mirror of
https://github.com/Richard-Sti/csiborgtools.git
synced 2024-12-22 11:18:01 +00:00
parent
ae92fd9b72
commit
0af925e26a
5 changed files with 25 additions and 67 deletions
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@ -66,7 +66,7 @@ class Paths:
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Returns
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-------
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path : str
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str
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"""
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if self._srcdir is None:
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raise ValueError("`srcdir` is not set!")
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@ -86,7 +86,7 @@ class Paths:
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Returns
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-------
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path : str
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str
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"""
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if self._borg_dir is None:
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raise ValueError("`borg_dir` is not set!")
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@ -106,7 +106,7 @@ class Paths:
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Returns
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-------
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path : str
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str
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"""
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if self._quijote_dir is None:
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raise ValueError("`quijote_dir` is not set!")
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@ -126,7 +126,7 @@ class Paths:
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Returns
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-------
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path : str
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str
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"""
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if self._postdir is None:
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raise ValueError("`postdir` is not set!")
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@ -146,7 +146,7 @@ class Paths:
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Returns
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-------
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path : str
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str
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"""
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fpath = join(self.postdir, "temp")
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try_create_directory(fpath)
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@ -186,7 +186,7 @@ class Paths:
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Returns
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-------
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path : str
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str
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"""
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return join(self.borg_dir, "mcmc", f"mcmc_{nsim}.h5")
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@ -231,7 +231,7 @@ class Paths:
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Returns
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-------
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path : str
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str
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"""
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if simname == "csiborg":
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fdir = join(self.postdir, "FoF_membership", )
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@ -258,7 +258,7 @@ class Paths:
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Returns
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-------
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path : str
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str
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"""
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fdir = join(self.postdir, "mmain")
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try_create_directory(fdir)
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@ -281,7 +281,7 @@ class Paths:
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Returns
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-------
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path : str
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str
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"""
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assert kind in ["particles", "fit"]
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ftype = "npy" if kind == "fit" else "h5"
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@ -353,7 +353,7 @@ class Paths:
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Returns
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-------
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path : str
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str
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"""
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if simname == "csiborg":
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fname = "ramses_out_{}"
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@ -411,7 +411,7 @@ class Paths:
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Returns
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-------
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snappath : str
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snapstr
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"""
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simpath = self.snapshots(nsim, simname, tonew=nsnap == 1)
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if simname == "csiborg":
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@ -436,7 +436,7 @@ class Paths:
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Returns
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-------
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path : str
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str
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"""
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if simname == "csiborg":
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fdir = join(self.postdir, "particles")
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@ -464,7 +464,7 @@ class Paths:
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Returns
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-------
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path : str
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str
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"""
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if simname == "csiborg":
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fdir = join(self.postdir, "structfit")
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@ -497,7 +497,7 @@ class Paths:
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Returns
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-------
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path : str
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str
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"""
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if simname == "csiborg":
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fdir = join(self.postdir, "overlap")
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@ -536,7 +536,7 @@ class Paths:
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Returns
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-------
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path : str
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str
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References
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----------
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@ -581,7 +581,7 @@ class Paths:
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Returns
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-------
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path : str
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str
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"""
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assert kind in ["density", "velocity", "potential", "radvel",
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"environment"]
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@ -610,7 +610,7 @@ class Paths:
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Returns
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-------
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path : str
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str
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"""
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fdir = join(self.postdir, "environment")
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try_create_directory(fdir)
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@ -634,7 +634,7 @@ class Paths:
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Returns
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-------
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path : str
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str
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"""
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fdir = join(self.postdir, "HMF")
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try_create_directory(fdir)
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@ -664,7 +664,7 @@ class Paths:
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Returns
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-------
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path : str
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str
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"""
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assert simname in ["csiborg", "quijote"]
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assert kind in ["dist", "bin_dist", "tot_counts"]
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@ -700,7 +700,7 @@ class Paths:
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Returns
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-------
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path : str
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str
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"""
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assert simname in ["csiborg", "quijote"]
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fdir = join(self.postdir, "knn", "auto")
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@ -733,7 +733,7 @@ class Paths:
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Returns
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-------
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path : str
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str
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"""
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fdir = join(self.postdir, "knn", "cross")
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try_create_directory(fdir)
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@ -764,7 +764,7 @@ class Paths:
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Returns
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-------
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path : str
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str
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"""
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fdir = join(self.postdir, "tpcf", "auto")
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try_create_directory(fdir)
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@ -28,14 +28,12 @@ import csiborgtools
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def pair_match_max(nsim0, nsimx, simname, min_logmass, mult, verbose):
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"""
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Match a pair of simulations using the method of [1].
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Match a pair of simulations using the Max method.
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Parameters
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----------
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nsim0 : int
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The reference simulation IC index.
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nsimx : int
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The cross simulation IC index.
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nsim0, nsimx : int
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The reference and cross simulation IC index.
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simname : str
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Simulation name.
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min_logmass : float
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@ -44,17 +42,6 @@ def pair_match_max(nsim0, nsimx, simname, min_logmass, mult, verbose):
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Multiplicative factor for search radius.
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verbose : bool
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Verbosity flag.
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Returns
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-------
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None
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References
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----------
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[1] Maxwell L Hutt, Harry Desmond, Julien Devriendt, Adrianne Slyz; The
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effect of local Universe constraints on halo abundance and clustering;
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Monthly Notices of the Royal Astronomical Society, Volume 516, Issue 3,
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November 2022, Pages 3592–3601, https://doi.org/10.1093/mnras/stac2407
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"""
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paths = csiborgtools.read.Paths(**csiborgtools.paths_glamdring)
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@ -42,13 +42,6 @@ def copy_membership(nsim, verbose=True):
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"""
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Copy the FoF particle halo membership to the CSiBORG directory and write it
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as a NumPy array instead of a text file.
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Parameters
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----------
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nsim : int
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IC realisation index.
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verbose : bool, optional
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Verbosity flag.
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"""
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paths = csiborgtools.read.Paths(**csiborgtools.paths_glamdring)
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fpath = join("/mnt/extraspace/jeg/greenwhale/Constrained_Sims",
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@ -76,19 +76,6 @@ def main(nsim, simname, verbose):
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into a HDF5 file. Stores the first and last index of each halo in the
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particle array for fast slicing of the array to acces particles of a single
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halo.
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Parameters
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----------
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nsim : int
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IC realisation index.
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simname : str
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Simulation name.
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verbose : bool
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Verbosity flag.
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Returns
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-------
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None
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"""
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paths = csiborgtools.read.Paths(**csiborgtools.paths_glamdring)
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if simname == "csiborg":
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@ -44,15 +44,6 @@ def _main(nsim, simname, verbose):
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"""
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Sort the initial snapshot particles according to their final snapshot
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ordering and dump them into a HDF5 file.
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Parameters
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----------
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nsim : int
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IC realisation index.
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simname : str
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Simulation name.
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verbose : bool
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Verbosity flag.
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"""
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paths = csiborgtools.read.Paths(**csiborgtools.paths_glamdring)
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if simname == "csiborg":
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