Aquila-Consortium/csiborgtools
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Overlap fixing and more (#107)

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* Update README

* Update density field reader

* Update name of SDSSxALFAFA

* Fix quick bug

* Add little fixes

* Update README

* Put back fit_init

* Add paths to initial snapshots

* Add export

* Remove some choices

* Edit README

* Add Jens' comments

* Organize imports

* Rename snapshot

* Add additional print statement

* Add paths to initial snapshots

* Add masses to the initial files

* Add normalization

* Edit README

* Update README

* Fix bug in CSiBORG1 so that does not read fof_00001

* Edit README

* Edit README

* Overwrite comments

* Add paths to init lag

* Fix Quijote path

* Add lagpatch

* Edit submits

* Update README

* Fix numpy int problem

* Update README

* Add a flag to keep the snapshots open when fitting

* Add a flag to keep snapshots open

* Comment out some path issue

* Keep snapshots open

* Access directly snasphot

* Add lagpatch for CSiBORG2

* Add treatment of x-z coordinates flipping

* Add radial velocity field loader

* Update README

* Add lagpatch to Quijote

* Fix typo

* Add setter

* Fix typo

* Update README

* Add output halo cat as ASCII

* Add import

* Add halo plot

* Update README

* Add evaluating field at radial distanfe

* Add field shell evaluation

* Add enclosed mass computation

* Add BORG2 import

* Add BORG boxsize

* Add BORG paths

* Edit run

* Add BORG2 overdensity field

* Add bulk flow clauclation

* Update README

* Add new plots

* Add nbs

* Edit paper

* Update plotting

* Fix overlap paths to contain simname

* Add normalization of positions

* Add default paths to CSiBORG1

* Add overlap path simname

* Fix little things

* Add CSiBORG2 catalogue

* Update README

* Add import

* Add TNG density field constructor

* Add TNG density

* Add draft of calculating BORG ACL

* Fix bug

* Add ACL of enclosed density

* Add nmean acl

* Add galaxy bias calculation

* Add BORG acl notebook

* Add enclosed mass calculation

* Add TNG300-1 dir

* Add TNG300 and BORG1 dir

* Update nb
This commit is contained in:
Richard Stiskalek 2024-01-30 16:14:07 +00:00 • committed by GitHub
parent 0984191dc8
commit 9e4b34f579
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30 changed files with 10037 additions and 248 deletions
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8
scripts/field_prop.py
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@ -53,10 +53,10 @@ def density_field(nsim, parser_args):
# Read in the particle coordinates and masses
if parser_args.simname == "csiborg1":
snapshot = csiborgtools.read.CSIBORG1Snapshot(nsim, nsnap, paths)
snapshot = csiborgtools.read.CSiBORG1Snapshot(nsim, nsnap, paths)
elif "csiborg2" in parser_args.simname:
kind = parser_args.simname.split("_")[-1]
snapshot = csiborgtools.read.CSIBORG2Snapshot(nsim, nsnap, paths, kind)
snapshot = csiborgtools.read.CSiBORG2Snapshot(nsim, nsnap, paths, kind)
elif parser_args.simname == "quijote":
snapshot = csiborgtools.read.QuijoteSnapshot(nsim, nsnap, paths)
else:
@ -106,10 +106,10 @@ def velocity_field(nsim, parser_args):
nsnap = max(paths.get_snapshots(nsim, parser_args.simname))
if parser_args.simname == "csiborg1":
snapshot = csiborgtools.read.CSIBORG1Snapshot(nsim, nsnap, paths)
snapshot = csiborgtools.read.CSiBORG1Snapshot(nsim, nsnap, paths)
elif "csiborg2" in parser_args.simname:
kind = parser_args.simname.split("_")[-1]
snapshot = csiborgtools.read.CSIBORG2Snapshot(nsim, nsnap, kind, paths)
snapshot = csiborgtools.read.CSiBORG2Snapshot(nsim, nsnap, kind, paths)
elif parser_args.simname == "quijote":
snapshot = csiborgtools.read.QuijoteSnapshot(nsim, nsnap, paths)
else: