2024-04-23 12:03:47 +01:00
Richard Stiskalek
c4557cf35b
Matching of observations ( #127 )
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* Rename file
* Add indents
* Update imports
* Add counting
* Docs
* Add nb
* Rename nb
* Update nb
* Add PV processing
* Update nb
* Add Pantheon+groups
* Update submission scripts
* Add Pantheon+zSN
* Update nb
* Edit param
* Matchin SFI
* Update nb
* Fix path bug
* Add list of clusters
* Update imports
* Update imports
* Add cartesian & mass of clusters
* Add observation to halo matching
* Add nb
* Add inverse CDF
* Add import
* Update nb
* Add comments
2024-04-23 12:02:09 +01:00
Richard Stiskalek
3876985f26
Extend enclosed density to all CB2 ( #126 )
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* Add borg2 flag
* add borg2_all
* Undo a comment?
* ADd borg2
* Update notebook
* Update nb
* Add external halo catalogue
* Add MDPL2
* Add BORG2 density profile plot
* Add more params
* Add comments
2024-04-10 11:34:07 +02:00
rstiskalek
7330e535f7
Update notebook
2024-04-08 23:14:43 +01:00
rstiskalek
096f2055c9
Add MDPL2 HMF
2024-04-08 10:39:41 +01:00
Richard Stiskalek
ee222cd010
Fix overlap runs ( #125 )
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* Update nb
* Update script
* Update script
* Rename
* Update script
* Update script
* Remove warning
* Ignore minors when extracting MAH
* Fix paths bug
* Move notebooks
* Move files
* Rename and delete things
* Rename file
* Move file
* Rename things
* Remove old print statement
* Add basic MAH plot
* Add random MAH path
* Output snapshot numbers
* Add MAH random extraction
* Fix redshift bug
* Edit script
* Add extracting random MAH
* Little updates
* Add CB2 redshift
* Add some caching
* Add diagnostic plots
* Add caching
* Minor updates
* Update nb
* Update notebook
* Update script
* Add Sorce randoms
* Add CB2 varysmall
* Update nb
* Update nb
* Update nb
* Use catalogue HMF
* Move definition of radec2galactic
* Update nb
* Update import
* Update import
* Add galatic coords to catalogues
* Update nb
2024-04-08 11:23:21 +02:00
rstiskalek
c71f5a8513
Upgrade nb
2024-04-03 13:44:55 +01:00
Richard Stiskalek
380c2f8df0
Stacking p(zcosmo | ... ) ( #124 )
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* Update nb
* Add import
* Add posterior stacking
2024-04-02 11:45:18 +02:00
rstiskalek
24cab8555a
Update nb
2024-04-02 09:28:57 +01:00
Richard Stiskalek
da43031877
Tests on mock PV catalogues ( #123 )
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* Rename nb
* Add nb
* Update scrtip
* Update script
* Add reading of CB2 mocks
* CB2 mocks support
* Add mock generator
* Add mock support
* Add CB2 mock support
* Update nb for mocks
* Update script
* Update nb
* Update nbs
2024-04-02 00:19:14 +02:00
Richard Stiskalek
8e9645e202
Add p(z_cosmo | z_obs) ( #122 )
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* Add import
* Add draft of the p(zcosmo)
* Add option for additional uncertainty
* Variable renaming
* Add zcosmo predict for flow calibration
* Add flow map notebook
* Update notebook
* Add posterior mean & std
* Edit docstring
2024-04-01 15:44:20 +02:00
rstiskalek
e3a645c935
Update nb
2024-03-28 12:23:52 +00:00
Richard Stiskalek
29b37172fa
Add SFI groups ( #121 )
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* Update LOS sampling
* Bring SD back to speed
* Update nb
* Update script
* Update requirements
* Update flow chi2 calc
* Update script
* Add support for SFI groups
* Update plot
* Update script
* Update script
2024-03-26 15:11:04 +01:00
Richard Stiskalek
27c1f9249b
Observer velocity script ( #120 )
...
* Rename script
* Delete scripts
* Add script
* Edit script
* Add script
* Update nb
* Update plotting
* Update .gitignore
* Update nb
* Update nb
* Add option to keep beta fixed
2024-03-26 10:42:53 +01:00
Richard Stiskalek
4093186f9a
Add z_obs output ( #119 )
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* Update SN model to output zobs too
* Add TF predicted zobs
* Add imoprt
* Update nb
* Calculate chi2
* Update nb
* Update script
2024-03-22 18:10:40 +01:00
Richard Stiskalek
f7285b2600
More flow ( #118 )
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* Add GoF calculation
* Add import
* Add base flow
* Add reading of ndata
* Update nb
* Update plotting
* Update script
* Update plots
* Updaet plo
* Add script
* Update nb
* Update nb
* Update script
* Update script
* Update nb
* Remove imports
* Improve labelling
* Improve flow calibration
* Add bulk flow plots
* Update flow
* Update scrit
* Calculate more radial steps
* Update bulk
* Update script
* Update nb
2024-03-21 16:50:37 +01:00
Richard Stiskalek
d0266584fa
CSiBORG2 subhalo catalogue ( #116 )
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* Add import
* Add CSiBORG2 subfind catalogue
* Add parent mass
* Update nb
2024-03-18 16:37:58 +01:00
rstiskalek
0f94457b7f
Update nb
2024-03-16 17:16:22 +00:00
Richard Stiskalek
fb4abebeb6
Add more flow modelling ( #115 )
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* Add SN calibration model
* Update imports
* Scale Carrick field
* Minor updates to flow validation
* Update script
* Update flow model
* Add CSiBORG2
* Add CSiboRG2 params
* Update imports
* Add regular grid interpolator to LOS
* Add nb
* Remove old code
* Update scripts
* Minor updates
* Minor updates
* Add TF
* Minor update
* Update notebook
* Update imports
* Add scan and loss of numpyro
* Add Pantheon
* Update svript
* Updaten b
* Add model loader
* Add jackknife
* Add evidence
* Update dr
* Add BIC to the flow model
* Update srcipt
* Update nb
* Update nb
* Update scripts
2024-03-16 17:02:00 +00:00
rstiskalek
b503a6f003
Add new notebook
2024-03-08 14:46:38 +00:00
rstiskalek
95af8db8e7
Delete old notebooks
2024-03-08 14:46:34 +00:00
Richard Stiskalek
a65e3cb15b
Add simple distance flow model ( #114 )
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* Add imports
* Add field LOS paths
* Add basic flow model
* Edit script
* Add nb
* Add nb
* Update nb
* Add some docs
* Add RA reading
* Add imoprts
* Updates to the flow model
* Update script
* Bring back A2
* Update imports
* Update imports
* Add Carrick to ICs
* Add Carrick boxsize
* Add Carrick and fix minor bugs
* Add Carrick box
* Update script
* Edit imports
* Add fixed flow!
* Update omega_m and add it
* Update nb
* Update nb
* Update nb
* Remove old print statements
* Update params
* Add thinning of chains
* Add import
* Add flow validation script
* Add submit script
* Add ksmooth
* Update nb
* Update params
* Update script
* Update string
* Move where distributions are defined
* Add density bias parameter
* Add lognorm mean
* Update scripts
* Update script
2024-03-08 10:44:19 +00:00
Richard Stiskalek
fc51f75e16
Add field interpolation along LOS ( #112 )
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* Add attemtp
* Add import
* Update LOS code
* Add better docstrings
* Update nb
2024-02-26 15:02:48 +00:00
