Richard Stiskalek
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8e3127f4d9
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New plots (#85)
* Update verbosity messages
* Update verbosity messags
* Update more verbosity flags
* Update the iterator settings
* Add basic plots
* Update verbosity flags
* Update arg parsre
* Update plots
* Remove some older code
* Fix some definitions
* Update plots
* Update plotting
* Update plots
* Add support functions
* Update nb
* Improve plots, move back to scripts
* Update plots
* pep8
* Add max overlap plot
* Add blank line
* Upload changes
* Update changes
* Add weighted stats
* Remove
* Add import
* Add Max's matching
* Edit submission
* Add paths to Max's matching
* Fix matching
* Edit submission
* Edit plot
* Add max overlap separation plot
* Add periodic distance
* Update overlap summaries
* Add nsim0 for Max matvhing
* Add Max's agreement plot
* Add Quijote for Max method
* Update ploitting
* Update name
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2023-08-18 19:20:47 +01:00 |
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rstiskalek
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36f4177f6b
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Add some blank spaces
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2023-08-08 11:48:31 +01:00 |
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rstiskalek
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7ef36c7ac0
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Add mass to name
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2023-08-08 11:46:56 +01:00 |
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Richard Stiskalek
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c7b600d0ad
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Periodic neighbours (#84)
* Edit the HMF plot
* Add periodic dist 2 points
* Add boxsize to RVSSphere
* Add periodic distance
* Adding periodic distance
* Add imports
* Change arguments
* Update bounds
* Lower min number of particles
* Change kwargs
* Add paths overlap quijote
* Add some comments
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2023-08-08 12:19:40 +02:00 |
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Richard Stiskalek
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344ff8e091
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Fixing overlaps and halo definitions. (#80)
* Add imports
* Refactor code
* Rename fof velocities
* Clean up and add Quijote
* Edit docstrings
* Update submission script
* Fix bug
* Start loading fitted properties
* Edit docstrings
* Update fitting for new `halo`
* Update CM definition and R200c
* Tune the minimum number of particles
* Enforce crossing threshold & tune hypers
* Fix periodiity when calculating angmom
* Doc strings
* Relax checkip
* Minor edit
* Fix old kwarg bug
* Fix CSiBORG bounds
* Catch warnings!
* Add `mass_kind` and new boundaries
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2023-07-31 16:13:21 +02:00 |
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Richard Stiskalek
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fb4b4edf19
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Quijote snapshots support (#77)
* Renaming
* Edit docs
* Delete old function
* Add a blank space
* Rename particle reader
* Add comments
* Rename
* Rename
* edit get_snapshots
* More renaming
* Remove old correction
* Add import
* Add basics of the Quijote reader
* Add a blank space
* Fix paths
* Rename function
* Fix HID and path
* Add more FoF reading
* Move definition
* Adding arguments
* Renaming
* Add kwargs for backward comp
* FoF Quijote return only hids
* Add sorting of quijote
* Add path to CSiBORG ICs snapshot
* Add support for Quijote
* initmatch paths for quijote
* Add kwargs
* Fix blank lines
* Rename kwarg
* Remove unused import
* Remove hardcoded numbers
* Update for Quijote
* Do not store velocities in QUijote ICs
* Box units mass Quijote
* Fix typo
* Ensure particles are not right at the edge
* Add structfit paths for QUuijote
* Basic CSiBORG units
* Add more quijote halo reading
* Add Quijote fitting
* Docs changes
* Docs changes
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2023-07-27 18:41:00 +02:00 |
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Richard Stiskalek
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eb8d070fff
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CSiBORG FoF switch (#75)
* Add moving FoF membership files
* add FoF membership path
* Add notes where its PHEW
* Add FoF catalogue path
* Correct typo
* Add more functionalities
* Make work with halo IDs from FoF
* Edit print statement
* Fix copy bug
* copy
* Add FoF catalogue reading
* Clean up script
* Fix typo
* Little edits
* Fix naming convention
* Rename key
* Remove loading substructure particles
* Rename CSiBORG Cat
* Rename clumps cat
* Rename cat
* Remove misplaced import
* Switch to halos
* rm import
* structfit of only halos
* Add FoF halo reading
* Add a short comment
* Fix __getitem__ to work with int
* Fix problems
* Improve __getitem__
* Add more conversion
* Fix indexing
* Fix __getitem__ assertion
* Fix numbers
* Rename
* Fix verbosity flags
* Add full Quijote HMF option
* Add plot of Quijote only
* Add quijote full paths
* Fix the fit_init script
* Renam arg
* Update .gitignore
* add default argument name
* Change default verbosity flag
* Modernise script structure
* Fix dictionary
* Fix reading to include m200c
* Modernise script
* Add args
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2023-07-24 14:10:21 +02:00 |
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Richard Stiskalek
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2185846e90
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CDF for nearest neighbour (#63)
* Updat ebounds
* fix mistake
* add plot script
* fix which sims
* Add Poisson
* Just docs
* Hide things to __main__
* Rename paths
* Move old script
* Remove radpos
* Paths renaming
* Paths renaming
* Remove trunk stuff
* Add import
* Add nearest neighbour search
* Add Quijote fiducial indices
* Add final snapshot matching
* Add fiducial observer selection
* add boxsizes
* Add reading functions
* Little stuff
* Bring back the fiducial observer
* Add arguments
* Add quijote paths
* Add notes
* Get this running
* Add yaml
* Remove Poisson stuff
* Get the 2PCF script running
* Add not finished htings
* Remove comment
* Verbosity only on 0th rank!
