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Overlap fixing and more (#107)

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* Update README

* Update density field reader

* Update name of SDSSxALFAFA

* Fix quick bug

* Add little fixes

* Update README

* Put back fit_init

* Add paths to initial snapshots

* Add export

* Remove some choices

* Edit README

* Add Jens' comments

* Organize imports

* Rename snapshot

* Add additional print statement

* Add paths to initial snapshots

* Add masses to the initial files

* Add normalization

* Edit README

* Update README

* Fix bug in CSiBORG1 so that does not read fof_00001

* Edit README

* Edit README

* Overwrite comments

* Add paths to init lag

* Fix Quijote path

* Add lagpatch

* Edit submits

* Update README

* Fix numpy int problem

* Update README

* Add a flag to keep the snapshots open when fitting

* Add a flag to keep snapshots open

* Comment out some path issue

* Keep snapshots open

* Access directly snasphot

* Add lagpatch for CSiBORG2

* Add treatment of x-z coordinates flipping

* Add radial velocity field loader

* Update README

* Add lagpatch to Quijote

* Fix typo

* Add setter

* Fix typo

* Update README

* Add output halo cat as ASCII

* Add import

* Add halo plot

* Update README

* Add evaluating field at radial distanfe

* Add field shell evaluation

* Add enclosed mass computation

* Add BORG2 import

* Add BORG boxsize

* Add BORG paths

* Edit run

* Add BORG2 overdensity field

* Add bulk flow clauclation

* Update README

* Add new plots

* Add nbs

* Edit paper

* Update plotting

* Fix overlap paths to contain simname

* Add normalization of positions

* Add default paths to CSiBORG1

* Add overlap path simname

* Fix little things

* Add CSiBORG2 catalogue

* Update README

* Add import

* Add TNG density field constructor

* Add TNG density

* Add draft of calculating BORG ACL

* Fix bug

* Add ACL of enclosed density

* Add nmean acl

* Add galaxy bias calculation

* Add BORG acl notebook

* Add enclosed mass calculation

* Add TNG300-1 dir

* Add TNG300 and BORG1 dir

* Update nb
This commit is contained in:
Richard Stiskalek 2024-01-30 16:14:07 +00:00 • committed by GitHub
parent 0984191dc8
commit 9e4b34f579
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30 changed files with 10037 additions and 248 deletions
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12
scripts_independent/run_process_snapshot.py
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@ -24,13 +24,13 @@ if __name__ == "__main__":
# simname = "csiborg2_varysmall"
# mode = 1
chains = [1] + [25 + n * 25 for n in range(19)]
simname = "csiborg2_random"
mode = 1
# chains = [1] + [25 + n * 25 for n in range(19)]
# simname = "csiborg2_random"
# mode = 1
# chains = [7444 + n * 24 for n in range(1, 101)]
# simname = "csiborg1"
# mode = 3
chains = [7444 + n * 24 for n in range(101)]
simname = "csiborg1"
mode = 2
env = "/mnt/zfsusers/rstiskalek/csiborgtools/venv_csiborg/bin/python"
memory = 64