Richard Stiskalek
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5784011de0
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kNN-CDF secondary halo bias (#40)
* Add seperate autoknn script & config file
* edit ics
* Edit submission script
* Add threshold values
* Edit batch sizign
* Remove print
* edit
* Rename files
* Rename
* Update nb
* edit runs
* Edit submit
* Add median threshold
* add new auto reader
* editt submit
* edit submit
* Edit submit
* Add mean prk
* Edit runs
* Remove correlation file
* Move split to clutering
* Add init
* Remove import
* Add the file
* Add correlation reading
* Edit scripts
* Add below and above median permutation for cross
* Update imports
* Move rvs_in_sphere
* Create utils
* Split
* Add import
* Add normalised marks
* Add import
* Edit readme
* Clean up submission file
* Stop tracking submit files
* Update gitignore
* Add poisson field analytical expression
* Add abstract generators
* Add generators
* Pass in the generator
* Add a check for if there are any files
* Start saving average density
* Update nb
* Update readme
* Update units
* Edit jobs
* Update submits
* Update reader
* Add random crossing
* Update crossing script
* Add crossing with random
* Update readme
* Update notebook
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2023-04-09 20:57:05 +01:00 |
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Richard Stiskalek
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8d34b832af
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Improve paths and documentation (#38)
* pep8
* style issue
* Documentation edits
* Remove old files
* Remove more old files
* Doc & stop setting snap and nsim in paths
* add nsnap, nsim support
* Remove blank space
* docs
* Docs edits
* Reduce redudant code
* docs
* Documentation
* Docs
* Simplify
* add nsnap nsim arguments
* Remove redundant docs
* Fix typos
* Shorten catalogue
* Remove import
* Remove blank line
* Docs only edits
* Rearrange imports
* Remove blank space
* Rearrange imports
* Rearrange imports
* Remove blank space
* Update submission scritp
* Edit docs
* Remove blank line
* new paths
* Update submission scripts
* Update file handling
* Remove blank line
* Move things around
* Ne paths
* Edit submission script
* edit paths
* Fix typo
* Fix bug
* Remove import
* Update nb
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2023-04-04 15:22:00 +01:00 |
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Richard Stiskalek
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8dea3da4de
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Speed up overlap (#27)
* Edit improt
* Simplify patch size calculation
* Add patch size percentiles
* Add various percentiles
* Remove comment
* Update TODO
* Change to 95th percentile
* Add import
* Add KNN properties
* Add new matching initial condition
* Add import
* Remove import
* Add fast neighbours option
* Further edits to fast neighbours
* add imports
* add new overlap calculation and non-zero things
* Remove print
* Clean up code
* Fix small bug
* Remove comment
* Add run single cross match
* change values
* Edit hyperparams
* Add comment
* Add the argument parser
* Add new lagpatch calc
* New lagpatch calc
* Delete old patch definitions
* Make clump dumping once again optional
* Add lagpatch to the catalogue
* Edit print statement
* Fix small bug
* Remove init radius
* Change to lagpatch key
* Fix a small bug
* Fix little bug
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2023-02-05 11:46:19 +00:00 |
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Richard Stiskalek
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beb811e84c
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Switch initial radius definition (#26)
* Add search for neighbours at z = 0
* Add initial snapshot KNN
* Add initi search either z =0 or z = 70
* Add import
* Add clumps_pos2cell
* Add function argument
* Add import
* Add spherical overlap and speed up make_delta
* Add clump limits calculation
* Sped up make_delta
* Add patch size conversion
* Add patch sizes
* Add patch size calculation
* Force catalogues to be in float32
* Optimised script
* Option to remove points with no overlap
* Add spherical aproximate overlap
* Fix subboxing bug
* Remove print diagnostics
* Add Lagrangian patch size
* Add patch size documentation
* Move when clumpsx converted to int
* Edit docs
* Remove spherical overlap
* New Langrangian patch calculation
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2023-01-31 15:09:35 +00:00 |
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Richard Stiskalek
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18f09767f4
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Overlap calculation (#18)
* Move cosine similarity out
* Basic overlap calculation
* add overlap import
* Add clump0 dict path
* Update README
* fix path bug
* Save as dict instead
* Change format to array of arrays
* Update paths
* Take fewer ICs for now
* Change to structured array
* Add overlap calculation
* Start saving IDs
* Add a blank space
* Update TODO
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2022-12-19 11:58:22 +01:00 |
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Richard Stiskalek
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13a9d11afe
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Particle init CM separation (#17)
* Rename
* rename module
* add new_ic_ids
* Add to_new support
* rm unnecessary comment
* Remove JUlia!
* add new package attempt
* add dump script
* simplify positions getter
* Remove unused code
* change dumpdirs
* update project
* Add sorting
* fix indexing bug
* add comment
* Add particle dumping
* Delete blank line
* Delete Julia things
* Update README
* add working script
* fix assignment bug
* fix bug
* save temp to temp folder
* fix indexing bug & path
* do not always crreate folder
* Rename file
* add initcm reader
* add x0, y0, z0 transforms
* add initcm to halo cat
* docs update
* add initial KNN
* add attempt at init match
* add initial fiducial radius
* rm blank space
* Add further KNN Init pos support
* Add init radius support
* Remove message about the bug
* Get rid of an error msg
* purge mention of knn_init
* Add init CM distance calc
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2022-12-16 11:18:16 +01:00 |
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