* Update plotting style
* Add nearest neighbour CDF
* Save radial distance too
* Add centres
* Add basic plotting
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2023-05-21 22:46:28 +01:00 |
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Richard Stiskalek
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255bec9710
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Quijote kNN adding (#62)
* Fix small bug
* Add fiducial observers
* Rename 1D knn
* Add new bounds system
* rm whitespace
* Add boudns
* Add simname to paths
* Add fiducial obserevrs
* apply bounds only if not none
* Add TODO
* add simnames
* update script
* Fix distance bug
* update yaml
* Update file reading
* Update gitignore
* Add plots
* add check if empty list
* add func to obtaining cross
* Update nb
* Remove blank lines
* update ignroes
* loop over a few ics
* update gitignore
* add comments
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2023-05-15 23:30:10 +01:00 |
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Richard Stiskalek
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1d847cbd06
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Add Quijote (#61)
* Rename paths object
* Remove redshift calculation
* Explicit keywrod arg
* Rename box units
* Basic renaming
* Little docs
* Rename paths
* add imports
* Sort imports
* Add Quijote cat
* Split boxes
* add Quijote path
* Add origin argument
* Update nbs
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2023-05-13 17:37:34 +01:00 |
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rstiskalek
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26ef1661a4
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Add verbosity flag
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2023-05-09 17:43:18 +01:00 |
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Richard Stiskalek
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b710b8e89c
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Add new ICs (#59)
* edit IC paths
* Remove import
* Edit path
* Change naming
* Add __main__
* Script to match everything
* Edit docs
* Remove test statement
* Move import
* Update nb
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2023-05-09 16:18:01 +01:00 |
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Richard Stiskalek
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51b670d30b
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Updates to the overlap reader. (#54)
* Flag for loading clumps_cat
* Optionally load clumps catalogues
* Update single pair reading
* Edit reading many pairs
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2023-05-07 16:34:55 +01:00 |
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Richard Stiskalek
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56e39a8b1d
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Overlapper improvements (#53)
* Store indices as f32
* Fix init sorting
* Organise imports
* Rename pathing
* Add particle loading
* Improve particle reading
* Add h5py reader
* edit particle path
* Update particles loading
* update particles loading
* Fix particle dumping
* Add init fitting
* Fix bug due to insufficient precision
* Add commnet
* Add comment
* Add clumps catalogue to halo cat
* Add comment
* Make sure PIDS never forced to float32
* fix pid reading
* fix pid reading
* Update matching to work with new arrays
* Stop using cubical sub boxes, turn off nshift if no smoothing
* Improve caching
* Move function definitions
* Simplify calculation
* Add import
* Small updates to the halo
* Simplify calculation
* Simplify looping calculation
* fix tonew
* Add initial data
* Add skip condition
* Add unit conversion
* Add loading background in batches
* Rename mmain index
* Switch overlaps to h5
* Add finite lagpatch check
* fix column name
* Add verbosity flags
* Save halo IDs instead.
* Switch back to npz
* Delte nbs
* Reduce size of the box
* Load correct bckg of halos being matched
* Remove verbosity
* verbosity edits
* Change lower thresholds
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2023-05-06 16:52:48 +01:00 |
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Richard Stiskalek
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f48eb6dcb0
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Dump radial profile information (#48)
* add radial position path
* pep8
* Add basic fit profile dumping
* pep8
* pep8
* pep8
* pep8
* pep8
* pep8
* Update TODO
* Fix parts is None bug
* Update nb
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2023-04-27 00:18:30 +01:00 |
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Richard Stiskalek
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04119a5314
|
Update initial matching & overlaps (#47)
* pep8
* fix convention
* Update script
* enforce optimisation boundaries to be finite
* Update TODO
* Remove sky matching
* FIx a small bug
* fix bug
* Remove import
* Add halo fitted quantities
* Update nbs
* update README
* Add load_initial comments
* Rename nbs
* Delete nb
* Update imports
* Rename function
* Update matcher
* Add overlap paths
* Update the matching script
* Update verbosity
* Add verbosity flags
* Simplify make_bckg_delta
* bug fix
* fix bug
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2023-04-21 01:35:06 +02:00 |
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Richard Stiskalek
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fdb0df8d4c
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Add mmain and other major updates (#44)
* Move paths to a separate file
* Add mmain reader
* Add a verbosity flag
* Fix imports
* Fix bug
* Rename files
* Return ultimate parents
* Add script to generate mmain
* Remove mmain path
* edit path
* Add mmain path
* Change function name
* Rename function
* Turn off verbose
* Fix list requirement
* Edit init match paths
* Fix init pathing
* Edit paths docs
* Edit dumpdir name
* Rename path
* Fix split paths
* Remove unused import
* Add comment
* Update readme
* remove read mmain
* Rename haloatalogue
* Fix minor bugs
* Update nbs
* Add create directory option
* Move split jobs
* Move spliot jobs
* Remove splitting
* Add import
* Edit script
* Deeper split folder
* Fix paths bug
* Rename catalogue
* Rename Catalogue
* Add new clumpread
* Edit paths
* add knn paths
* Update commenting
* Update imports
* Add more conversions
* Update temp file
* Add a note
* Add catalogue
* Cooment
* Update TODO
* Update script
* add nb
* Update
* pep8
* edit paths & pep8
* Fix knn auto paths
* add paths docs
* Add auto and cross knn paths
* Add new paths
* Simplify tpcf reading
* pep8 patch
* update readme
* Update progress
* pep8
* pep8
* pep8
* pep8
* pep8
* pep8
* pep8
* pep8
* pep8
* pep8
* pep8
* pep8
* pep8
* pep8
* pep8
* Pep 8 and restructure
* add lambda spin
* add clump and halo
* add checks
* Edit halo profile fit
* Update gitignore
* backup script
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2023-04-18 11:02:36 +02:00 |
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